Wall clock time and date at job start Sun Mar 29 2020 23:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35276 * 119.68320 * 2 1 4 4 C 1.40165 * 120.12327 * 180.02562 * 3 2 1 5 5 C 1.36310 * 119.61343 * 0.02562 * 4 3 2 6 6 C 1.40623 * 119.38779 * 359.97438 * 5 4 3 7 7 N 1.33230 * 131.80308 * 179.68902 * 6 5 4 8 8 C 1.32296 * 109.82725 * 179.97438 * 7 6 5 9 9 C 1.38654 * 108.20733 * 0.35173 * 8 7 6 10 10 C 1.41673 * 126.79715 * 179.79309 * 9 8 7 11 11 O 1.21819 * 120.00204 * 187.89366 * 10 9 8 12 12 N 1.34782 * 119.99799 * 7.88574 * 10 9 8 13 13 C 1.36912 * 120.00056 * 183.69960 * 12 10 9 14 14 H 1.08003 * 119.99934 * 359.97438 * 13 12 10 15 15 C 1.38958 * 120.00330 * 180.02562 * 13 12 10 16 16 N 1.31431 * 119.99764 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46900 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47199 * 119.99849 * 17 15 13 20 20 H 1.48496 * 109.47251 * 240.00019 * 17 15 13 21 21 N 1.35966 * 119.68144 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47112 * 110.28400 * 1 2 3 23 23 H 1.08992 * 109.47501 * 230.28698 * 1 2 3 24 24 H 1.09003 * 109.47196 * 350.28962 * 1 2 3 25 25 H 1.08000 * 119.93720 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.19205 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.30740 * 179.97438 * 5 4 3 28 28 H 1.08000 * 125.89172 * 180.14279 * 8 7 6 29 29 H 0.97003 * 119.99930 * 3.69962 * 12 10 9 30 30 H 0.96998 * 120.00429 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1769 1.1752 0.0000 4 6 3.5785 1.1860 -0.0005 5 6 4.2612 0.0062 -0.0016 6 6 3.5462 -1.2048 -0.0016 7 7 3.9499 -2.4744 -0.0078 8 6 2.8998 -3.2791 -0.0041 9 6 1.7548 -2.4973 -0.0031 10 6 0.4142 -2.9556 -0.0035 11 8 -0.5002 -2.1637 -0.1473 12 7 0.1507 -4.2679 0.1551 13 6 -1.1390 -4.7212 0.0791 14 1 -1.9452 -4.0272 -0.1075 15 6 -1.4108 -6.0740 0.2432 16 7 -0.4298 -6.9185 0.4708 17 14 -3.1703 -6.6925 0.1388 18 1 -4.0817 -5.5502 -0.1256 19 1 -3.2830 -7.6806 -0.9641 20 1 -3.5449 -7.3385 1.4223 21 7 2.1803 -1.1813 -0.0005 22 1 -0.3633 -0.3563 -0.9639 23 1 -0.3634 -0.6566 0.7905 24 1 -0.3634 1.0130 0.1733 25 1 1.6307 2.1069 0.0004 26 1 4.1145 2.1237 -0.0001 27 1 5.3411 0.0014 -0.0024 28 1 2.9295 -4.3587 -0.0055 29 1 0.8748 -4.8911 0.3231 30 1 -0.6194 -7.8628 0.5858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584456651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:34 Heat of formation + Delta-G solvation = 44.259824 kcal Electronic energy + Delta-G solvation = -17188.116056 eV Core-core repulsion = 14370.407911 eV Total energy + Delta-G solvation = -2817.708146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.89863 -40.03467 -38.59627 -36.25208 -34.77130 -33.47486 -32.30088 -30.66442 -28.30935 -26.98680 -24.40704 -23.99242 -23.12492 -20.77076 -20.27729 -18.67196 -17.71821 -17.47795 -17.31979 -16.70395 -16.29355 -15.87125 -15.28194 -15.20491 -14.62504 -14.45634 -14.20541 -13.74601 -13.42662 -13.24084 -12.98329 -12.46756 -12.35345 -12.30295 -12.06065 -11.93072 -11.50141 -11.33693 -10.18145 -10.02595 -9.87376 -8.75784 -8.54359 -5.97907 -0.22654 -0.07005 1.26947 1.39276 1.45849 1.49744 1.58216 2.28350 2.41900 2.55954 3.17981 3.24041 3.25546 3.47770 3.88412 3.91615 4.17236 4.21222 4.45882 4.61181 4.71744 4.82712 4.87094 5.12695 5.19800 5.32546 5.36966 5.46634 5.69663 5.91117 6.06440 6.50138 6.66597 7.03313 7.41516 7.97826 8.63392 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.006257 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.223175 B = 4474.089650 C = 5117.428212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.076 3.924 3 C -0.140 4.140 4 C -0.061 4.061 5 C -0.114 4.114 6 C 0.217 3.783 7 N -0.523 5.523 8 C 0.079 3.921 9 C -0.139 4.139 10 C 0.498 3.502 11 O -0.619 6.619 12 N -0.546 5.546 13 C -0.327 4.327 14 H 0.089 0.911 15 C -0.012 4.012 16 N -0.913 5.913 17 Si 1.001 2.999 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.270 1.270 21 N -0.336 5.336 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.192 0.808 26 H 0.198 0.802 27 H 0.178 0.822 28 H 0.196 0.804 29 H 0.395 0.605 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.783 14.138 -0.220 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 C -0.160 4.160 4 C -0.084 4.084 5 C -0.134 4.134 6 C -0.023 4.023 7 N -0.243 5.243 8 C -0.080 4.080 9 C -0.253 4.253 10 C 0.289 3.711 11 O -0.510 6.510 12 N -0.180 5.180 13 C -0.456 4.456 14 H 0.107 0.893 15 C -0.213 4.213 16 N -0.553 5.553 17 Si 0.824 3.176 18 H -0.193 1.193 19 H -0.195 1.195 20 H -0.195 1.195 21 N -0.007 5.007 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.209 0.791 26 H 0.215 0.785 27 H 0.196 0.804 28 H 0.213 0.787 29 H 0.230 0.770 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.925 14.131 -0.297 15.740 hybrid contribution -1.288 -1.182 0.035 1.749 sum 5.637 12.950 -0.261 14.126 Atomic orbital electron populations 1.21180 0.86985 1.02468 1.04302 1.21198 0.96857 0.83914 1.01023 1.21306 0.95586 0.96222 1.02870 1.21694 0.93167 0.99330 0.94255 1.20742 1.01958 0.86735 1.03936 1.21855 0.79946 0.95966 1.04556 1.70394 1.30228 0.98554 1.25151 1.23306 0.86226 1.00298 0.98157 1.20063 0.96542 0.83236 1.25446 1.15558 0.87101 0.83322 0.85127 1.90744 1.48596 1.52709 1.58977 1.41672 1.09385 1.05940 1.60977 1.19804 0.85004 0.93066 1.47775 0.89271 1.26193 1.04136 0.95208 0.95716 1.69695 1.33796 1.04575 1.47202 0.84749 0.76345 0.78122 0.78373 1.19341 1.19513 1.19535 1.42585 1.08922 1.05314 1.43867 0.91903 0.91167 0.88333 0.79098 0.78541 0.80442 0.78734 0.77035 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 7.97 71.24 0.57 -2.65 16 2 C 0.08 2.45 6.78 41.23 0.28 2.73 16 3 C -0.14 -2.89 9.60 22.05 0.21 -2.68 16 4 C -0.06 -1.01 10.07 22.29 0.22 -0.79 16 5 C -0.11 -2.67 10.10 22.40 0.23 -2.44 16 6 C 0.22 7.66 7.77 133.98 1.04 8.70 16 7 N -0.52 -20.54 11.25 -192.63 -2.17 -22.71 16 8 C 0.08 3.28 11.31 84.72 0.96 4.24 16 9 C -0.14 -6.27 6.81 39.07 0.27 -6.00 16 10 C 0.50 25.69 7.50 85.09 0.64 26.33 16 11 O -0.62 -33.49 10.24 -4.73 -0.05 -33.54 16 12 N -0.55 -29.18 5.25 -315.04 -1.65 -30.83 16 13 C -0.33 -18.45 9.67 84.07 0.81 -17.64 16 14 H 0.09 5.26 7.16 -2.91 -0.02 5.24 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 16 N -0.91 -49.10 13.05 21.67 0.28 -48.82 16 17 Si 1.00 42.09 29.55 68.60 2.03 44.12 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 N -0.34 -13.18 2.96 -330.90 -0.98 -14.16 16 22 H 0.06 2.53 6.88 -2.39 -0.02 2.51 16 23 H 0.07 3.01 5.95 -5.67 -0.03 2.98 16 24 H 0.10 2.41 7.85 -2.39 -0.02 2.39 16 25 H 0.19 2.27 7.91 -2.91 -0.02 2.25 16 26 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 27 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.20 7.31 7.44 -2.91 -0.02 7.29 16 29 H 0.40 20.37 6.75 -92.71 -0.63 19.74 16 30 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -71.08 261.06 3.70 -67.38 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.54 Total: 28.90 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.69 Total: 9.66 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.51 Total: -116.52 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -71.08 3.70 -67.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584456651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.636 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds