Wall clock time and date at job start Sun Mar 29 2020 23:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47246 * 179.97438 * 12 9 7 14 14 C 1.47445 * 110.99760 * 69.87100 * 13 12 9 15 15 C 1.54325 * 107.23174 * 123.25993 * 14 13 12 16 16 C 1.55136 * 103.01885 * 22.28050 * 15 14 13 17 17 O 1.42904 * 110.99059 * 82.47617 * 16 15 14 18 18 C 1.50704 * 110.99243 * 206.25428 * 16 15 14 19 19 O 1.20825 * 119.99820 * 93.54615 * 18 16 15 20 20 O 1.34227 * 120.00061 * 273.54869 * 18 16 15 21 21 C 1.47850 * 111.00197 * 190.71348 * 13 12 9 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 24 24 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 25 25 H 1.09004 * 109.47253 * 59.99496 * 12 9 7 26 26 H 1.08997 * 109.89122 * 242.66288 * 14 13 12 27 27 H 1.08998 * 109.88940 * 3.85337 * 14 13 12 28 28 H 1.08994 * 110.70721 * 140.66940 * 15 14 13 29 29 H 1.09005 * 110.70506 * 263.89978 * 15 14 13 30 30 H 0.96700 * 113.99799 * 61.45370 * 17 16 15 31 31 H 0.96699 * 116.99904 * 179.97438 * 20 18 16 32 32 H 1.08999 * 110.36836 * 332.46881 * 21 13 12 33 33 H 1.08994 * 110.36838 * 94.80619 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 7 1.5108 -4.9343 -0.0020 14 6 0.8369 -5.1548 -1.2948 15 6 1.3393 -6.5052 -1.8477 16 6 1.8353 -7.2410 -0.5752 17 8 0.7484 -7.8641 0.1122 18 6 2.9032 -8.2483 -0.9158 19 8 4.0691 -7.9373 -0.8529 20 8 2.5593 -9.4909 -1.2891 21 6 2.4203 -6.0713 0.2548 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9223 -2.5282 -1.9998 24 1 2.8726 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 -0.2425 -5.1924 -1.1486 27 1 1.0918 -4.3526 -1.9873 28 1 0.5249 -7.0557 -2.3186 29 1 2.1595 -6.3532 -2.5494 30 1 0.2891 -8.5381 -0.4073 31 1 3.2793 -10.1016 -1.4981 32 1 3.4291 -5.8338 -0.0826 33 1 2.4232 -6.3227 1.3154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:00 Heat of formation + Delta-G solvation = -182.900444 kcal Electronic energy + Delta-G solvation = -18522.193196 eV Core-core repulsion = 15355.032972 eV Total energy + Delta-G solvation = -3167.160225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95993 -38.88210 -36.70918 -36.47505 -34.98574 -32.12327 -31.23444 -28.87631 -27.82493 -24.66083 -23.42102 -21.67545 -20.50472 -20.43587 -18.72500 -17.87787 -17.27681 -16.31647 -15.56594 -15.52345 -14.95344 -14.64204 -14.02607 -13.80965 -13.70149 -13.42130 -12.97957 -12.47927 -12.20972 -12.02335 -11.83405 -11.70630 -11.65090 -11.43515 -10.96192 -10.77505 -10.48489 -10.21111 -10.10680 -9.99631 -9.15897 -8.45404 -8.02519 -7.85820 -6.33939 -4.17729 1.80899 2.59822 3.42940 3.44410 3.63577 3.88574 4.16077 4.35324 4.48363 4.62308 4.87634 5.23478 5.32731 5.35969 5.55619 5.67571 5.78653 5.92391 6.05675 6.07042 6.14079 6.32866 6.43191 6.69723 7.25687 7.30814 7.40306 7.55998 7.63538 8.03275 8.36339 8.87349 9.09106 9.68139 11.06342 Molecular weight = 245.11amu Principal moments of inertia in cm(-1) A = 0.051443 B = 0.005156 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.161459 B = 5429.426772 C = 5682.548486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.036 3.964 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.652 4.652 8 H 0.048 0.952 9 C 0.220 3.780 10 H 0.058 0.942 11 O -0.576 6.576 12 C 0.031 3.969 13 N -0.517 5.517 14 C 0.060 3.940 15 C -0.164 4.164 16 C 0.137 3.863 17 O -0.520 6.520 18 C 0.466 3.534 19 O -0.505 6.505 20 O -0.515 6.515 21 C 0.065 3.935 22 H 0.285 0.715 23 H 0.347 0.653 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.383 0.617 31 H 0.410 0.590 32 H 0.073 0.927 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -16.724 -4.425 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.173 4.173 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.690 4.690 8 H 0.066 0.934 9 C 0.163 3.837 10 H 0.076 0.924 11 O -0.381 6.381 12 C -0.096 4.096 13 N -0.241 5.241 14 C -0.067 4.067 15 C -0.203 4.203 16 C 0.093 3.907 17 O -0.326 6.326 18 C 0.306 3.694 19 O -0.392 6.392 20 O -0.327 6.327 21 C -0.063 4.063 22 H 0.097 0.903 23 H 0.193 0.807 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.231 0.769 31 H 0.269 0.731 32 H 0.091 0.909 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.735 -14.324 -2.970 14.882 hybrid contribution 1.839 -2.606 -1.599 3.568 sum 4.573 -16.931 -4.569 18.123 Atomic orbital electron populations 1.70628 1.06901 1.32386 1.42633 1.25760 0.96491 1.02368 0.92706 0.83605 0.74937 0.75507 0.76476 1.20744 1.21448 1.21524 1.22421 0.94341 0.92560 1.59702 0.93376 1.19533 0.88522 0.90096 0.85556 0.92397 1.86571 1.39501 1.96102 1.15887 1.23103 0.96932 0.89513 1.00067 1.63673 1.27768 1.01393 1.31253 1.22880 1.00443 0.93319 0.90064 1.23620 1.01950 0.99048 0.95695 1.22212 0.84404 0.89107 0.94976 1.86694 1.45422 1.57174 1.43265 1.24381 0.90512 0.81875 0.72587 1.90737 1.20832 1.78902 1.48694 1.84515 1.45206 1.23605 1.79402 1.23038 0.95608 0.87248 1.00433 0.90279 0.80742 0.95415 0.91067 0.89825 0.90758 0.89322 0.90416 0.76882 0.73090 0.90924 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.53 55.43 0.75 -26.36 16 2 C 0.04 1.02 5.40 -17.82 -0.10 0.92 16 3 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.65 -18.03 8.76 -34.44 -0.30 -18.33 16 8 H 0.05 1.31 7.74 -52.49 -0.41 0.91 16 9 C 0.22 5.51 2.68 -27.88 -0.07 5.43 16 10 H 0.06 1.62 8.01 -51.93 -0.42 1.21 16 11 O -0.58 -13.84 9.63 -35.23 -0.34 -14.18 16 12 C 0.03 0.66 4.40 -3.83 -0.02 0.64 16 13 N -0.52 -9.52 5.16 -231.25 -1.19 -10.71 16 14 C 0.06 0.98 5.51 -2.83 -0.02 0.96 16 15 C -0.16 -2.04 6.13 -24.91 -0.15 -2.20 16 16 C 0.14 1.80 1.26 -89.64 -0.11 1.69 16 17 O -0.52 -6.55 13.11 -46.15 -0.60 -7.16 16 18 C 0.47 5.71 7.35 36.01 0.26 5.98 16 19 O -0.50 -7.63 16.50 -18.75 -0.31 -7.94 16 20 O -0.52 -4.37 13.07 -43.73 -0.57 -4.95 16 21 C 0.06 1.04 5.71 -2.30 -0.01 1.02 16 22 H 0.29 8.84 6.47 -40.82 -0.26 8.57 16 23 H 0.35 7.50 7.92 45.56 0.36 7.86 16 24 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 25 H 0.07 1.49 8.07 -51.93 -0.42 1.07 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.07 1.25 5.21 -51.93 -0.27 0.98 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 30 H 0.38 3.16 8.86 45.56 0.40 3.56 16 31 H 0.41 1.74 9.10 45.56 0.41 2.15 16 32 H 0.07 1.19 6.88 -51.93 -0.36 0.83 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 278.11 15.07 4.19 4.19 Total: -1.00 -33.61 278.11 -5.53 -39.13 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -1.85 Total: 12.00 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.52 Total: -3.88 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.44 Total: -37.07 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.82 Total: -34.22 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.61 -5.53 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.766 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds