Wall clock time and date at job start Sun Mar 29 2020 23:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47246 * 179.97438 * 12 9 7 14 14 C 1.47445 * 110.99760 * 69.87100 * 13 12 9 15 15 C 1.54325 * 107.23174 * 123.25993 * 14 13 12 16 16 C 1.55136 * 103.01885 * 22.28050 * 15 14 13 17 17 O 1.42904 * 110.99059 * 82.47617 * 16 15 14 18 18 C 1.50704 * 110.99243 * 206.25428 * 16 15 14 19 19 O 1.20825 * 119.99820 * 93.54615 * 18 16 15 20 20 O 1.34227 * 120.00061 * 273.54869 * 18 16 15 21 21 C 1.47850 * 111.00197 * 190.71348 * 13 12 9 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 24 24 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 25 25 H 1.09004 * 109.47253 * 59.99496 * 12 9 7 26 26 H 1.08997 * 109.89122 * 242.66288 * 14 13 12 27 27 H 1.08998 * 109.88940 * 3.85337 * 14 13 12 28 28 H 1.08994 * 110.70721 * 140.66940 * 15 14 13 29 29 H 1.09005 * 110.70506 * 263.89978 * 15 14 13 30 30 H 0.96700 * 113.99799 * 61.45370 * 17 16 15 31 31 H 0.96699 * 116.99904 * 179.97438 * 20 18 16 32 32 H 1.08999 * 110.36836 * 332.46881 * 21 13 12 33 33 H 1.08994 * 110.36838 * 94.80619 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 7 1.5108 -4.9343 -0.0020 14 6 0.8369 -5.1548 -1.2948 15 6 1.3393 -6.5052 -1.8477 16 6 1.8353 -7.2410 -0.5752 17 8 0.7484 -7.8641 0.1122 18 6 2.9032 -8.2483 -0.9158 19 8 4.0691 -7.9373 -0.8529 20 8 2.5593 -9.4909 -1.2891 21 6 2.4203 -6.0713 0.2548 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9223 -2.5282 -1.9998 24 1 2.8726 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 -0.2425 -5.1924 -1.1486 27 1 1.0918 -4.3526 -1.9873 28 1 0.5249 -7.0557 -2.3186 29 1 2.1595 -6.3532 -2.5494 30 1 0.2891 -8.5381 -0.4073 31 1 3.2793 -10.1016 -1.4981 32 1 3.4291 -5.8338 -0.0826 33 1 2.4232 -6.3227 1.3154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:00 Heat of formation + Delta-G solvation = -213.594668 kcal Electronic energy + Delta-G solvation = -18523.524198 eV Core-core repulsion = 15355.032972 eV Total energy + Delta-G solvation = -3168.491226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.96504 -40.10611 -38.23233 -37.39398 -36.40763 -34.26616 -32.61179 -30.08266 -29.53847 -26.36774 -24.74036 -23.33964 -21.98624 -21.54670 -19.67845 -19.33538 -18.79359 -17.54156 -16.91625 -16.64767 -16.50104 -15.85667 -15.70920 -15.62044 -15.14434 -14.68372 -14.26697 -14.12825 -13.83217 -13.48940 -13.07310 -12.94544 -12.80484 -12.70727 -12.58212 -12.14571 -12.05440 -11.92225 -11.88371 -11.18423 -11.03671 -10.61485 -10.03113 -9.31333 -8.59900 -6.45197 0.86547 1.54722 1.62171 1.71175 1.81842 2.56972 2.88718 3.07172 3.17060 3.18995 3.34877 3.88693 4.05148 4.16738 4.22369 4.30447 4.37211 4.54390 4.63973 4.66906 4.82347 4.94370 5.13074 5.38651 5.46154 5.76392 5.97245 6.06114 6.18450 6.56071 6.57987 6.80495 7.17665 7.51257 8.77966 Molecular weight = 245.11amu Principal moments of inertia in cm(-1) A = 0.051443 B = 0.005156 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.161459 B = 5429.426772 C = 5682.548486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.015 4.015 3 Si 1.116 2.884 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.662 4.662 8 H 0.050 0.950 9 C 0.223 3.777 10 H 0.019 0.981 11 O -0.579 6.579 12 C 0.049 3.951 13 N -0.534 5.534 14 C 0.057 3.943 15 C -0.150 4.150 16 C 0.143 3.857 17 O -0.532 6.532 18 C 0.479 3.521 19 O -0.537 6.537 20 O -0.498 6.498 21 C 0.061 3.939 22 H 0.268 0.732 23 H 0.359 0.641 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.403 0.597 31 H 0.432 0.568 32 H 0.069 0.931 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -18.027 -5.462 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.938 3.062 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.700 4.700 8 H 0.068 0.932 9 C 0.166 3.834 10 H 0.037 0.963 11 O -0.385 6.385 12 C -0.079 4.079 13 N -0.258 5.258 14 C -0.070 4.070 15 C -0.189 4.189 16 C 0.099 3.901 17 O -0.341 6.341 18 C 0.320 3.680 19 O -0.427 6.427 20 O -0.312 6.312 21 C -0.067 4.067 22 H 0.079 0.921 23 H 0.205 0.795 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.104 0.896 30 H 0.255 0.745 31 H 0.295 0.705 32 H 0.087 0.913 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.614 -15.700 -4.032 16.608 hybrid contribution 1.511 -2.338 -1.270 3.060 sum 5.126 -18.038 -5.302 19.487 Atomic orbital electron populations 1.70772 1.08019 1.31312 1.45404 1.27268 0.96468 1.06352 0.91625 0.82965 0.74094 0.71311 0.77878 1.21116 1.19766 1.19367 1.22817 0.94656 0.93845 1.58660 0.93169 1.19281 0.88329 0.91219 0.84584 0.96305 1.86514 1.39618 1.96188 1.16190 1.22699 0.95629 0.89558 1.00013 1.63521 1.28180 1.01136 1.32961 1.22822 0.99612 0.95522 0.89052 1.23538 1.03161 0.96794 0.95393 1.21881 0.84909 0.88915 0.94407 1.86662 1.45380 1.58000 1.44067 1.23951 0.89352 0.82655 0.72003 1.90741 1.21946 1.79721 1.50305 1.84446 1.46044 1.22339 1.78392 1.22972 0.95177 0.87789 1.00767 0.92113 0.79458 0.94861 0.91647 0.91051 0.91649 0.86124 0.89606 0.74533 0.70468 0.91325 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.03 13.53 21.45 0.29 -56.74 16 2 C -0.01 -0.85 5.40 84.66 0.46 -0.39 16 3 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.66 -36.91 8.76 25.60 0.22 -36.69 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.22 11.46 2.68 29.85 0.08 11.54 16 10 H 0.02 1.12 8.01 -2.39 -0.02 1.10 16 11 O -0.58 -28.40 9.63 -148.98 -1.43 -29.83 16 12 C 0.05 2.07 4.40 86.30 0.38 2.45 16 13 N -0.53 -19.66 5.16 -885.53 -4.57 -24.23 16 14 C 0.06 1.81 5.51 86.65 0.48 2.29 16 15 C -0.15 -3.35 6.13 31.78 0.19 -3.16 16 16 C 0.14 3.46 1.26 -10.16 -0.01 3.45 16 17 O -0.53 -12.12 13.11 -138.54 -1.82 -13.94 16 18 C 0.48 10.46 7.35 71.24 0.52 10.98 16 19 O -0.54 -15.25 16.50 21.97 0.36 -14.88 16 20 O -0.50 -6.59 13.07 -47.10 -0.62 -7.20 16 21 C 0.06 1.91 5.71 86.77 0.50 2.40 16 22 H 0.27 17.20 6.47 -92.71 -0.60 16.60 16 23 H 0.36 15.61 7.92 -74.06 -0.59 15.03 16 24 H 0.03 1.35 7.96 -2.39 -0.02 1.33 16 25 H 0.07 2.78 8.07 -2.38 -0.02 2.76 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.17 5.21 -2.39 -0.01 2.15 16 28 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 1.82 8.03 -2.38 -0.02 1.80 16 30 H 0.40 5.30 8.86 -74.06 -0.66 4.64 16 31 H 0.43 1.98 9.10 -74.06 -0.67 1.31 16 32 H 0.07 2.21 6.88 -2.39 -0.02 2.20 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -73.13 278.11 -3.49 -76.62 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.58 Total: 25.55 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 2.82 Total: -7.12 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -4.28 Total: -80.97 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -3.50 Total: -65.86 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -73.13 -3.49 -76.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.976 kcal (2) G-P(sol) polarization free energy of solvation -73.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds