Wall clock time and date at job start Sun Mar 29 2020 23:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47345 * 270.00525 * 3 2 1 5 5 H 1.48505 * 109.46773 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47304 * 150.00173 * 3 2 1 7 7 C 1.37871 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99988 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00043 * 180.02562 * 7 2 1 10 10 H 1.09007 * 109.46919 * 299.99422 * 9 7 2 11 11 O 1.42899 * 109.47295 * 59.99862 * 9 7 2 12 12 C 1.52998 * 109.47190 * 180.02562 * 9 7 2 13 13 N 1.46905 * 109.47216 * 179.97438 * 12 9 7 14 14 C 1.46897 * 111.00208 * 185.64107 * 13 12 9 15 15 C 1.50696 * 110.45876 * 301.28834 * 14 13 12 16 16 O 1.20825 * 120.00518 * 145.15454 * 15 14 13 17 17 O 1.34232 * 119.99850 * 325.14767 * 15 14 13 18 18 C 1.54513 * 110.50608 * 63.88740 * 14 13 12 19 19 C 1.54485 * 104.05871 * 118.78187 * 18 14 13 20 20 O 1.44423 * 104.80286 * 23.98044 * 19 18 14 21 21 C 1.44789 * 105.29482 * 319.44840 * 20 19 18 22 22 H 0.96997 * 119.99580 * 359.97438 * 1 2 3 23 23 H 0.96696 * 113.99702 * 60.00075 * 11 9 7 24 24 H 1.09003 * 109.47089 * 59.99871 * 12 9 7 25 25 H 1.09003 * 109.46912 * 299.99965 * 12 9 7 26 26 H 1.00903 * 110.99119 * 61.69482 * 13 12 9 27 27 H 0.96701 * 116.99700 * 180.02562 * 17 15 14 28 28 H 1.08999 * 110.51203 * 237.42576 * 18 14 13 29 29 H 1.08996 * 110.51228 * 0.02562 * 18 14 13 30 30 H 1.09002 * 110.37029 * 142.80862 * 19 18 14 31 31 H 1.08998 * 110.37264 * 265.14429 * 19 18 14 32 32 H 1.09000 * 110.42826 * 281.77972 * 21 20 19 33 33 H 1.09005 * 110.48349 * 159.32780 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8896 11 8 3.9875 -0.5212 1.1674 12 6 4.0216 -2.6365 -0.0014 13 7 5.4906 -2.6365 -0.0014 14 6 6.0171 -4.0012 -0.1376 15 6 5.5213 -4.8717 0.9882 16 8 5.2794 -6.0385 0.7882 17 8 5.3486 -4.3510 2.2132 18 6 5.6163 -4.6021 -1.5035 19 6 6.9661 -4.8808 -2.2014 20 8 7.9182 -5.0138 -1.1236 21 6 7.5614 -3.9848 -0.1696 22 1 -0.4849 0.8401 0.0004 23 1 3.7018 -0.9252 1.9982 24 1 3.6585 -3.1494 -0.8921 25 1 3.6579 -3.1513 0.8879 26 1 5.8521 -2.1906 0.8284 27 1 5.0291 -4.9485 2.9032 28 1 5.0597 -5.5289 -1.3644 29 1 5.0280 -3.8865 -2.0778 30 1 6.9122 -5.8053 -2.7763 31 1 7.2385 -4.0464 -2.8476 32 1 7.9238 -3.0130 -0.5048 33 1 7.9639 -4.2217 0.8154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605601282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:13 Heat of formation + Delta-G solvation = -206.175175 kcal Electronic energy + Delta-G solvation = -18754.751042 eV Core-core repulsion = 15586.581550 eV Total energy + Delta-G solvation = -3168.169493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.10537 -39.85569 -38.49381 -37.25062 -36.07802 -34.41353 -31.96758 -30.88379 -29.20204 -25.90340 -25.40811 -23.88439 -22.26708 -20.97833 -19.45194 -19.06500 -18.57728 -17.64680 -16.97319 -16.76353 -16.64297 -16.27320 -16.02106 -15.87578 -15.17113 -14.67423 -14.61566 -14.13507 -13.68675 -13.39873 -13.24101 -12.84351 -12.80561 -12.65449 -12.54057 -12.23042 -12.03625 -11.98940 -11.81068 -11.09506 -10.84120 -10.80108 -10.18589 -9.65924 -8.34560 -6.50468 0.96930 1.44275 1.49531 1.78935 1.86110 2.45871 2.74668 2.96729 3.04132 3.32730 3.71953 4.04968 4.06864 4.10768 4.25507 4.31816 4.38306 4.51189 4.61470 4.78351 4.80914 4.91696 4.98177 5.32916 5.44082 5.51408 5.59134 5.84028 6.06622 6.31100 6.62974 6.80821 7.19321 7.34458 8.79623 Molecular weight = 245.11amu Principal moments of inertia in cm(-1) A = 0.033390 B = 0.006455 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.373725 B = 4336.937123 C = 4511.094818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.032 0.968 9 C 0.211 3.789 10 H 0.061 0.939 11 O -0.577 6.577 12 C 0.052 3.948 13 N -0.643 5.643 14 C 0.091 3.909 15 C 0.460 3.540 16 O -0.542 6.542 17 O -0.507 6.507 18 C -0.146 4.146 19 C 0.054 3.946 20 O -0.388 6.388 21 C 0.068 3.932 22 H 0.267 0.733 23 H 0.367 0.633 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.363 0.637 27 H 0.425 0.575 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 -6.604 0.860 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.120 1.120 7 C -0.606 4.606 8 H 0.050 0.950 9 C 0.153 3.847 10 H 0.079 0.921 11 O -0.383 6.383 12 C -0.077 4.077 13 N -0.278 5.278 14 C -0.004 4.004 15 C 0.300 3.700 16 O -0.431 6.431 17 O -0.321 6.321 18 C -0.183 4.183 19 C -0.023 4.023 20 O -0.306 6.306 21 C -0.009 4.009 22 H 0.075 0.925 23 H 0.215 0.785 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.184 0.816 27 H 0.287 0.713 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.298 -6.214 -0.574 17.451 hybrid contribution -1.640 -0.550 1.697 2.423 sum 14.658 -6.763 1.123 16.182 Atomic orbital electron populations 1.70095 1.08688 1.28467 1.50803 1.25900 0.95256 1.03836 0.92245 0.85934 0.82046 0.76943 0.78392 1.21248 1.22827 1.11998 1.21815 0.92524 0.93162 1.53134 0.94991 1.19486 0.90148 0.88829 0.86228 0.92099 1.86615 1.77231 1.57846 1.16655 1.22438 0.86234 0.98961 1.00043 1.60636 1.07988 1.12486 1.46659 1.22574 0.98677 0.87844 0.91262 1.24897 0.73227 0.87417 0.84432 1.90668 1.48490 1.19952 1.83973 1.84522 1.78821 1.48259 1.20472 1.23137 1.00419 1.01786 0.93000 1.23540 0.85100 1.03821 0.89790 1.89183 1.53882 1.54661 1.32871 1.23552 0.87928 0.94280 0.95134 0.92467 0.78550 0.91458 0.95634 0.81581 0.71281 0.90477 0.88182 0.87308 0.89612 0.87374 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.94 43.69 26.99 68.60 1.85 45.54 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.20 -8.55 5.31 99.48 0.53 -8.02 16 7 C -0.57 -30.78 9.34 25.60 0.24 -30.54 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C 0.21 9.00 2.58 29.85 0.08 9.08 16 10 H 0.06 2.69 7.57 -2.38 -0.02 2.67 16 11 O -0.58 -22.62 9.59 -148.98 -1.43 -24.05 16 12 C 0.05 1.86 4.65 86.30 0.40 2.26 16 13 N -0.64 -17.96 5.88 -468.84 -2.76 -20.72 16 14 C 0.09 2.32 0.90 3.80 0.00 2.32 16 15 C 0.46 12.85 6.00 71.23 0.43 13.28 16 16 O -0.54 -18.25 16.33 21.97 0.36 -17.89 16 17 O -0.51 -11.45 12.26 -51.43 -0.63 -12.08 16 18 C -0.15 -3.69 5.69 31.61 0.18 -3.51 16 19 C 0.05 1.12 7.63 72.49 0.55 1.67 16 20 O -0.39 -9.43 11.66 -148.98 -1.74 -11.16 16 21 C 0.07 1.45 6.88 72.48 0.50 1.95 16 22 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 23 H 0.37 12.76 9.04 -74.06 -0.67 12.09 16 24 H 0.07 2.50 6.48 -2.39 -0.02 2.48 16 25 H 0.03 0.94 6.79 -2.39 -0.02 0.92 16 26 H 0.36 9.55 8.07 -89.69 -0.72 8.83 16 27 H 0.43 6.24 9.10 -74.06 -0.67 5.56 16 28 H 0.08 2.18 6.76 -2.39 -0.02 2.17 16 29 H 0.10 2.58 6.79 -2.39 -0.02 2.56 16 30 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.98 8.06 -2.39 -0.02 1.96 16 33 H 0.11 1.97 7.86 -2.38 -0.02 1.95 16 Total: -1.00 -69.69 274.47 -2.28 -71.97 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -1.08 Total: 27.23 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 2.84 Total: -1.48 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.46 Total: -78.07 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -3.44 Total: -65.19 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.85 Total: 45.54 kcal Total: -69.69 -2.28 -71.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.205 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds