Wall clock time and date at job start Sun Mar 29 2020 23:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39852 * 125.38973 * 2 1 4 4 C 1.31184 * 109.94640 * 180.17242 * 3 2 1 5 5 N 1.38918 * 126.20564 * 179.87625 * 4 3 2 6 6 C 1.34786 * 119.99811 * 359.68858 * 5 4 3 7 7 O 1.21843 * 119.99897 * 359.97438 * 6 5 4 8 8 C 1.41355 * 119.99775 * 179.72533 * 6 5 4 9 9 H 1.08001 * 120.00409 * 0.27028 * 8 6 5 10 10 C 1.40150 * 120.00084 * 180.27068 * 8 6 5 11 11 N 1.30624 * 119.99693 * 0.02562 * 10 8 6 12 12 Si 1.86795 * 120.00231 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47234 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.47124 * 120.00293 * 12 10 8 15 15 H 1.48503 * 109.47163 * 240.00269 * 12 10 8 16 16 C 1.46487 * 107.59278 * 359.61044 * 4 3 2 17 17 C 1.39730 * 133.87786 * 180.24558 * 16 4 3 18 18 C 1.36640 * 119.79340 * 179.97438 * 17 16 4 19 19 C 1.38850 * 120.59708 * 0.02562 * 18 17 16 20 20 C 1.37755 * 120.63285 * 359.97438 * 19 18 17 21 21 C 1.37217 * 125.38182 * 179.73427 * 2 1 3 22 22 H 1.08997 * 109.46720 * 270.26810 * 1 2 3 23 23 H 1.09007 * 109.46917 * 30.26386 * 1 2 3 24 24 H 1.08995 * 109.47437 * 150.26449 * 1 2 3 25 25 H 0.97000 * 120.00504 * 179.68424 * 5 4 3 26 26 H 0.96999 * 119.99891 * 179.97438 * 11 10 8 27 27 H 1.07994 * 120.10280 * 359.97438 * 17 16 4 28 28 H 1.07998 * 119.70141 * 179.97438 * 18 17 16 29 29 H 1.07994 * 119.67834 * 180.02562 * 19 18 17 30 30 H 1.08005 * 120.12688 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2750 1.1401 0.0000 4 6 3.5394 0.7908 -0.0037 5 7 4.6288 1.6528 -0.0073 6 6 4.4330 2.9863 -0.0135 7 8 3.3005 3.4357 -0.0164 8 6 5.5416 3.8634 -0.0113 9 1 6.5454 3.4651 -0.0090 10 6 5.3380 5.2500 -0.0120 11 7 4.1239 5.7319 -0.0142 12 14 6.8028 6.4091 -0.0084 13 1 8.0598 5.6183 -0.0056 14 1 6.7597 7.2651 -1.2210 15 1 6.7535 7.2654 1.2040 16 6 3.5944 -0.6730 0.0031 17 6 4.6372 -1.6030 0.0074 18 6 4.3547 -2.9399 0.0142 19 6 3.0392 -3.3842 0.0162 20 6 1.9949 -2.4858 0.0120 21 6 2.2595 -1.1187 0.0052 22 1 -0.3633 0.0048 1.0277 23 1 -0.3633 0.8877 -0.5180 24 1 -0.3634 -0.8923 -0.5097 25 1 5.5305 1.2950 -0.0053 26 1 3.9830 6.6916 -0.0143 27 1 5.6633 -1.2663 0.0055 28 1 5.1619 -3.6574 0.0171 29 1 2.8329 -4.4442 0.0220 30 1 0.9747 -2.8405 0.0141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607241278.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:29 Heat of formation + Delta-G solvation = 33.072955 kcal Electronic energy + Delta-G solvation = -16824.254788 eV Core-core repulsion = 14006.061544 eV Total energy + Delta-G solvation = -2818.193245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08075 -39.65269 -37.85030 -35.78398 -34.57985 -33.05235 -31.17848 -30.61275 -29.05948 -26.69696 -24.16769 -22.99694 -22.72697 -20.62498 -19.63942 -18.22058 -17.82788 -17.12530 -16.48547 -16.41656 -15.91294 -15.80467 -15.01855 -14.87381 -14.57430 -14.53533 -13.84405 -13.42857 -13.23230 -12.92449 -12.73763 -12.66503 -12.56494 -11.98202 -11.87512 -11.47260 -11.41378 -10.97260 -10.00327 -9.88718 -9.51051 -8.40193 -8.37568 -7.04613 0.13073 0.68064 1.37009 1.39676 1.58075 1.62212 1.66757 2.21230 2.46350 2.76086 2.94191 3.52907 3.66506 3.81970 4.08633 4.23280 4.41671 4.50424 4.51971 4.59394 4.65783 4.98958 5.06336 5.20377 5.28184 5.54055 5.66370 5.81173 5.99324 6.05758 6.26814 6.35713 6.70867 6.81763 7.46593 8.38307 8.56213 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037793 B = 0.005859 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.705449 B = 4777.789065 C = 5503.337609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.430 5.430 3 N -0.317 5.317 4 C 0.310 3.690 5 N -0.649 5.649 6 C 0.518 3.482 7 O -0.592 6.592 8 C -0.560 4.560 9 H 0.098 0.902 10 C 0.028 3.972 11 N -0.805 5.805 12 Si 1.009 2.991 13 H -0.241 1.241 14 H -0.267 1.267 15 H -0.267 1.267 16 C -0.216 4.216 17 C -0.048 4.048 18 C -0.164 4.164 19 C -0.058 4.058 20 C -0.157 4.157 21 C 0.121 3.879 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.117 0.883 25 H 0.416 0.584 26 H 0.279 0.721 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.170 0.830 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -17.274 -0.026 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.219 5.219 3 N -0.141 5.141 4 C 0.043 3.957 5 N -0.301 5.301 6 C 0.327 3.673 7 O -0.475 6.475 8 C -0.595 4.595 9 H 0.116 0.884 10 C -0.189 4.189 11 N -0.433 5.433 12 Si 0.827 3.173 13 H -0.163 1.163 14 H -0.192 1.192 15 H -0.192 1.192 16 C -0.226 4.226 17 C -0.068 4.068 18 C -0.184 4.184 19 C -0.078 4.078 20 C -0.179 4.179 21 C 0.005 3.995 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.135 0.865 25 H 0.253 0.747 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.178 0.822 29 H 0.187 0.813 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.918 -15.718 -0.029 15.745 hybrid contribution 1.002 0.384 0.018 1.073 sum 0.084 -15.334 -0.011 15.334 Atomic orbital electron populations 1.21865 0.72774 1.04796 1.03442 1.48518 1.06717 1.00596 1.66106 1.77642 1.01658 1.06849 1.27924 1.20982 0.88615 0.88891 0.97224 1.43331 1.05755 1.05625 1.75394 1.17638 0.91027 0.80172 0.78475 1.90721 1.26430 1.75095 1.55245 1.20496 0.93966 0.91810 1.53224 0.88414 1.27143 1.00184 1.00759 0.90853 1.70206 1.24914 1.14620 1.33581 0.84817 0.77051 0.76838 0.78628 1.16317 1.19204 1.19210 1.19859 0.95766 0.89836 1.17154 1.20620 0.97527 0.92804 0.95840 1.21021 0.98193 0.94366 1.04821 1.21461 0.91379 1.00658 0.94341 1.20463 1.01915 0.87009 1.08481 1.19387 0.89809 0.90897 0.99432 0.90842 0.91042 0.86518 0.74655 0.91061 0.84468 0.82243 0.81289 0.83104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.24 11.39 127.77 1.46 4.69 16 2 N -0.43 -17.55 4.05 -361.00 -1.46 -19.01 16 3 N -0.32 -16.98 10.64 -51.03 -0.54 -17.52 16 4 C 0.31 15.38 8.03 135.39 1.09 16.46 16 5 N -0.65 -32.71 5.39 -311.52 -1.68 -34.38 16 6 C 0.52 31.77 7.52 85.01 0.64 32.41 16 7 O -0.59 -42.03 13.58 -4.81 -0.07 -42.10 16 8 C -0.56 -31.84 9.29 23.50 0.22 -31.62 16 9 H 0.10 4.83 7.85 -2.91 -0.02 4.81 16 10 C 0.03 1.58 5.50 85.34 0.47 2.05 16 11 N -0.80 -49.73 11.72 21.85 0.26 -49.47 16 12 Si 1.01 40.19 29.56 68.60 2.03 42.22 16 13 H -0.24 -8.68 7.11 99.48 0.71 -7.98 16 14 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 15 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 16 C -0.22 -8.34 6.37 -20.16 -0.13 -8.47 16 17 C -0.05 -1.35 10.05 22.26 0.22 -1.13 16 18 C -0.16 -3.39 9.97 22.04 0.22 -3.17 16 19 C -0.06 -1.09 10.02 22.30 0.22 -0.87 16 20 C -0.16 -3.78 10.00 22.40 0.22 -3.56 16 21 C 0.12 4.28 6.86 39.15 0.27 4.55 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 24 H 0.12 2.30 8.13 -2.39 -0.02 2.28 16 25 H 0.42 17.08 8.78 -92.71 -0.81 16.27 16 26 H 0.28 15.45 8.29 -92.71 -0.77 14.68 16 27 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -88.09 272.82 3.80 -84.29 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.36 Total: 24.62 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 4.90 Total: 11.35 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -3.43 Total: -120.38 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.07 Total: -42.10 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -88.09 3.80 -84.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607241278.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.364 kcal (2) G-P(sol) polarization free energy of solvation -88.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds