Wall clock time and date at job start Sun Mar 29 2020 23:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36823 * 120.00138 * 2 1 4 4 H 1.08003 * 120.00012 * 166.35070 * 3 2 1 5 5 C 1.38973 * 120.00106 * 346.35529 * 3 2 1 6 6 N 1.31418 * 119.99915 * 330.68420 * 5 3 2 7 7 Si 1.86799 * 120.00166 * 150.68658 * 5 3 2 8 8 H 1.48499 * 109.47212 * 94.99210 * 7 5 3 9 9 H 1.48504 * 109.47329 * 214.98890 * 7 5 3 10 10 H 1.48500 * 109.47347 * 334.98964 * 7 5 3 11 11 C 1.34782 * 119.99801 * 180.02562 * 2 1 3 12 12 O 1.21833 * 119.99824 * 185.67681 * 11 2 1 13 13 C 1.46125 * 120.00064 * 5.67583 * 11 2 1 14 14 N 1.32596 * 125.57069 * 5.96758 * 13 11 2 15 15 C 1.32008 * 109.87281 * 180.26168 * 14 13 11 16 16 C 1.39447 * 107.94530 * 359.97438 * 15 14 13 17 17 C 1.40354 * 133.41574 * 179.97438 * 16 15 14 18 18 C 1.36392 * 119.19263 * 179.97438 * 17 16 15 19 19 C 1.40292 * 119.59259 * 0.02562 * 18 17 16 20 20 C 1.35210 * 120.38666 * 0.02562 * 19 18 17 21 21 N 1.36173 * 120.59654 * 359.95891 * 20 19 18 22 22 H 1.09001 * 109.47134 * 214.06404 * 1 2 3 23 23 H 1.09000 * 109.47021 * 334.06045 * 1 2 3 24 24 H 1.08996 * 109.47137 * 94.06488 * 1 2 3 25 25 H 0.97007 * 120.00202 * 180.02562 * 6 5 3 26 26 H 1.07994 * 126.03167 * 179.97438 * 15 14 13 27 27 H 1.07995 * 120.40322 * 0.02609 * 17 16 15 28 28 H 1.08008 * 120.20236 * 179.97438 * 18 17 16 29 29 H 1.07999 * 119.80839 * 180.02562 * 19 18 17 30 30 H 1.08001 * 119.69882 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.2063 1.1981 0.2207 5 6 1.4838 2.3715 -0.2839 6 7 0.4357 2.3636 -1.0767 7 14 2.0792 3.9776 0.4613 8 1 2.9786 4.6656 -0.4993 9 1 0.9131 4.8480 0.7579 10 1 2.8190 3.6962 1.7177 11 6 2.1389 -1.1673 -0.0005 12 8 3.3528 -1.1699 0.1038 13 6 1.4136 -2.4296 -0.1262 14 7 0.1137 -2.5526 -0.3570 15 6 -0.2143 -3.8303 -0.4063 16 6 0.9427 -4.5794 -0.1954 17 6 1.2028 -5.9575 -0.1390 18 6 2.4776 -6.3851 0.0899 19 6 3.5031 -5.4440 0.2649 20 6 3.2335 -4.1202 0.2083 21 7 1.9652 -3.6803 -0.0198 22 1 -0.3633 -0.8513 0.5756 23 1 -0.3633 0.9241 0.4495 24 1 -0.3633 -0.0728 -1.0250 25 1 -0.0286 3.1919 -1.2752 26 1 -1.2042 -4.2258 -0.5795 27 1 0.4034 -6.6706 -0.2760 28 1 2.6960 -7.4419 0.1369 29 1 4.5138 -5.7787 0.4460 30 1 4.0315 -3.4054 0.3451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626160489.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:18 Heat of formation + Delta-G solvation = 54.591755 kcal Electronic energy + Delta-G solvation = -17222.723131 eV Core-core repulsion = 14405.463012 eV Total energy + Delta-G solvation = -2817.260119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.76546 -40.15650 -38.34937 -36.81287 -34.25558 -33.81914 -31.89444 -29.59928 -28.13506 -26.73556 -24.84543 -24.17699 -23.04858 -21.34068 -19.08109 -18.38587 -17.83595 -17.44295 -17.12407 -16.70168 -16.23558 -16.07257 -15.58227 -15.49697 -14.97081 -14.32262 -13.81640 -13.47675 -13.34980 -13.13103 -12.97548 -12.69190 -12.57354 -12.39305 -12.12358 -11.68021 -11.18930 -10.93589 -10.69866 -10.31783 -9.88028 -8.56385 -8.45812 -5.95713 -0.11974 -0.04117 1.27588 1.38375 1.47698 1.54878 1.60650 2.25494 2.41866 2.52477 3.00421 3.03974 3.53870 3.59996 3.86348 3.89394 4.02981 4.22385 4.46462 4.77998 4.80696 4.91467 5.01150 5.14504 5.25729 5.27596 5.38865 5.57430 5.70726 5.94869 6.06105 6.31903 6.77389 7.02334 7.28991 7.87804 8.51416 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047463 B = 0.006244 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.796090 B = 4482.943630 C = 4999.340380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.420 5.420 3 C -0.364 4.364 4 H 0.083 0.917 5 C 0.009 3.991 6 N -0.867 5.867 7 Si 0.993 3.007 8 H -0.269 1.269 9 H -0.261 1.261 10 H -0.269 1.269 11 C 0.492 3.508 12 O -0.642 6.642 13 C 0.066 3.934 14 N -0.430 5.430 15 C -0.034 4.034 16 C 0.001 3.999 17 C -0.076 4.076 18 C -0.106 4.106 19 C -0.112 4.112 20 C 0.018 3.982 21 N -0.329 5.329 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.282 0.718 26 H 0.222 0.778 27 H 0.192 0.808 28 H 0.189 0.811 29 H 0.186 0.814 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -16.784 2.649 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.135 5.135 3 C -0.491 4.491 4 H 0.101 0.899 5 C -0.197 4.197 6 N -0.502 5.502 7 Si 0.814 3.186 8 H -0.194 1.194 9 H -0.185 1.185 10 H -0.194 1.194 11 C 0.282 3.718 12 O -0.533 6.533 13 C -0.180 4.180 14 N -0.147 5.147 15 C -0.195 4.195 16 C -0.111 4.111 17 C -0.096 4.096 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.105 4.105 21 N 0.003 4.997 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.238 0.762 27 H 0.209 0.791 28 H 0.206 0.794 29 H 0.203 0.797 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.302 -15.708 2.521 15.962 hybrid contribution 0.793 0.659 0.075 1.034 sum -0.508 -15.049 2.596 15.280 Atomic orbital electron populations 1.21568 0.78444 1.00253 1.00849 1.43551 1.07290 1.04108 1.58502 1.19685 0.95959 0.83535 1.49927 0.89946 1.26224 0.96497 1.02708 0.94311 1.70245 1.21546 1.30665 1.27793 0.84977 0.78554 0.76101 0.78926 1.19393 1.18488 1.19373 1.16434 0.85976 0.82428 0.86951 1.90553 1.14398 1.87320 1.61022 1.22231 0.89622 0.85625 1.20558 1.70197 1.08993 1.21796 1.13730 1.23506 0.99296 0.87026 1.09712 1.20711 0.88953 0.92491 1.08931 1.21123 1.00011 0.89772 0.98655 1.21716 0.91130 1.02154 0.97743 1.21479 1.03401 0.89114 0.99261 1.22227 0.85249 0.98847 1.04170 1.42562 1.08651 1.07113 1.41419 0.90929 0.92705 0.94200 0.90806 0.76165 0.79070 0.79398 0.79709 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.96 7.70 127.77 0.98 7.94 16 2 N -0.42 -24.87 3.02 -664.04 -2.00 -26.88 16 3 C -0.36 -22.17 9.33 84.09 0.78 -21.39 16 4 H 0.08 5.29 7.37 -2.91 -0.02 5.27 16 5 C 0.01 0.47 4.68 84.93 0.40 0.86 16 6 N -0.87 -48.15 11.29 21.67 0.24 -47.91 16 7 Si 0.99 42.82 29.64 68.60 2.03 44.86 16 8 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 9 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 C 0.49 28.61 7.57 86.29 0.65 29.26 16 12 O -0.64 -39.81 14.98 -4.77 -0.07 -39.88 16 13 C 0.07 3.25 7.47 135.47 1.01 4.27 16 14 N -0.43 -18.89 7.77 -187.51 -1.46 -20.35 16 15 C -0.03 -1.11 12.00 84.96 1.02 -0.09 16 16 C 0.00 0.04 6.80 39.10 0.27 0.30 16 17 C -0.08 -1.44 10.11 22.35 0.23 -1.22 16 18 C -0.11 -1.66 10.08 22.34 0.23 -1.43 16 19 C -0.11 -2.37 9.98 22.07 0.22 -2.15 16 20 C 0.02 0.60 10.52 83.32 0.88 1.48 16 21 N -0.33 -13.13 2.96 -340.19 -1.01 -14.14 16 22 H 0.07 3.55 5.82 -2.39 -0.01 3.53 16 23 H 0.05 2.90 6.53 -2.39 -0.02 2.88 16 24 H 0.04 2.17 8.02 -2.39 -0.02 2.15 16 25 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 26 H 0.22 4.97 8.06 -2.91 -0.02 4.95 16 27 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 29 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.15 5.75 6.79 -2.91 -0.02 5.73 16 Total: -1.00 -79.93 262.28 5.57 -74.36 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.17 Total: 12.10 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.66 Total: 17.84 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.22 Total: -109.27 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.07 Total: -39.88 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.86 kcal Total: -79.93 5.57 -74.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626160489.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.950 kcal (2) G-P(sol) polarization free energy of solvation -79.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds