Wall clock time and date at job start Sun Mar 29 2020 23:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48506 * 109.46764 * 269.99974 * 3 2 1 5 5 H 1.48500 * 109.47039 * 29.99737 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99906 * 3 2 1 7 7 C 1.37878 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00337 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99277 * 179.97438 * 10 9 7 12 12 O 1.21522 * 120.00806 * 0.02562 * 11 10 9 13 13 C 1.48060 * 119.99350 * 180.02562 * 11 10 9 14 14 C 1.39776 * 119.47027 * 180.02562 * 13 11 10 15 15 C 1.38132 * 119.57329 * 180.02562 * 14 13 11 16 16 C 1.39255 * 118.38227 * 359.96502 * 15 14 13 17 17 N 1.37350 * 133.61520 * 179.97438 * 16 15 14 18 18 H 0.97007 * 125.04877 * 359.97438 * 17 16 15 19 19 C 1.36713 * 109.89366 * 180.02562 * 17 16 15 20 20 C 1.34285 * 110.02606 * 359.97438 * 19 17 16 21 21 C 1.41193 * 119.09593 * 0.02562 * 16 15 14 22 22 N 1.32443 * 119.47486 * 0.02562 * 13 11 10 23 23 H 0.97000 * 119.99378 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46789 * 59.99680 * 9 7 2 25 25 H 1.08995 * 109.47099 * 300.00101 * 9 7 2 26 26 H 0.97000 * 120.00197 * 0.02562 * 10 9 7 27 27 H 1.08000 * 120.21068 * 0.02562 * 14 13 11 28 28 H 1.08001 * 120.80714 * 180.24050 * 15 14 13 29 29 H 1.08008 * 124.98599 * 180.02562 * 19 17 16 30 30 H 1.08002 * 126.48277 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7535 -4.8834 0.0011 12 8 0.5587 -5.1054 0.0011 13 6 2.7156 -6.0088 0.0016 14 6 2.2375 -7.3222 0.0016 15 6 3.1332 -8.3737 0.0027 16 6 4.4951 -8.0832 0.0030 17 7 5.6292 -8.8580 0.0044 18 1 5.6412 -9.8280 0.0059 19 6 6.7385 -8.0590 0.0046 20 6 6.3743 -6.7665 0.0028 21 6 4.9092 -6.7334 0.0028 22 7 4.0155 -5.7548 0.0021 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 3.1566 -3.4355 0.0009 27 1 1.1746 -7.5136 0.0008 28 1 2.7858 -9.3963 -0.0012 29 1 7.7582 -8.4151 0.0052 30 1 7.0359 -5.9129 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626389392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:14 Heat of formation + Delta-G solvation = 2.182972 kcal Electronic energy + Delta-G solvation = -16312.166702 eV Core-core repulsion = 13492.633967 eV Total energy + Delta-G solvation = -2819.532735 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.54964 -40.64879 -38.44864 -36.22288 -34.45361 -33.78885 -31.35399 -30.45581 -29.21069 -25.91941 -24.53010 -23.49692 -21.90623 -21.45690 -19.52160 -19.11345 -17.90421 -17.77517 -16.94941 -16.44870 -16.19596 -15.76609 -15.68703 -15.16096 -14.42580 -14.12382 -14.09186 -13.93362 -13.78355 -13.63691 -13.28626 -12.93698 -12.70708 -12.24097 -11.50740 -11.41140 -11.27460 -10.80894 -10.43189 -9.93797 -9.44649 -9.08318 -8.29333 -6.46046 -0.24486 0.03970 1.42763 1.46103 1.57677 1.68450 1.83635 2.05064 2.29499 2.49102 2.94314 3.05257 3.08232 3.65926 3.84701 4.02482 4.03000 4.47852 4.56228 4.70370 4.95486 4.99549 5.10730 5.20883 5.38445 5.43496 5.45855 5.65441 5.82396 5.87277 6.60971 6.62099 6.67380 6.97169 7.20100 7.36289 8.83139 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034863 B = 0.004842 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.956166 B = 5781.000485 C = 6568.812580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.987 3.013 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.264 3.736 10 N -0.690 5.690 11 C 0.552 3.448 12 O -0.589 6.589 13 C 0.052 3.948 14 C -0.113 4.113 15 C -0.075 4.075 16 C 0.061 3.939 17 N -0.570 5.570 18 H 0.441 0.559 19 C 0.107 3.893 20 C -0.224 4.224 21 C 0.055 3.945 22 N -0.448 5.448 23 H 0.270 0.730 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.410 0.590 27 H 0.152 0.848 28 H 0.183 0.817 29 H 0.235 0.765 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.895 -20.967 0.010 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.597 4.597 8 H 0.096 0.904 9 C 0.141 3.859 10 N -0.338 5.338 11 C 0.338 3.662 12 O -0.471 6.471 13 C -0.094 4.094 14 C -0.136 4.136 15 C -0.103 4.103 16 C -0.052 4.052 17 N -0.175 5.175 18 H 0.283 0.717 19 C -0.021 4.021 20 C -0.249 4.249 21 C -0.082 4.082 22 N -0.160 5.160 23 H 0.079 0.921 24 H 0.012 0.988 25 H 0.013 0.987 26 H 0.246 0.754 27 H 0.169 0.831 28 H 0.200 0.800 29 H 0.251 0.749 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 16.245 -20.219 0.013 25.937 hybrid contribution -0.296 0.094 -0.010 0.311 sum 15.949 -20.125 0.003 25.679 Atomic orbital electron populations 1.70133 1.08167 1.28679 1.49734 1.26057 0.95848 1.03790 0.93600 0.85122 0.78402 0.76756 0.78721 1.19400 1.20432 1.18247 1.21572 0.94122 0.90661 1.53384 0.90443 1.18688 0.88577 0.83965 0.94621 1.46157 1.11692 1.05312 1.70610 1.18520 0.87467 0.83530 0.76703 1.90677 1.17282 1.85369 1.53723 1.20716 0.89580 0.93317 1.05790 1.21808 1.02170 0.90764 0.98820 1.20738 0.88126 1.01061 1.00401 1.19334 0.90200 0.92398 1.03234 1.41661 1.02711 1.09834 1.63280 0.71745 1.22720 0.93273 0.88577 0.97537 1.21927 0.89356 0.98825 1.14754 1.20798 0.95626 0.87996 1.03767 1.66785 1.01199 1.37839 1.10150 0.92075 0.98754 0.98734 0.75443 0.83080 0.79969 0.74910 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.99 44.40 29.54 68.60 2.03 46.42 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.56 -32.94 9.28 25.60 0.24 -32.70 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.26 15.80 5.43 85.63 0.46 16.27 16 10 N -0.69 -35.16 5.54 -469.50 -2.60 -37.76 16 11 C 0.55 26.81 7.81 86.85 0.68 27.49 16 12 O -0.59 -31.98 16.30 -3.78 -0.06 -32.04 16 13 C 0.05 2.02 6.74 42.03 0.28 2.31 16 14 C -0.11 -3.44 9.60 22.62 0.22 -3.22 16 15 C -0.08 -1.57 10.18 22.49 0.23 -1.34 16 16 C 0.06 1.27 7.29 39.25 0.29 1.56 16 17 N -0.57 -5.97 6.05 -187.39 -1.13 -7.10 16 18 H 0.44 0.93 8.96 -92.70 -0.83 0.10 16 19 C 0.11 1.02 11.81 83.03 0.98 2.00 16 20 C -0.22 -4.36 11.08 23.54 0.26 -4.10 16 21 C 0.06 1.58 7.52 41.93 0.32 1.89 16 22 N -0.45 -16.49 9.57 -174.25 -1.67 -18.16 16 23 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.41 19.27 7.63 -92.71 -0.71 18.56 16 27 H 0.15 4.48 7.61 -2.91 -0.02 4.46 16 28 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.23 -0.36 8.06 -2.91 -0.02 -0.38 16 30 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -82.94 274.36 0.92 -82.01 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.34 Total: 13.18 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 4.41 Total: 11.01 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -5.12 Total: -120.59 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.06 Total: -32.04 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -82.94 0.92 -82.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626389392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.198 kcal (2) G-P(sol) polarization free energy of solvation -82.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds