Wall clock time and date at job start Sun Mar 29 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00236 * 2 1 4 4 H 1.48507 * 109.47123 * 240.00412 * 3 2 1 5 5 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47329 * 120.00256 * 3 2 1 7 7 C 1.37882 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99636 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00228 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99837 * 0.02562 * 11 10 9 13 13 C 1.47603 * 120.00190 * 180.02562 * 11 10 9 14 14 C 1.38561 * 119.73926 * 0.02562 * 13 11 10 15 15 N 1.33772 * 122.05240 * 180.02562 * 14 13 11 16 16 H 0.96998 * 119.62991 * 179.97438 * 15 14 13 17 17 C 1.37234 * 120.74058 * 359.95704 * 15 14 13 18 18 N 1.31992 * 134.46435 * 180.02562 * 17 15 14 19 19 C 1.33417 * 110.92846 * 179.97438 * 18 17 15 20 20 C 1.35783 * 110.88935 * 0.24627 * 19 18 17 21 21 C 1.41386 * 106.45568 * 359.61394 * 20 19 18 22 22 C 1.38758 * 135.65965 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.00170 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47058 * 60.00645 * 9 7 2 25 25 H 1.08993 * 109.47677 * 300.00035 * 9 7 2 26 26 H 0.97003 * 120.00144 * 0.02562 * 10 9 7 27 27 H 1.07999 * 118.97406 * 0.02562 * 14 13 11 28 28 H 1.08002 * 124.55123 * 179.97438 * 19 18 17 29 29 H 1.08003 * 126.77400 * 179.75188 * 20 19 18 30 30 H 1.08002 * 120.73134 * 0.33951 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5584 -5.1056 -0.0020 13 6 2.7130 -6.0052 -0.0005 14 6 4.0741 -5.7459 0.0011 15 7 4.9838 -6.7267 0.0012 16 1 5.9281 -6.5050 0.0020 17 6 4.5959 -8.0431 0.0005 18 7 5.2382 -9.1962 0.0008 19 6 4.3814 -10.2189 0.0004 20 6 3.0981 -9.7754 -0.0057 21 6 3.1624 -8.3631 -0.0002 22 6 2.2387 -7.3276 -0.0015 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5572 0.8896 26 1 3.1567 -3.4355 -0.0002 27 1 4.4112 -4.7198 0.0024 28 1 4.6700 -11.2597 0.0001 29 1 2.2044 -10.3819 -0.0112 30 1 1.1786 -7.5337 -0.0027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635343572.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:56 Heat of formation + Delta-G solvation = 20.467260 kcal Electronic energy + Delta-G solvation = -16290.541375 eV Core-core repulsion = 13471.801507 eV Total energy + Delta-G solvation = -2818.739869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.52182 -40.59820 -38.93845 -36.22882 -34.88616 -34.36331 -31.13002 -29.85602 -28.98377 -25.42223 -25.14778 -23.87402 -22.25881 -21.34465 -19.39360 -18.51885 -18.18941 -17.43692 -17.37761 -16.79102 -16.49272 -16.10156 -15.80306 -15.44800 -14.69238 -14.21856 -13.98673 -13.92514 -13.43368 -13.41056 -12.91068 -12.80433 -12.64944 -12.21657 -11.81943 -11.47414 -11.06485 -10.76244 -10.59121 -9.91227 -9.20828 -8.84736 -8.24994 -6.41186 -0.81717 -0.05595 1.31932 1.48199 1.51147 1.59094 1.84316 2.26390 2.38446 2.49356 2.59511 3.11195 3.18738 3.41724 3.58106 3.90518 4.09952 4.14858 4.62486 4.80284 4.92776 4.99624 5.18320 5.29536 5.29966 5.46492 5.61430 5.68370 5.79251 5.87534 6.11472 6.68445 6.84751 7.00004 7.26184 7.42788 8.86876 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.052309 B = 0.004361 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.152471 B = 6419.609939 C = 6939.617563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.560 3.440 12 O -0.597 6.597 13 C -0.242 4.242 14 C 0.225 3.775 15 N -0.466 5.466 16 H 0.448 0.552 17 C 0.228 3.772 18 N -0.552 5.552 19 C 0.031 3.969 20 C -0.230 4.230 21 C -0.200 4.200 22 C 0.085 3.915 23 H 0.267 0.733 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.409 0.591 27 H 0.230 0.770 28 H 0.181 0.819 29 H 0.152 0.848 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.044 -10.823 0.002 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.592 4.592 8 H 0.110 0.890 9 C 0.142 3.858 10 N -0.347 5.347 11 C 0.348 3.652 12 O -0.479 6.479 13 C -0.252 4.252 14 C 0.077 3.923 15 N -0.060 5.060 16 H 0.291 0.709 17 C -0.021 4.021 18 N -0.272 5.272 19 C -0.111 4.111 20 C -0.252 4.252 21 C -0.208 4.208 22 C 0.060 3.940 23 H 0.076 0.924 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.247 0.753 27 H 0.247 0.753 28 H 0.198 0.802 29 H 0.170 0.830 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.151 -11.125 0.001 17.225 hybrid contribution -0.584 0.940 0.000 1.107 sum 12.567 -10.185 0.002 16.176 Atomic orbital electron populations 1.70125 1.08333 1.28556 1.50031 1.26023 0.95659 1.03830 0.94021 0.85253 0.77893 0.76810 0.79539 1.18550 1.21786 1.18559 1.21609 0.94599 0.90238 1.52738 0.89015 1.18615 0.88671 0.83886 0.94603 1.45997 1.11307 1.04848 1.72568 1.18152 0.87646 0.83137 0.76267 1.90752 1.18432 1.85292 1.53428 1.19175 0.92727 0.93449 1.19839 1.22835 0.87846 0.94542 0.87050 1.40279 1.12411 1.01818 1.51496 0.70936 1.20621 0.91152 0.86049 1.04240 1.69490 1.35798 0.96104 1.25807 1.22707 0.89389 0.97963 1.01065 1.21691 0.99589 0.91709 1.12247 1.20267 0.92410 0.95368 1.12722 1.21451 1.00549 0.89952 0.81998 0.92375 0.99024 0.99031 0.75307 0.75347 0.80240 0.83029 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.76 13.29 21.45 0.28 -53.48 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.98 39.47 29.54 68.60 2.03 41.49 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.55 -27.33 9.28 25.60 0.24 -27.09 16 8 H 0.09 3.88 7.60 -2.91 -0.02 3.86 16 9 C 0.26 13.25 5.43 85.63 0.46 13.72 16 10 N -0.70 -25.02 5.49 -469.94 -2.58 -27.60 16 11 C 0.56 20.27 7.76 86.72 0.67 20.95 16 12 O -0.60 -27.92 16.34 -4.00 -0.07 -27.98 16 13 C -0.24 -6.27 5.86 -20.18 -0.12 -6.39 16 14 C 0.22 3.43 10.64 84.47 0.90 4.32 16 15 N -0.47 -7.00 5.27 -186.74 -0.98 -7.98 16 16 H 0.45 3.13 8.91 -92.71 -0.83 2.30 16 17 C 0.23 5.69 8.64 135.83 1.17 6.87 16 18 N -0.55 -15.43 11.17 -188.98 -2.11 -17.54 16 19 C 0.03 0.81 11.69 83.88 0.98 1.79 16 20 C -0.23 -6.03 10.99 22.48 0.25 -5.78 16 21 C -0.20 -5.52 6.41 -20.12 -0.13 -5.65 16 22 C 0.08 2.37 9.71 22.94 0.22 2.59 16 23 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 26 H 0.41 10.39 6.26 -92.71 -0.58 9.81 16 27 H 0.23 1.35 6.25 -2.91 -0.02 1.33 16 28 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.14 4.08 7.67 -2.91 -0.02 4.06 16 Total: -1.00 -77.16 271.67 1.48 -75.68 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.20 Total: 11.40 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.11 Total: 6.02 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.39 Total: -106.61 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.07 Total: -27.98 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Total: -77.16 1.48 -75.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343572.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.150 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds