Wall clock time and date at job start Sun Mar 29 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42892 * 112.90598 * 2 1 4 4 C 1.53776 * 113.61275 * 228.74621 * 2 1 3 5 5 C 1.53784 * 87.08089 * 220.01830 * 4 2 1 6 6 H 1.09001 * 113.61219 * 140.06694 * 5 4 2 7 7 N 1.46499 * 113.61535 * 270.88673 * 5 4 2 8 8 C 1.34773 * 119.99849 * 205.00119 * 7 5 4 9 9 O 1.21283 * 120.00144 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99721 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.46942 * 180.02562 * 10 8 7 12 12 C 1.76195 * 100.00017 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00294 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00153 * 180.02562 * 12 11 10 15 15 N 1.31632 * 120.00093 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00020 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 90.00077 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00257 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00251 * 16 14 12 20 20 C 1.53775 * 87.08012 * 25.43629 * 5 4 2 21 21 H 1.09010 * 109.47082 * 191.25131 * 1 2 3 22 22 H 1.09005 * 109.47217 * 311.25320 * 1 2 3 23 23 H 1.08996 * 109.47190 * 71.25520 * 1 2 3 24 24 H 0.96698 * 114.00417 * 48.74455 * 3 2 1 25 25 H 1.09001 * 113.61323 * 105.47116 * 4 2 1 26 26 H 1.08998 * 113.61861 * 334.56996 * 4 2 1 27 27 H 0.97000 * 119.99965 * 24.99907 * 7 5 4 28 28 H 1.08997 * 109.46935 * 60.00104 * 10 8 7 29 29 H 1.09000 * 109.47082 * 299.99666 * 10 8 7 30 30 H 0.97006 * 119.99745 * 179.97438 * 15 14 12 31 31 H 1.09001 * 113.61842 * 89.11512 * 20 5 4 32 32 H 1.09002 * 113.61516 * 220.01920 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0862 1.3162 0.0000 4 6 2.1460 -0.9291 -1.0593 5 6 3.1923 -1.3136 0.0001 6 1 3.4454 -2.3738 -0.0009 7 7 4.3734 -0.4468 0.0001 8 6 5.5487 -0.9094 0.4701 9 8 5.6286 -2.0431 0.8935 10 6 6.7638 -0.0179 0.4695 11 16 8.1745 -0.9203 1.1562 12 6 9.4186 0.3219 1.0396 13 1 9.1762 1.2924 0.6322 14 6 10.7104 0.0531 1.4702 15 7 11.6399 0.9810 1.3827 16 14 11.1299 -1.6256 2.1741 17 1 11.5739 -2.5248 1.0788 18 1 9.9288 -2.2012 2.8309 19 1 12.2205 -1.4854 3.1722 20 6 2.1460 -0.9291 1.0594 21 1 -0.3634 -1.0080 0.2005 22 1 -0.3634 0.6777 0.7726 23 1 -0.3633 0.3302 -0.9731 24 1 1.7027 1.9053 0.6641 25 1 2.5650 -0.3989 -1.9145 26 1 1.4945 -1.7536 -1.3489 27 1 4.3094 0.4600 -0.3383 28 1 6.5666 0.8654 1.0769 29 1 6.9904 0.2869 -0.5522 30 1 12.5426 0.7932 1.6840 31 1 1.4945 -1.7536 1.3490 32 1 2.5650 -0.3988 1.9146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638325615.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:06 Heat of formation + Delta-G solvation = -98.206331 kcal Electronic energy + Delta-G solvation = -15433.002198 eV Core-core repulsion = 12712.267456 eV Total energy + Delta-G solvation = -2720.734741 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43607 -39.75931 -36.06170 -34.68617 -34.12391 -31.13254 -29.48496 -27.86255 -26.79949 -23.67101 -22.05157 -20.48352 -19.89903 -18.00523 -17.34674 -17.23416 -17.01060 -16.53701 -16.01946 -15.85113 -15.28823 -14.97180 -14.75107 -14.44075 -13.82671 -13.52459 -13.35505 -13.06356 -13.00834 -12.77472 -12.60045 -12.51749 -12.20989 -11.86957 -11.25012 -11.17870 -11.01188 -10.61138 -10.55842 -10.04255 -9.01262 -8.52461 -6.23810 0.97241 1.31179 1.46087 1.52839 1.55093 2.20508 2.25835 2.70047 2.85679 3.13813 3.47305 3.66527 3.84838 3.90463 4.02245 4.20724 4.43809 4.59341 4.63096 4.74138 4.83891 4.86615 4.95392 5.09933 5.18206 5.34058 5.61018 5.69807 6.10248 6.49138 6.88878 6.92430 7.19595 8.60171 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.058409 B = 0.004567 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.263845 B = 6129.665891 C = 6415.657854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 O -0.560 6.560 4 C -0.126 4.126 5 C 0.106 3.894 6 H 0.085 0.915 7 N -0.690 5.690 8 C 0.536 3.464 9 O -0.564 6.564 10 C -0.111 4.111 11 S -0.171 6.171 12 C -0.532 4.532 13 H 0.061 0.939 14 C 0.046 3.954 15 N -0.917 5.917 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.237 1.237 19 H -0.257 1.257 20 C -0.175 4.175 21 H 0.080 0.920 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.395 0.605 25 H 0.077 0.923 26 H 0.131 0.869 27 H 0.416 0.584 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.278 0.722 31 H 0.114 0.886 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.642 -1.536 -3.379 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 O -0.369 6.369 4 C -0.164 4.164 5 C 0.001 3.999 6 H 0.103 0.897 7 N -0.343 5.343 8 C 0.321 3.679 9 O -0.443 6.443 10 C -0.262 4.262 11 S 0.055 5.945 12 C -0.680 4.680 13 H 0.079 0.921 14 C -0.159 4.159 15 N -0.555 5.555 16 Si 0.737 3.263 17 H -0.186 1.186 18 H -0.161 1.161 19 H -0.181 1.181 20 C -0.214 4.214 21 H 0.099 0.901 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.246 0.754 25 H 0.096 0.904 26 H 0.149 0.851 27 H 0.253 0.747 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.994 -3.569 -3.146 24.461 hybrid contribution 0.458 1.743 0.117 1.806 sum -23.535 -1.826 -3.029 23.799 Atomic orbital electron populations 1.22238 0.92779 1.03875 1.03100 1.22189 0.93014 0.82591 0.95373 1.86393 1.66441 1.22240 1.61834 1.23518 0.96769 0.99481 0.96617 1.21934 0.84555 0.94824 0.98623 0.89714 1.45488 1.07550 1.17736 1.63568 1.19972 0.84340 0.86937 0.76621 1.90668 1.85307 1.20732 1.47554 1.23260 0.94705 1.02015 1.06221 1.84647 1.04284 1.22717 1.82853 1.22476 0.96720 1.00330 1.48432 0.92092 1.25573 0.94938 1.00928 0.94463 1.70020 1.03451 1.35407 1.46634 0.85854 0.80534 0.79814 0.80079 1.18586 1.16102 1.18146 1.24217 0.98323 1.01239 0.97621 0.90146 0.91286 0.91415 0.75447 0.90402 0.85096 0.74670 0.87095 0.87103 0.91299 0.86775 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.44 71.98 0.68 -0.71 16 2 C 0.11 1.49 1.82 -10.27 -0.02 1.47 16 3 O -0.56 -8.52 12.14 -148.98 -1.81 -10.33 16 4 C -0.13 -1.91 7.22 31.12 0.22 -1.68 16 5 C 0.11 2.38 4.32 45.52 0.20 2.58 16 6 H 0.08 2.22 7.46 -2.39 -0.02 2.20 16 7 N -0.69 -18.64 5.15 -440.04 -2.27 -20.90 16 8 C 0.54 19.68 7.85 87.66 0.69 20.37 16 9 O -0.56 -25.07 15.46 -3.04 -0.05 -25.11 16 10 C -0.11 -4.43 6.16 71.24 0.44 -3.99 16 11 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 12 C -0.53 -31.67 10.04 67.95 0.68 -30.99 16 13 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 14 C 0.05 2.76 5.50 84.86 0.47 3.23 16 15 N -0.92 -56.54 13.97 21.65 0.30 -56.24 16 16 Si 0.92 45.55 27.74 68.60 1.90 47.45 16 17 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 C -0.18 -3.05 7.26 31.12 0.23 -2.83 16 21 H 0.08 0.54 7.94 -2.38 -0.02 0.52 16 22 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 23 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.39 3.31 9.04 -74.06 -0.67 2.64 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.13 1.33 8.10 -2.39 -0.02 1.31 16 27 H 0.42 9.74 7.59 -92.71 -0.70 9.04 16 28 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 29 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 30 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 31 H 0.11 1.55 7.96 -2.39 -0.02 1.54 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.51 286.86 0.34 -74.16 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.28 Total: 13.49 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 3.58 Total: -12.55 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.96 Total: -77.15 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.86 Total: -35.44 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -74.51 0.34 -74.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638325615.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.045 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds