Wall clock time and date at job start Sun Mar 29 2020 23:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36610 * 125.69332 * 2 1 4 4 N 1.36998 * 107.06481 * 179.97438 * 3 2 1 5 5 C 1.36679 * 132.26184 * 180.02562 * 4 3 2 6 6 C 1.35169 * 120.94660 * 179.97438 * 5 4 3 7 7 C 1.40704 * 120.05789 * 0.03948 * 6 5 4 8 8 N 1.37977 * 120.39807 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99904 * 213.37196 * 8 7 6 10 10 O 1.22064 * 120.00379 * 5.27468 * 9 8 7 11 11 C 1.39562 * 119.99895 * 185.27269 * 9 8 7 12 12 H 1.08006 * 120.00176 * 0.02562 * 11 9 8 13 13 C 1.39816 * 120.00193 * 179.97438 * 11 9 8 14 14 N 1.30825 * 120.00093 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 120.00186 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46748 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46843 * 120.00339 * 15 13 11 18 18 H 1.48502 * 109.46951 * 240.00320 * 15 13 11 19 19 C 1.39907 * 119.20783 * 359.97438 * 7 6 5 20 20 C 1.37156 * 106.88620 * 0.02562 * 4 3 2 21 21 N 1.32432 * 125.69227 * 179.69267 * 2 1 3 22 22 H 1.08992 * 109.47041 * 90.00346 * 1 2 3 23 23 H 1.08995 * 109.47073 * 329.99810 * 1 2 3 24 24 H 1.09002 * 109.46665 * 210.00290 * 1 2 3 25 25 H 1.08007 * 126.46579 * 359.96547 * 3 2 1 26 26 H 1.07999 * 119.52167 * 359.97360 * 5 4 3 27 27 H 1.08001 * 119.97060 * 179.97438 * 6 5 4 28 28 H 0.97005 * 119.99620 * 33.36628 * 8 7 6 29 29 H 0.96992 * 120.00274 * 179.97438 * 14 13 11 30 30 H 1.07994 * 120.44247 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3040 1.1095 0.0000 4 7 3.6022 0.6719 0.0006 5 6 4.7964 1.3368 0.0013 6 6 5.9677 0.6621 0.0023 7 6 5.9705 -0.7449 0.0018 8 7 7.1619 -1.4407 0.0023 9 6 7.2527 -2.6220 -0.6402 10 8 6.3121 -3.0306 -1.3023 11 6 8.4221 -3.3782 -0.5484 12 1 9.2542 -3.0170 0.0378 13 6 8.5161 -4.6040 -1.2143 14 7 7.5080 -5.0419 -1.9240 15 14 10.0811 -5.6165 -1.0909 16 1 11.0640 -4.9058 -0.2342 17 1 9.7688 -6.9393 -0.4927 18 1 10.6541 -5.8094 -2.4473 19 6 4.7506 -1.4301 0.0008 20 6 3.5605 -0.6991 0.0003 21 7 2.2796 -1.0755 0.0058 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 0.8899 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.9731 2.1376 -0.0005 26 1 4.8042 2.4167 0.0010 27 1 6.9022 1.2035 0.0024 28 1 7.9343 -1.0796 0.4649 29 1 7.5734 -5.8920 -2.3863 30 1 4.7295 -2.5098 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641206962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:46 Heat of formation + Delta-G solvation = 51.063937 kcal Electronic energy + Delta-G solvation = -16735.987939 eV Core-core repulsion = 13918.574842 eV Total energy + Delta-G solvation = -2817.413097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.14576 -38.63848 -36.44462 -34.00731 -32.54537 -31.73012 -31.01380 -28.54137 -27.37287 -25.86168 -22.98423 -22.15119 -20.56886 -19.58484 -18.02010 -17.13283 -16.46556 -15.69892 -15.45159 -15.21575 -14.33022 -14.04922 -13.85341 -13.10304 -13.02019 -12.76057 -12.63276 -12.38845 -12.04555 -11.51640 -11.39352 -11.21821 -11.00831 -10.70841 -10.43871 -10.32913 -9.52730 -9.08050 -8.48088 -8.19272 -7.79526 -6.65816 -6.43877 -5.02065 1.26268 1.76638 3.00336 3.06231 3.09402 3.13956 3.24209 3.91648 4.04775 4.38708 4.40050 4.70592 4.87109 5.08620 5.44719 5.49814 5.60812 5.71654 5.80670 5.85190 5.93088 6.00833 6.20404 6.54483 6.76928 7.02216 7.13772 7.17019 7.56282 7.79972 7.91783 8.06047 8.45607 8.71943 9.18937 10.30228 10.51883 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.044923 B = 0.005304 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.145408 B = 5278.219387 C = 5805.974837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.066 3.934 3 C -0.152 4.152 4 N -0.361 5.361 5 C 0.053 3.947 6 C -0.157 4.157 7 C 0.199 3.801 8 N -0.688 5.688 9 C 0.536 3.464 10 O -0.563 6.563 11 C -0.532 4.532 12 H 0.071 0.929 13 C 0.086 3.914 14 N -0.738 5.738 15 Si 0.915 3.085 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.122 4.122 20 C 0.258 3.742 21 N -0.512 5.512 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.171 0.829 26 H 0.158 0.842 27 H 0.148 0.852 28 H 0.395 0.605 29 H 0.274 0.726 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 11.581 4.496 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.283 4.283 4 N -0.033 5.033 5 C -0.072 4.072 6 C -0.180 4.180 7 C 0.091 3.909 8 N -0.330 5.330 9 C 0.347 3.653 10 O -0.447 6.447 11 C -0.567 4.567 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.365 5.365 15 Si 0.739 3.261 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.148 4.148 20 C 0.019 3.981 21 N -0.234 5.234 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.189 0.811 26 H 0.175 0.825 27 H 0.165 0.835 28 H 0.229 0.771 29 H 0.085 0.915 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.300 10.291 3.893 11.813 hybrid contribution 1.566 0.709 0.157 1.726 sum -2.734 11.000 4.050 12.036 Atomic orbital electron populations 1.20070 0.87640 1.02558 1.02288 1.20947 0.96358 0.88366 1.01345 1.22465 0.80915 1.00148 1.24728 1.42793 1.05723 1.09060 1.45688 1.21294 0.82915 0.97949 1.05024 1.20757 0.97433 0.93559 1.06301 1.17794 0.88160 0.89617 0.95356 1.43875 1.09498 1.24140 1.55518 1.16589 0.90070 0.78838 0.79844 1.90793 1.40836 1.69200 1.43824 1.19587 1.01046 1.04320 1.31715 0.91052 1.25760 0.97332 0.97509 0.93198 1.70121 1.29309 1.17358 1.19744 0.86195 0.81421 0.79673 0.78854 1.18515 1.19810 1.19873 1.20734 0.86041 1.01594 1.06389 1.20803 0.94178 0.79552 1.03583 1.70608 0.98123 1.28972 1.25676 0.91185 0.91363 0.91003 0.81128 0.82454 0.83451 0.77117 0.91506 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.42 36.01 0.38 -0.47 16 2 C 0.07 1.14 7.08 -82.92 -0.59 0.56 16 3 C -0.15 -2.39 11.73 -15.83 -0.19 -2.57 16 4 N -0.36 -6.40 2.95 -62.22 -0.18 -6.58 16 5 C 0.05 0.76 10.94 -16.48 -0.18 0.58 16 6 C -0.16 -2.42 9.92 -39.74 -0.39 -2.81 16 7 C 0.20 4.04 6.31 -83.54 -0.53 3.52 16 8 N -0.69 -14.71 5.26 -12.71 -0.07 -14.77 16 9 C 0.54 14.49 7.23 -15.77 -0.11 14.37 16 10 O -0.56 -17.54 12.49 4.86 0.06 -17.48 16 11 C -0.53 -14.02 9.19 -38.50 -0.35 -14.38 16 12 H 0.07 1.68 7.84 -52.48 -0.41 1.27 16 13 C 0.09 2.26 5.49 -17.39 -0.10 2.16 16 14 N -0.74 -21.08 11.68 55.54 0.65 -20.43 16 15 Si 0.91 18.87 29.56 -169.99 -5.02 13.84 16 16 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 C -0.12 -2.81 8.77 -38.42 -0.34 -3.14 16 20 C 0.26 5.57 7.77 -155.63 -1.21 4.37 16 21 N -0.51 -11.11 11.30 -8.99 -0.10 -11.21 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 26 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.39 6.91 8.76 -40.82 -0.36 6.56 16 29 H 0.27 7.04 8.30 -40.82 -0.34 6.70 16 30 H 0.16 4.34 6.46 -52.49 -0.34 4.00 16 LS Contribution 269.38 15.07 4.06 4.06 Total: -1.00 -34.95 269.38 -7.00 -41.94 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.78 Total: 8.45 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.61 Total: 2.19 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.30 Total: -53.01 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.06 Total: -17.48 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.95 -7.00 -41.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641206962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.008 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds