Wall clock time and date at job start Sun Mar 29 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48501 * 109.46699 * 240.00121 * 3 2 1 5 5 H 1.48491 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46715 * 120.00668 * 3 2 1 7 7 C 1.37876 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99867 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.81396 * 103.00076 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47392 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47250 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.46842 * 180.02562 * 13 12 11 15 15 C 1.47093 * 125.55889 * 90.00569 * 14 13 12 16 16 C 1.54091 * 103.77776 * 180.02562 * 15 14 13 17 17 O 1.45704 * 104.12991 * 359.92869 * 16 15 14 18 18 C 1.34001 * 125.56070 * 270.01636 * 14 13 12 19 19 O 1.21513 * 123.07229 * 0.03827 * 18 14 13 20 20 H 0.97001 * 119.99902 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47212 * 60.00007 * 9 7 2 22 22 H 1.09006 * 109.46895 * 300.00073 * 9 7 2 23 23 H 1.09004 * 109.46855 * 59.99824 * 11 10 9 24 24 H 1.08999 * 109.47166 * 300.00353 * 11 10 9 25 25 H 1.09004 * 109.46910 * 60.00292 * 12 11 10 26 26 H 1.08996 * 109.47399 * 300.00040 * 12 11 10 27 27 H 1.09004 * 109.47022 * 60.00243 * 13 12 11 28 28 H 1.08996 * 109.46855 * 300.00254 * 13 12 11 29 29 H 1.09000 * 110.56724 * 61.43908 * 15 14 13 30 30 H 1.09004 * 110.68940 * 298.64853 * 15 14 13 31 31 H 1.09002 * 110.52360 * 118.62859 * 16 15 14 32 32 H 1.09002 * 110.51975 * 241.22721 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3516 -5.3367 0.0003 12 6 2.2084 -6.6042 -0.0003 13 6 1.2989 -7.8346 -0.0003 14 7 2.1194 -9.0483 -0.0002 15 6 2.5984 -9.7569 1.1965 16 6 3.4004 -10.9420 0.6248 17 8 3.2907 -10.7821 -0.8193 18 6 2.5562 -9.6937 -1.0903 19 8 2.3091 -9.3265 -2.2219 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 0.7221 -5.3236 -0.8895 24 1 0.7227 -5.3231 0.8904 25 1 2.8382 -6.6174 0.8893 26 1 2.8370 -6.6175 -0.8907 27 1 0.6695 -7.8212 -0.8901 28 1 0.6701 -7.8215 0.8899 29 1 1.7582 -10.1146 1.7916 30 1 3.2424 -9.1118 1.7942 31 1 4.4430 -10.8841 0.9375 32 1 2.9602 -11.8883 0.9390 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652879081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:29 Heat of formation + Delta-G solvation = -84.686112 kcal Electronic energy + Delta-G solvation = -14970.288398 eV Core-core repulsion = 12250.139937 eV Total energy + Delta-G solvation = -2720.148461 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68597 -37.36924 -36.39272 -33.29926 -33.13693 -29.98677 -28.53543 -26.76257 -23.97092 -23.28694 -22.07921 -20.85507 -17.64857 -17.42202 -17.03781 -16.45937 -15.54117 -15.24512 -14.65354 -14.59496 -14.36732 -14.26336 -13.90465 -12.97402 -12.85184 -12.56969 -12.47024 -11.97182 -11.89084 -11.76651 -10.97616 -10.90148 -10.81233 -10.69881 -10.64541 -9.98405 -9.60832 -9.09230 -8.86594 -8.60741 -6.69433 -6.19095 -4.23282 2.17170 2.54899 2.69580 3.23460 3.28663 3.31616 3.36192 3.81995 3.87710 4.29355 4.35966 4.38424 4.83980 4.89917 5.01852 5.14247 5.17987 5.18633 5.21622 5.46300 5.57970 5.85836 6.11021 6.14516 6.32983 7.09404 7.11606 7.12626 7.75388 7.85243 8.01750 8.78343 9.39716 10.92267 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.063606 B = 0.003476 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.107369 B = 8052.770462 C = 8073.461660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.093 3.907 10 S -0.310 6.310 11 C -0.087 4.087 12 C -0.118 4.118 13 C 0.149 3.851 14 N -0.628 5.628 15 C 0.064 3.936 16 C 0.041 3.959 17 O -0.331 6.331 18 C 0.640 3.360 19 O -0.518 6.518 20 H 0.266 0.734 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -20.487 5.794 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.054 4.054 10 S -0.083 6.083 11 C -0.236 4.236 12 C -0.157 4.157 13 C 0.028 3.972 14 N -0.376 5.376 15 C -0.060 4.060 16 C -0.035 4.035 17 O -0.242 6.242 18 C 0.394 3.606 19 O -0.402 6.402 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.871 -20.299 5.035 21.270 hybrid contribution -0.971 0.916 0.290 1.366 sum 2.901 -19.384 5.325 20.310 Atomic orbital electron populations 1.69946 1.06150 1.27445 1.49677 1.24969 0.94980 0.99289 0.94647 0.86401 0.79396 0.81825 0.78975 1.19872 1.21057 1.19914 1.20658 0.93453 0.88801 1.52314 0.91525 1.21031 0.93577 0.90790 1.00026 1.86641 1.21378 1.02242 1.98064 1.23071 1.00484 0.95814 1.04236 1.21705 0.98413 0.91762 1.03823 1.21446 0.91771 0.80023 1.03995 1.48099 1.55217 1.28728 1.05578 1.22822 0.99796 0.93880 0.89504 1.24271 1.02792 0.99516 0.76875 1.87373 1.67488 1.43740 1.25560 1.18593 0.77594 0.78815 0.85632 1.91070 1.60617 1.67751 1.20720 0.92447 0.94604 0.94666 0.90627 0.90785 0.90967 0.90586 0.89115 0.89473 0.88970 0.88791 0.87638 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -14.63 9.13 -34.44 -0.31 -14.95 16 8 H 0.07 1.90 7.71 -52.49 -0.40 1.49 16 9 C 0.09 2.43 5.70 36.01 0.21 2.63 16 10 S -0.31 -6.78 21.66 -107.50 -2.33 -9.11 16 11 C -0.09 -1.41 5.94 37.16 0.22 -1.19 16 12 C -0.12 -1.57 5.55 -26.73 -0.15 -1.71 16 13 C 0.15 1.59 6.01 -4.04 -0.02 1.57 16 14 N -0.63 -6.54 2.96 -178.75 -0.53 -7.07 16 15 C 0.06 0.36 7.70 -3.15 -0.02 0.34 16 16 C 0.04 0.21 8.22 37.73 0.31 0.53 16 17 O -0.33 -3.76 11.11 -38.59 -0.43 -4.19 16 18 C 0.64 8.79 8.85 53.71 0.48 9.26 16 19 O -0.52 -9.42 17.55 -19.10 -0.34 -9.75 16 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 23 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.09 1.06 7.93 -51.93 -0.41 0.65 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 293.48 15.07 4.42 4.42 Total: -1.00 -34.23 293.48 -7.48 -41.71 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -4.60 Total: -5.28 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 0.60 Total: -1.79 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.21 Total: -32.48 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.76 Total: -13.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -2.33 Total: -9.11 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.23 -7.48 -41.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.976 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds