Wall clock time and date at job start Sun Mar 29 2020 22:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53931 * 110.05964 * 2 1 4 4 N 1.47289 * 106.17208 * 259.78345 * 3 2 1 5 5 C 1.36934 * 126.69032 * 149.12815 * 4 3 2 6 6 H 1.07993 * 120.00584 * 359.97438 * 5 4 3 7 7 C 1.38814 * 119.99503 * 180.02562 * 5 4 3 8 8 N 1.31622 * 120.00546 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47213 * 89.99877 * 9 7 5 11 11 H 1.48502 * 109.47455 * 210.00366 * 9 7 5 12 12 H 1.48504 * 109.47024 * 330.00374 * 9 7 5 13 13 C 1.47290 * 106.61028 * 329.11093 * 4 3 2 14 14 C 1.53341 * 110.07847 * 243.98439 * 2 1 3 15 15 H 1.09000 * 110.08307 * 0.02562 * 14 2 1 16 16 C 1.54091 * 112.11137 * 237.48283 * 14 2 1 17 17 S 1.83784 * 102.98092 * 25.13403 * 16 14 2 18 18 O 1.42101 * 109.81055 * 77.49998 * 17 16 14 19 19 O 1.42096 * 109.81307 * 211.81151 * 17 16 14 20 20 C 1.54092 * 110.06665 * 120.28905 * 2 1 3 21 21 H 1.09001 * 109.47002 * 58.98449 * 1 2 3 22 22 H 1.08993 * 109.46955 * 178.98886 * 1 2 3 23 23 H 1.09000 * 109.47050 * 298.98715 * 1 2 3 24 24 H 1.08997 * 110.11531 * 18.96605 * 3 2 1 25 25 H 1.08998 * 110.11081 * 140.61106 * 3 2 1 26 26 H 0.96992 * 120.00264 * 180.02562 * 8 7 5 27 27 H 1.09000 * 110.11425 * 150.06943 * 13 4 3 28 28 H 1.09003 * 110.11052 * 271.65476 * 13 4 3 29 29 H 1.08994 * 110.70667 * 143.50620 * 16 14 2 30 30 H 1.08997 * 110.71031 * 266.76515 * 16 14 2 31 31 H 1.08993 * 110.71299 * 215.74904 * 20 2 1 32 32 H 1.09003 * 110.71052 * 339.00018 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0580 1.4459 0.0000 4 7 2.4344 1.7452 -1.3922 5 6 2.3894 2.9679 -2.0071 6 1 2.0503 3.8352 -1.4603 7 6 2.7787 3.0922 -3.3337 8 7 3.1906 2.0349 -4.0007 9 14 2.7166 4.7600 -4.1730 10 1 4.0144 5.4569 -3.9858 11 1 2.4588 4.5749 -5.6237 12 1 1.6272 5.5740 -3.5765 13 6 2.8691 0.4729 -1.9936 14 6 2.0565 -0.6317 -1.2943 15 1 1.2235 -0.9396 -1.9262 16 6 2.9764 -1.8369 -1.0191 17 16 2.4128 -2.4181 0.6309 18 8 1.2026 -3.1504 0.4960 19 8 3.5084 -2.9722 1.3463 20 6 2.0588 -0.7300 1.2498 21 1 -0.3633 0.5295 -0.8808 22 1 -0.3633 -1.0274 -0.0181 23 1 -0.3633 0.4980 0.8989 24 1 1.2774 2.1300 0.3326 25 1 2.9296 1.5266 0.6495 26 1 3.4629 2.1219 -4.9276 27 1 2.6588 0.4727 -3.0632 28 1 3.9347 0.3217 -1.8214 29 1 2.8311 -2.6122 -1.7712 30 1 4.0200 -1.5247 -0.9820 31 1 2.9682 -0.2551 1.6177 32 1 1.2970 -0.7618 2.0288 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656384539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:40 Heat of formation + Delta-G solvation = -42.542042 kcal Electronic energy + Delta-G solvation = -16801.969037 eV Core-core repulsion = 14083.648081 eV Total energy + Delta-G solvation = -2718.320957 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.05581 -36.83544 -35.81693 -33.96854 -31.52644 -30.93295 -27.62177 -26.28933 -25.52451 -22.94294 -20.57698 -18.81884 -18.70268 -17.02432 -16.14097 -15.78990 -15.63219 -14.95706 -14.58831 -13.99215 -13.59937 -13.41231 -12.91972 -12.30267 -12.21396 -11.93909 -11.90254 -11.82160 -11.55993 -11.30263 -11.18287 -10.92452 -10.85268 -10.57059 -10.16455 -10.05740 -9.93480 -9.82750 -9.47871 -8.81752 -7.01353 -5.76109 -3.21174 0.30182 2.64086 3.33243 3.38516 3.40325 3.78540 4.13111 4.39652 4.65318 4.86731 4.99094 5.01895 5.18117 5.36633 5.52837 5.57389 5.71737 5.77500 5.98317 6.07016 6.17179 6.31120 6.43053 6.47000 6.61057 6.70605 7.29004 7.49446 7.70202 8.26121 9.08396 9.69087 10.35058 11.25444 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048331 B = 0.006899 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.198137 B = 4057.838154 C = 4264.202786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.222 4.222 6 H 0.080 0.920 7 C -0.011 4.011 8 N -0.921 5.921 9 Si 0.918 3.082 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.145 3.855 14 C -0.103 4.103 15 H 0.091 0.909 16 C -0.556 4.556 17 S 2.364 3.636 18 O -0.940 6.940 19 O -0.954 6.954 20 C -0.565 4.565 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.254 0.746 27 H 0.127 0.873 28 H 0.016 0.984 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 -5.733 7.094 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C 0.019 3.981 4 N -0.320 5.320 5 C -0.350 4.350 6 H 0.098 0.902 7 C -0.206 4.206 8 N -0.570 5.570 9 Si 0.748 3.252 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.019 3.981 14 C -0.124 4.124 15 H 0.110 0.890 16 C -0.687 4.687 17 S 2.551 3.449 18 O -0.937 6.937 19 O -0.950 6.950 20 C -0.696 4.696 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.034 0.966 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.652 -6.566 7.315 10.181 hybrid contribution 0.161 1.591 -0.707 1.749 sum -2.491 -4.975 6.608 8.639 Atomic orbital electron populations 1.22003 0.92904 1.02214 1.02750 1.21505 0.96820 0.98893 0.89824 1.21576 0.96709 0.91142 0.88693 1.44566 1.75832 1.05185 1.06393 1.19109 1.37337 0.84706 0.93859 0.90171 1.24805 1.01263 0.97869 0.96710 1.69578 1.50241 1.27005 1.10145 0.86020 0.77768 0.82626 0.78761 1.21549 1.21571 1.20629 1.22139 0.93197 0.80981 1.01814 1.22417 0.98313 0.94889 0.96826 0.89050 1.30391 1.09870 1.08204 1.20263 1.09844 0.75857 0.78931 0.80287 1.93589 1.45216 1.68969 1.85963 1.93565 1.53644 1.76999 1.70839 1.30438 1.10946 1.21528 1.06654 0.91053 0.92039 0.92449 0.93320 0.95841 0.93464 0.85568 0.96643 0.85121 0.84549 0.84483 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.93 37.16 0.29 -1.76 16 2 C -0.07 -1.06 0.87 -153.27 -0.13 -1.20 16 3 C 0.15 2.78 6.35 -3.13 -0.02 2.76 16 4 N -0.60 -14.20 3.39 -170.82 -0.58 -14.78 16 5 C -0.22 -5.85 10.34 -15.06 -0.16 -6.00 16 6 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 7 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 8 N -0.92 -25.50 10.08 55.49 0.56 -24.94 16 9 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.14 3.22 5.74 -3.12 -0.02 3.20 16 14 C -0.10 -1.75 3.08 -89.39 -0.28 -2.03 16 15 H 0.09 1.53 7.67 -51.93 -0.40 1.13 16 16 C -0.56 -7.71 6.88 37.73 0.26 -7.45 16 17 S 2.36 32.33 6.06 -107.50 -0.65 31.68 16 18 O -0.94 -15.16 18.03 -57.67 -1.04 -16.20 16 19 O -0.95 -15.63 18.16 -57.67 -1.05 -16.68 16 20 C -0.57 -7.13 6.39 37.73 0.24 -6.89 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.06 0.83 8.00 -51.93 -0.42 0.42 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.90 7.78 -51.93 -0.40 0.49 16 25 H 0.02 0.44 7.24 -51.93 -0.38 0.06 16 26 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.13 3.20 5.47 -51.93 -0.28 2.92 16 28 H 0.02 0.36 7.25 -51.93 -0.38 -0.02 16 29 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.14 1.83 7.29 -51.93 -0.38 1.45 16 31 H 0.14 1.58 7.28 -51.93 -0.38 1.21 16 32 H 0.13 1.34 7.83 -51.93 -0.41 0.94 16 LS Contribution 266.06 15.07 4.01 4.01 Total: -1.00 -32.27 266.06 -7.91 -40.18 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.23 Total: 0.32 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 0.10 Total: -19.76 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.02 Total: -39.72 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -2.09 Total: -32.88 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 32.33 SS G_CDS: -0.65 Total: 31.68 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.27 -7.91 -40.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656384539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.363 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds