Wall clock time and date at job start Sun Mar 29 2020 23:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46950 * 102.66563 * 3 2 1 5 5 C 1.34778 * 119.99890 * 180.02562 * 4 3 2 6 6 O 1.21577 * 119.99788 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99603 * 179.97438 * 5 4 3 8 8 C 1.39245 * 119.99695 * 185.79600 * 7 5 4 9 9 C 1.39685 * 119.57792 * 18.80802 * 8 7 5 10 10 C 1.38645 * 119.50153 * 180.02562 * 9 8 7 11 11 C 1.38353 * 118.66430 * 359.72917 * 10 9 8 12 12 C 1.40577 * 119.13593 * 0.53016 * 11 10 9 13 13 C 1.41326 * 119.78951 * 179.73337 * 12 11 10 14 14 H 1.08009 * 120.00124 * 6.98490 * 13 12 11 15 15 C 1.40022 * 119.99993 * 186.97674 * 13 12 11 16 16 N 1.30744 * 120.00173 * 181.93186 * 15 13 12 17 17 Si 1.86799 * 120.00027 * 1.93860 * 15 13 12 18 18 H 1.48499 * 109.47032 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47035 * 299.99771 * 17 15 13 20 20 H 1.48508 * 109.47222 * 59.99721 * 17 15 13 21 21 N 1.31907 * 119.57897 * 198.82418 * 8 7 5 22 22 H 4.40639 * 5.51340 * 179.97438 * 4 1 2 23 23 H 1.09000 * 109.47444 * 342.66266 * 3 2 1 24 24 H 1.09007 * 109.47295 * 222.65906 * 3 2 1 25 25 H 0.97001 * 119.99693 * 359.97438 * 4 3 2 26 26 H 0.97001 * 120.00655 * 5.79751 * 7 5 4 27 27 H 1.08010 * 120.24810 * 359.97438 * 9 8 7 28 28 H 1.07999 * 120.66905 * 179.97438 * 10 9 8 29 29 H 1.08005 * 120.43023 * 180.26769 * 11 10 9 30 30 H 0.97002 * 119.99871 * 354.84264 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3037 -1.3477 5 6 4.4592 0.3578 -1.5881 6 8 5.2494 0.1556 -0.6865 7 7 4.9083 0.6361 -2.8280 8 6 6.2714 0.5736 -3.1051 9 6 7.1167 -0.1386 -2.2510 10 6 8.4738 -0.1994 -2.5281 11 6 8.9509 0.4479 -3.6539 12 6 8.0503 1.1529 -4.4713 13 6 8.5236 1.8238 -5.6216 14 1 9.5504 1.7022 -5.9336 15 6 7.6612 2.6462 -6.3570 16 7 8.0884 3.2369 -7.4423 17 14 5.9003 2.8994 -5.7872 18 1 5.2002 3.8069 -6.7314 19 1 5.2001 1.5906 -5.7467 20 1 5.9010 3.5026 -4.4302 21 7 6.7481 1.1880 -4.1705 22 1 -1.0500 -0.0002 0.0001 23 1 3.0098 -0.9801 0.3062 24 1 3.0091 0.7566 0.6964 25 1 2.5037 0.4647 -2.0671 26 1 4.2819 0.8800 -3.5274 27 1 6.7161 -0.6376 -1.3808 28 1 9.1445 -0.7443 -1.8803 29 1 10.0022 0.4156 -3.8993 30 1 9.0216 3.1664 -7.6975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674522906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:33 Heat of formation + Delta-G solvation = 59.149694 kcal Electronic energy + Delta-G solvation = -16613.069127 eV Core-core repulsion = 13796.006655 eV Total energy + Delta-G solvation = -2817.062472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36433 -38.39024 -35.72775 -34.51756 -33.53503 -32.65868 -31.09959 -29.54100 -27.04966 -25.28069 -22.38190 -21.74556 -20.43330 -19.12547 -18.41410 -17.81853 -16.91214 -15.82539 -15.35219 -15.00413 -14.84684 -14.25916 -14.03236 -13.54748 -13.41991 -13.02950 -12.67497 -12.21466 -11.85571 -11.27474 -10.98807 -10.87829 -10.69043 -10.36871 -10.01808 -9.68214 -9.45593 -9.16640 -9.11505 -8.53831 -7.79767 -7.35951 -7.23651 -4.76566 2.03896 2.39502 2.49044 2.66303 3.05162 3.38547 3.53824 3.66186 3.96026 3.98415 4.32645 4.38725 4.66369 5.32466 5.35941 5.54391 5.56486 5.83321 6.08411 6.21183 6.41217 6.54644 6.65240 6.87054 7.16160 7.21131 7.32393 7.45747 7.62404 7.75793 7.89214 8.18389 8.33135 8.62924 8.70782 9.41450 10.01162 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.006337 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.873741 B = 4417.409612 C = 5321.496081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.204 4.204 3 C 0.250 3.750 4 N -0.745 5.745 5 C 0.712 3.288 6 O -0.562 6.562 7 N -0.666 5.666 8 C 0.404 3.596 9 C -0.310 4.310 10 C -0.034 4.034 11 C -0.279 4.279 12 C 0.275 3.725 13 C -0.477 4.477 14 H 0.084 0.916 15 C 0.043 3.957 16 N -0.808 5.808 17 Si 1.158 2.842 18 H -0.333 1.333 19 H -0.285 1.285 20 H -0.294 1.294 21 N -0.601 5.601 22 H 0.221 0.779 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.400 0.600 26 H 0.405 0.595 27 H 0.142 0.858 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 -4.914 9.603 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.205 4.205 3 C 0.127 3.873 4 N -0.403 5.403 5 C 0.412 3.588 6 O -0.438 6.438 7 N -0.313 5.313 8 C 0.173 3.827 9 C -0.335 4.335 10 C -0.058 4.058 11 C -0.301 4.301 12 C 0.151 3.849 13 C -0.510 4.510 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.430 5.430 17 Si 0.994 3.006 18 H -0.267 1.267 19 H -0.214 1.214 20 H -0.222 1.222 21 N -0.327 5.327 22 H 0.238 0.762 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.234 0.766 26 H 0.240 0.760 27 H 0.159 0.841 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.256 -3.952 9.443 16.749 hybrid contribution 1.445 -0.965 0.140 1.743 sum -11.812 -4.917 9.583 15.985 Atomic orbital electron populations 1.25006 0.95922 1.00940 0.97439 1.22977 0.94292 1.00690 1.02531 1.17898 0.82620 1.02829 0.83972 1.45061 1.05477 1.77751 1.11971 1.15615 0.82100 0.78315 0.82779 1.90866 1.53559 1.55639 1.43724 1.42311 1.07365 1.70660 1.10968 1.17784 0.81715 0.91820 0.91420 1.21543 0.93653 1.12294 1.06011 1.20929 0.94565 0.95299 0.94996 1.21594 0.99388 1.09582 0.99582 1.18249 0.85144 0.89507 0.91975 1.20720 0.99622 1.23298 1.07327 0.89834 1.27760 1.08812 0.90094 0.91094 1.70644 1.19177 1.34172 1.19007 0.81773 0.71096 0.74897 0.72812 1.26706 1.21357 1.22221 1.65863 1.16235 1.29364 1.21191 0.76182 0.88928 0.88949 0.76593 0.76033 0.84081 0.87572 0.87673 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 19.25 29.55 0.57 -0.78 16 2 C -0.20 -1.92 13.46 -37.12 -0.50 -2.42 16 3 C 0.25 2.63 6.15 -6.82 -0.04 2.58 16 4 N -0.75 -9.09 5.54 -68.11 -0.38 -9.47 16 5 C 0.71 12.09 8.40 -86.92 -0.73 11.36 16 6 O -0.56 -11.22 13.14 5.30 0.07 -11.15 16 7 N -0.67 -12.48 5.42 -15.79 -0.09 -12.57 16 8 C 0.40 9.37 7.51 -154.99 -1.16 8.21 16 9 C -0.31 -7.06 8.83 -38.89 -0.34 -7.40 16 10 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 11 C -0.28 -6.71 9.83 -38.66 -0.38 -7.09 16 12 C 0.28 7.30 6.39 -85.00 -0.54 6.75 16 13 C -0.48 -13.12 9.58 -37.74 -0.36 -13.48 16 14 H 0.08 2.28 8.05 -52.48 -0.42 1.86 16 15 C 0.04 1.18 5.52 -17.35 -0.10 1.09 16 16 N -0.81 -22.12 13.65 55.55 0.76 -21.37 16 17 Si 1.16 28.19 25.53 -169.99 -4.34 23.85 16 18 H -0.33 -8.01 7.11 56.52 0.40 -7.60 16 19 H -0.29 -6.64 6.69 56.52 0.38 -6.26 16 20 H -0.29 -7.29 7.10 56.52 0.40 -6.89 16 21 N -0.60 -15.34 4.58 -10.26 -0.05 -15.39 16 22 H 0.22 0.89 7.80 -54.09 -0.42 0.47 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 26 H 0.40 6.60 8.84 -40.82 -0.36 6.24 16 27 H 0.14 3.14 5.33 -52.50 -0.28 2.86 16 28 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.11 2.35 8.06 -52.48 -0.42 1.93 16 30 H 0.28 7.41 8.72 -40.82 -0.36 7.05 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -31.82 273.46 -6.59 -38.41 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -2.70 Total: 5.89 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.99 Total: -2.32 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.25 Total: -58.79 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 14 Polarization: 28.19 SS G_CDS: -4.34 Total: 23.85 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.82 -6.59 -38.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674522906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.561 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds