Wall clock time and date at job start Sun Mar 29 2020 23:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46950 * 102.66563 * 3 2 1 5 5 C 1.34778 * 119.99890 * 180.02562 * 4 3 2 6 6 O 1.21577 * 119.99788 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99603 * 179.97438 * 5 4 3 8 8 C 1.39245 * 119.99695 * 185.79600 * 7 5 4 9 9 C 1.39685 * 119.57792 * 18.80802 * 8 7 5 10 10 C 1.38645 * 119.50153 * 180.02562 * 9 8 7 11 11 C 1.38353 * 118.66430 * 359.72917 * 10 9 8 12 12 C 1.40577 * 119.13593 * 0.53016 * 11 10 9 13 13 C 1.41326 * 119.78951 * 179.73337 * 12 11 10 14 14 H 1.08009 * 120.00124 * 6.98490 * 13 12 11 15 15 C 1.40022 * 119.99993 * 186.97674 * 13 12 11 16 16 N 1.30744 * 120.00173 * 181.93186 * 15 13 12 17 17 Si 1.86799 * 120.00027 * 1.93860 * 15 13 12 18 18 H 1.48499 * 109.47032 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47035 * 299.99771 * 17 15 13 20 20 H 1.48508 * 109.47222 * 59.99721 * 17 15 13 21 21 N 1.31907 * 119.57897 * 198.82418 * 8 7 5 22 22 H 4.40639 * 5.51340 * 179.97438 * 4 1 2 23 23 H 1.09000 * 109.47444 * 342.66266 * 3 2 1 24 24 H 1.09007 * 109.47295 * 222.65906 * 3 2 1 25 25 H 0.97001 * 119.99693 * 359.97438 * 4 3 2 26 26 H 0.97001 * 120.00655 * 5.79751 * 7 5 4 27 27 H 1.08010 * 120.24810 * 359.97438 * 9 8 7 28 28 H 1.07999 * 120.66905 * 179.97438 * 10 9 8 29 29 H 1.08005 * 120.43023 * 180.26769 * 11 10 9 30 30 H 0.97002 * 119.99871 * 354.84264 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3037 -1.3477 5 6 4.4592 0.3578 -1.5881 6 8 5.2494 0.1556 -0.6865 7 7 4.9083 0.6361 -2.8280 8 6 6.2714 0.5736 -3.1051 9 6 7.1167 -0.1386 -2.2510 10 6 8.4738 -0.1994 -2.5281 11 6 8.9509 0.4479 -3.6539 12 6 8.0503 1.1529 -4.4713 13 6 8.5236 1.8238 -5.6216 14 1 9.5504 1.7022 -5.9336 15 6 7.6612 2.6462 -6.3570 16 7 8.0884 3.2369 -7.4423 17 14 5.9003 2.8994 -5.7872 18 1 5.2002 3.8069 -6.7314 19 1 5.2001 1.5906 -5.7467 20 1 5.9010 3.5026 -4.4302 21 7 6.7481 1.1880 -4.1705 22 1 -1.0500 -0.0002 0.0001 23 1 3.0098 -0.9801 0.3062 24 1 3.0091 0.7566 0.6964 25 1 2.5037 0.4647 -2.0671 26 1 4.2819 0.8800 -3.5274 27 1 6.7161 -0.6376 -1.3808 28 1 9.1445 -0.7443 -1.8803 29 1 10.0022 0.4156 -3.8993 30 1 9.0216 3.1664 -7.6975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674522906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:33 Heat of formation + Delta-G solvation = 37.666453 kcal Electronic energy + Delta-G solvation = -16614.000710 eV Core-core repulsion = 13796.006655 eV Total energy + Delta-G solvation = -2817.994056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.84420 -40.11261 -36.86561 -36.11788 -35.37845 -33.55206 -32.97811 -31.27085 -28.11352 -27.15310 -24.00256 -23.54182 -21.90857 -20.60908 -19.86315 -19.23639 -18.20095 -17.21606 -16.86952 -16.61819 -16.26258 -15.82676 -15.45816 -15.11736 -14.78467 -14.43684 -14.26533 -14.20808 -13.70024 -12.98880 -12.71030 -12.24445 -11.79484 -11.74012 -11.60848 -11.47101 -11.15534 -10.96427 -10.40646 -10.21649 -9.74133 -9.26162 -9.16143 -6.80927 0.58940 0.75949 1.07417 1.56312 1.69231 1.83701 1.95920 2.01477 2.09191 2.44797 2.69793 3.12185 3.36090 3.57614 4.07706 4.38635 4.51449 4.54115 4.66348 4.71391 4.80569 5.00824 5.23496 5.35870 5.37732 5.44484 5.66049 5.78174 5.91573 6.04124 6.41906 6.59058 6.61079 6.79561 7.31676 7.51440 7.96180 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.006337 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.873741 B = 4417.409612 C = 5321.496081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.248 4.248 3 C 0.251 3.749 4 N -0.724 5.724 5 C 0.713 3.287 6 O -0.592 6.592 7 N -0.664 5.664 8 C 0.394 3.606 9 C -0.306 4.306 10 C -0.026 4.026 11 C -0.294 4.294 12 C 0.260 3.740 13 C -0.509 4.509 14 H 0.069 0.931 15 C 0.015 3.985 16 N -0.831 5.831 17 Si 1.189 2.811 18 H -0.330 1.330 19 H -0.271 1.271 20 H -0.302 1.302 21 N -0.613 5.613 22 H 0.255 0.745 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.414 0.586 26 H 0.416 0.584 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 -5.901 11.316 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.249 4.249 3 C 0.128 3.872 4 N -0.380 5.380 5 C 0.413 3.587 6 O -0.471 6.471 7 N -0.312 5.312 8 C 0.162 3.838 9 C -0.330 4.330 10 C -0.050 4.050 11 C -0.316 4.316 12 C 0.135 3.865 13 C -0.542 4.542 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.455 5.455 17 Si 1.023 2.977 18 H -0.263 1.263 19 H -0.198 1.198 20 H -0.231 1.231 21 N -0.340 5.340 22 H 0.271 0.729 23 H 0.112 0.888 24 H 0.108 0.892 25 H 0.250 0.750 26 H 0.253 0.747 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.133 0.867 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.629 -4.954 11.159 19.833 hybrid contribution 2.052 -0.778 -0.172 2.201 sum -13.577 -5.732 10.987 18.383 Atomic orbital electron populations 1.25864 0.96653 0.98595 0.94868 1.22886 0.94316 1.02847 1.04809 1.17902 0.83825 1.02830 0.82606 1.44952 1.03842 1.75915 1.13330 1.15699 0.83310 0.77988 0.81721 1.90828 1.54861 1.57031 1.44346 1.42255 1.05967 1.70860 1.12116 1.18101 0.83684 0.91234 0.90787 1.21894 0.94066 1.11237 1.05798 1.21343 0.94989 0.94230 0.94415 1.21764 0.99760 1.09940 1.00145 1.18427 0.86178 0.89818 0.92125 1.20721 0.99340 1.25240 1.08936 0.91283 1.28541 1.10836 0.89798 0.90984 1.70665 1.19216 1.35692 1.19910 0.81379 0.69117 0.75317 0.71928 1.26331 1.19844 1.23108 1.65848 1.15995 1.29896 1.22241 0.72850 0.88832 0.89168 0.74966 0.74714 0.83090 0.83727 0.86683 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 19.25 74.32 1.43 -0.23 16 2 C -0.25 -4.01 13.46 31.13 0.42 -3.60 16 3 C 0.25 4.79 6.15 84.57 0.52 5.31 16 4 N -0.72 -16.00 5.54 -487.67 -2.70 -18.70 16 5 C 0.71 22.75 8.40 179.06 1.50 24.26 16 6 O -0.59 -22.56 13.14 -3.96 -0.05 -22.61 16 7 N -0.66 -23.57 5.42 -322.13 -1.75 -25.32 16 8 C 0.39 17.64 7.51 133.26 1.00 18.64 16 9 C -0.31 -13.23 8.83 22.72 0.20 -13.03 16 10 C -0.03 -1.07 10.15 22.39 0.23 -0.84 16 11 C -0.29 -13.87 9.83 22.87 0.22 -13.65 16 12 C 0.26 13.77 6.39 40.19 0.26 14.03 16 13 C -0.51 -28.69 9.58 23.46 0.22 -28.46 16 14 H 0.07 3.94 8.05 -2.91 -0.02 3.92 16 15 C 0.01 0.82 5.52 85.29 0.47 1.29 16 16 N -0.83 -46.62 13.65 21.84 0.30 -46.32 16 17 Si 1.19 57.09 25.53 68.60 1.75 58.84 16 18 H -0.33 -15.43 7.11 99.48 0.71 -14.73 16 19 H -0.27 -12.19 6.69 99.48 0.67 -11.52 16 20 H -0.30 -14.78 7.10 99.48 0.71 -14.07 16 21 N -0.61 -30.83 4.58 -186.37 -0.85 -31.68 16 22 H 0.26 0.83 7.80 -4.42 -0.03 0.79 16 23 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.41 7.01 8.47 -92.71 -0.79 6.22 16 26 H 0.42 12.66 8.84 -92.71 -0.82 11.84 16 27 H 0.15 6.34 5.33 -3.16 -0.02 6.33 16 28 H 0.15 4.88 8.06 -2.91 -0.02 4.85 16 29 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.28 15.24 8.72 -92.71 -0.81 14.43 16 Total: -1.00 -68.13 273.46 2.68 -65.45 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -0.49 Total: 16.63 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.48 Total: 3.71 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.00 Total: -122.02 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 57.09 SS G_CDS: 1.75 Total: 58.84 kcal Total: -68.13 2.68 -65.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674522906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.116 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds