Wall clock time and date at job start Sun Mar 29 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99573 * 2 1 4 4 H 1.48502 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47404 * 299.99734 * 3 2 1 6 6 H 1.48509 * 109.47362 * 59.99896 * 3 2 1 7 7 C 1.37875 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.53122 * 109.52501 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27606 * 177.62284 * 10 9 7 12 12 N 1.46846 * 109.52468 * 300.81546 * 11 10 9 13 13 C 1.46893 * 111.00130 * 185.84508 * 12 11 10 14 14 C 1.50696 * 109.47236 * 170.00273 * 13 12 11 15 15 C 1.38230 * 120.00309 * 89.99753 * 14 13 12 16 16 C 1.38235 * 120.00326 * 179.97438 * 15 14 13 17 17 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38240 * 120.00061 * 0.07178 * 17 16 15 19 19 C 1.38234 * 120.00081 * 359.88514 * 18 17 16 20 20 C 1.46851 * 111.19730 * 61.74282 * 12 11 10 21 21 C 1.53035 * 109.52408 * 298.25970 * 20 12 11 22 22 H 0.97000 * 120.00669 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.52503 * 59.86887 * 9 7 2 24 24 H 1.08999 * 109.50576 * 57.67903 * 10 9 7 25 25 H 1.09000 * 109.52862 * 297.58079 * 10 9 7 26 26 H 1.09002 * 109.45742 * 180.79868 * 11 10 9 27 27 H 1.08994 * 109.45565 * 60.83012 * 11 10 9 28 28 H 1.09003 * 109.47526 * 49.99792 * 13 12 11 29 29 H 1.09001 * 109.47224 * 289.99946 * 13 12 11 30 30 H 1.08000 * 120.00376 * 359.97438 * 15 14 13 31 31 H 1.08000 * 120.00616 * 179.72578 * 16 15 14 32 32 H 1.08001 * 120.00299 * 179.97438 * 17 16 15 33 33 H 1.08005 * 120.00107 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.00147 * 180.10835 * 19 18 17 35 35 H 1.09000 * 109.45665 * 58.27447 * 20 12 11 36 36 H 1.08992 * 109.46346 * 178.24120 * 20 12 11 37 37 H 1.08997 * 109.50221 * 299.23932 * 21 20 12 38 38 H 1.08998 * 109.50149 * 179.11704 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0018 11 6 1.4753 -4.9851 0.0617 12 7 0.6526 -5.0190 1.2776 13 6 0.0063 -6.3281 1.4396 14 6 -0.6238 -6.4117 2.8060 15 6 -1.9310 -6.0019 2.9906 16 6 -2.5091 -6.0791 4.2439 17 6 -1.7801 -6.5665 5.3125 18 6 -0.4725 -6.9754 5.1281 19 6 0.1053 -6.8991 3.8746 20 6 -0.3412 -3.9378 1.2767 21 6 0.3745 -2.5853 1.2530 22 1 -0.4851 0.8400 0.0004 23 1 0.6228 -2.5570 -0.8882 24 1 2.8987 -3.5836 0.8705 25 1 2.8443 -3.6326 -0.9083 26 1 2.1807 -5.8159 0.0771 27 1 0.8324 -5.0706 -0.8143 28 1 0.7513 -7.1168 1.3342 29 1 -0.7627 -6.4505 0.6769 30 1 -2.5007 -5.6215 2.1557 31 1 -3.5290 -5.7548 4.3891 32 1 -2.2316 -6.6264 6.2917 33 1 0.0972 -7.3558 5.9631 34 1 1.1263 -7.2201 3.7302 35 1 -0.9755 -4.0286 0.3950 36 1 -0.9552 -4.0082 2.1744 37 1 0.9985 -2.4882 2.1414 38 1 -0.3635 -1.7834 1.2365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006661503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:05 Heat of formation + Delta-G solvation = 15.404734 kcal Electronic energy + Delta-G solvation = -17595.066479 eV Core-core repulsion = 15015.480521 eV Total energy + Delta-G solvation = -2579.585958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40252 -37.77393 -34.15106 -32.06904 -30.81647 -30.20141 -29.70070 -26.48752 -24.35065 -22.63053 -21.87513 -21.66373 -20.56257 -18.53200 -16.62271 -16.35615 -15.28574 -15.13942 -15.06195 -14.41487 -13.97989 -13.57405 -13.30561 -12.85734 -12.71326 -12.66521 -12.19841 -12.13482 -11.61503 -11.34852 -11.02332 -10.92291 -10.81957 -10.64818 -10.35414 -10.17512 -9.93520 -9.39263 -8.94955 -8.80842 -8.63272 -8.58664 -8.25944 -7.70404 -5.94012 -3.99110 1.47539 1.53905 3.32501 3.40507 3.44743 3.86434 4.47991 4.64500 4.93970 4.99881 5.11529 5.22780 5.36298 5.45311 5.62463 5.72156 5.74752 5.80569 5.94739 6.11683 6.13347 6.19179 6.26287 6.35678 6.57324 6.61333 6.66709 6.67713 6.79394 6.89419 7.10646 7.13763 7.21020 7.48370 7.65799 7.72937 7.87318 8.09137 8.20206 8.52305 9.04853 9.65181 11.12266 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.031933 B = 0.005336 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.620767 B = 5245.637396 C = 5644.821936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.530 5.530 13 C 0.089 3.911 14 C -0.066 4.066 15 C -0.112 4.112 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.101 4.101 20 C 0.054 3.946 21 C -0.103 4.103 22 H 0.258 0.742 23 H 0.020 0.980 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 -13.587 6.415 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.039 4.039 14 C -0.067 4.067 15 C -0.130 4.130 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.073 4.073 21 C -0.141 4.141 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.971 -13.379 6.787 15.294 hybrid contribution -0.159 0.871 -0.638 1.092 sum -3.130 -12.508 6.149 14.285 Atomic orbital electron populations 1.69888 1.05875 1.26144 1.51286 1.24968 0.94826 0.98999 0.95249 0.86587 0.80201 0.84027 0.77477 1.19829 1.21155 1.21093 1.21254 0.92914 0.90683 1.49852 0.92714 1.18696 0.92717 0.91765 0.93982 1.21676 0.98697 0.93726 1.00277 1.22130 0.95671 0.99347 0.89555 1.62031 1.23584 1.01499 1.38331 1.21046 0.97100 0.93248 0.92470 1.19815 0.93629 0.97558 0.95683 1.21102 0.95073 0.99388 0.97455 1.21088 0.99866 1.00086 0.93016 1.21082 0.94840 1.00017 0.98601 1.21105 0.95361 1.00670 0.97096 1.21006 0.99379 0.99229 0.92300 1.22363 0.93231 0.92948 0.98770 1.21645 1.00147 0.93023 0.99295 0.93196 0.96207 0.92485 0.93177 0.92440 0.95819 0.90593 0.94641 0.86333 0.86357 0.86534 0.86402 0.86134 0.96166 0.92126 0.93921 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 11.37 55.43 0.63 -25.13 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.19 8.56 -34.44 -0.30 -14.48 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 11 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 12 N -0.53 -9.67 4.65 -236.12 -1.10 -10.76 16 13 C 0.09 1.33 5.12 -4.98 -0.03 1.31 16 14 C -0.07 -0.96 4.89 -104.63 -0.51 -1.47 16 15 C -0.11 -1.55 7.88 -39.59 -0.31 -1.86 16 16 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 17 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 18 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 19 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 20 C 0.05 1.09 5.16 -3.83 -0.02 1.07 16 21 C -0.10 -2.50 5.12 -26.65 -0.14 -2.63 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 29 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.12 1.59 7.95 -52.49 -0.42 1.17 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.17 5.75 -51.93 -0.30 0.88 16 37 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 LS Contribution 302.72 15.07 4.56 4.56 Total: -1.00 -29.15 302.72 -10.31 -39.46 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.05 Total: -0.40 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -3.33 Total: -24.26 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.47 Total: -35.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.15 -10.31 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006661503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.866 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds