Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99573 * 2 1 4 4 H 1.48502 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47404 * 299.99734 * 3 2 1 6 6 H 1.48509 * 109.47362 * 59.99896 * 3 2 1 7 7 C 1.37875 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.53122 * 109.52501 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27606 * 177.62284 * 10 9 7 12 12 N 1.46846 * 109.52468 * 300.81546 * 11 10 9 13 13 C 1.46893 * 111.00130 * 185.84508 * 12 11 10 14 14 C 1.50696 * 109.47236 * 170.00273 * 13 12 11 15 15 C 1.38230 * 120.00309 * 89.99753 * 14 13 12 16 16 C 1.38235 * 120.00326 * 179.97438 * 15 14 13 17 17 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38240 * 120.00061 * 0.07178 * 17 16 15 19 19 C 1.38234 * 120.00081 * 359.88514 * 18 17 16 20 20 C 1.46851 * 111.19730 * 61.74282 * 12 11 10 21 21 C 1.53035 * 109.52408 * 298.25970 * 20 12 11 22 22 H 0.97000 * 120.00669 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.52503 * 59.86887 * 9 7 2 24 24 H 1.08999 * 109.50576 * 57.67903 * 10 9 7 25 25 H 1.09000 * 109.52862 * 297.58079 * 10 9 7 26 26 H 1.09002 * 109.45742 * 180.79868 * 11 10 9 27 27 H 1.08994 * 109.45565 * 60.83012 * 11 10 9 28 28 H 1.09003 * 109.47526 * 49.99792 * 13 12 11 29 29 H 1.09001 * 109.47224 * 289.99946 * 13 12 11 30 30 H 1.08000 * 120.00376 * 359.97438 * 15 14 13 31 31 H 1.08000 * 120.00616 * 179.72578 * 16 15 14 32 32 H 1.08001 * 120.00299 * 179.97438 * 17 16 15 33 33 H 1.08005 * 120.00107 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.00147 * 180.10835 * 19 18 17 35 35 H 1.09000 * 109.45665 * 58.27447 * 20 12 11 36 36 H 1.08992 * 109.46346 * 178.24120 * 20 12 11 37 37 H 1.08997 * 109.50221 * 299.23932 * 21 20 12 38 38 H 1.08998 * 109.50149 * 179.11704 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0018 11 6 1.4753 -4.9851 0.0617 12 7 0.6526 -5.0190 1.2776 13 6 0.0063 -6.3281 1.4396 14 6 -0.6238 -6.4117 2.8060 15 6 -1.9310 -6.0019 2.9906 16 6 -2.5091 -6.0791 4.2439 17 6 -1.7801 -6.5665 5.3125 18 6 -0.4725 -6.9754 5.1281 19 6 0.1053 -6.8991 3.8746 20 6 -0.3412 -3.9378 1.2767 21 6 0.3745 -2.5853 1.2530 22 1 -0.4851 0.8400 0.0004 23 1 0.6228 -2.5570 -0.8882 24 1 2.8987 -3.5836 0.8705 25 1 2.8443 -3.6326 -0.9083 26 1 2.1807 -5.8159 0.0771 27 1 0.8324 -5.0706 -0.8143 28 1 0.7513 -7.1168 1.3342 29 1 -0.7627 -6.4505 0.6769 30 1 -2.5007 -5.6215 2.1557 31 1 -3.5290 -5.7548 4.3891 32 1 -2.2316 -6.6264 6.2917 33 1 0.0972 -7.3558 5.9631 34 1 1.1263 -7.2201 3.7302 35 1 -0.9755 -4.0286 0.3950 36 1 -0.9552 -4.0082 2.1744 37 1 0.9985 -2.4882 2.1414 38 1 -0.3635 -1.7834 1.2365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006661503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = -0.257653 kcal Electronic energy + Delta-G solvation = -17595.745651 eV Core-core repulsion = 15015.480521 eV Total energy + Delta-G solvation = -2580.265130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55687 -39.20574 -35.88729 -33.76221 -31.83740 -31.67922 -31.32363 -28.13549 -25.97320 -23.94631 -23.34103 -23.13383 -21.74102 -20.33929 -18.44973 -17.58223 -16.92784 -16.36411 -16.21210 -16.11519 -15.34490 -14.97449 -14.73208 -14.36089 -14.25420 -14.18183 -13.57970 -13.44280 -13.03170 -12.94761 -12.83247 -12.55468 -12.36455 -12.02756 -11.89163 -11.80164 -11.74101 -11.34203 -10.81463 -10.64729 -10.38652 -9.73023 -9.63829 -9.14889 -8.08171 -6.21634 0.48894 0.57436 1.39614 1.41393 1.52979 2.43719 2.81289 3.18631 3.31214 3.88437 4.00149 4.20993 4.24494 4.27784 4.33493 4.35194 4.50408 4.53683 4.66726 4.73142 4.78926 4.84269 4.90620 4.98040 5.09371 5.17255 5.22276 5.24137 5.33470 5.56620 5.61952 5.63110 5.67573 5.78291 5.99435 6.02794 6.18218 6.28414 6.34212 6.40719 6.90386 7.46272 8.96757 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.031933 B = 0.005336 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.620767 B = 5245.637396 C = 5644.821936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.099 4.099 11 C 0.065 3.935 12 N -0.536 5.536 13 C 0.092 3.908 14 C -0.086 4.086 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.112 4.112 20 C 0.070 3.930 21 C -0.093 4.093 22 H 0.260 0.740 23 H -0.012 1.012 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.022 0.978 28 H 0.098 0.902 29 H 0.038 0.962 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.012 0.988 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -14.767 7.511 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.261 5.261 13 C -0.035 4.035 14 C -0.087 4.087 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.130 4.130 20 C -0.058 4.058 21 C -0.131 4.131 22 H 0.069 0.931 23 H 0.006 0.994 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.040 0.960 28 H 0.116 0.884 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.410 -14.578 7.882 16.746 hybrid contribution -0.360 1.215 -0.939 1.577 sum -2.770 -13.363 6.942 15.312 Atomic orbital electron populations 1.70027 1.07206 1.26976 1.51700 1.25756 0.95676 1.02412 0.94860 0.85572 0.79134 0.79776 0.77573 1.19134 1.20576 1.20672 1.21626 0.93019 0.92260 1.50125 0.93045 1.18675 0.93199 0.92796 0.92887 1.21543 0.97938 0.93986 1.00257 1.22083 0.96010 0.98500 0.89604 1.61964 1.23301 1.02552 1.38253 1.21100 0.97654 0.91587 0.93116 1.19864 0.94078 0.98987 0.95766 1.21228 0.95301 1.00141 0.98185 1.21380 1.00899 0.99876 0.92724 1.21463 0.94813 0.98825 0.99556 1.21459 0.95727 0.99994 0.97381 1.21230 0.99918 0.99262 0.92613 1.22051 0.93139 0.91764 0.98824 1.21400 0.99085 0.94645 0.98016 0.93114 0.99395 0.93088 0.92606 0.88967 0.95955 0.88406 0.94405 0.86764 0.84622 0.83893 0.83921 0.85139 0.96967 0.91267 0.95510 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 11.37 21.45 0.24 -54.20 16 2 C 0.01 0.63 5.31 84.65 0.45 1.08 16 3 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.53 -30.32 8.56 25.60 0.22 -30.10 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.24 2.16 -11.46 -0.02 2.21 16 10 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 11 C 0.07 2.29 5.46 86.33 0.47 2.76 16 12 N -0.54 -18.95 4.65 -900.96 -4.19 -23.14 16 13 C 0.09 2.59 5.12 85.56 0.44 3.03 16 14 C -0.09 -2.38 4.89 -19.87 -0.10 -2.47 16 15 C -0.13 -3.49 7.88 22.27 0.18 -3.32 16 16 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 17 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 18 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 19 C -0.11 -2.75 9.70 22.27 0.22 -2.53 16 20 C 0.07 2.86 5.16 86.32 0.45 3.31 16 21 C -0.09 -4.66 5.12 30.65 0.16 -4.50 16 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 24 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 2.62 8.02 -2.39 -0.02 2.60 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 2.31 7.93 -2.39 -0.02 2.30 16 29 H 0.04 1.05 8.07 -2.39 -0.02 1.03 16 30 H 0.11 3.05 7.95 -2.91 -0.02 3.03 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 2.70 5.75 -2.39 -0.01 2.68 16 37 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 3.33 6.17 -2.39 -0.01 3.32 16 Total: -1.00 -63.39 302.72 2.38 -61.02 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.01 Total: 12.04 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 3.28 Total: -42.38 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -3.94 Total: -77.34 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.39 2.38 -61.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006661503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.761 kcal (2) G-P(sol) polarization free energy of solvation -63.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds