Wall clock time and date at job start Sun Mar 29 2020 22:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46854 * 2 1 4 4 H 1.09003 * 109.46936 * 178.43766 * 3 2 1 5 5 C 1.50693 * 109.46954 * 298.44147 * 3 2 1 6 6 H 1.08001 * 120.00323 * 120.00721 * 5 3 2 7 7 C 1.37883 * 120.00022 * 299.99584 * 5 3 2 8 8 N 1.31513 * 120.00071 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47510 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47091 * 120.00460 * 9 7 5 12 12 H 1.48508 * 109.47153 * 239.99986 * 9 7 5 13 13 N 1.46906 * 109.47055 * 58.44054 * 3 2 1 14 14 C 1.47158 * 110.99906 * 179.51945 * 13 3 2 15 15 C 1.52884 * 108.50629 * 165.32518 * 14 13 3 16 16 C 1.50717 * 109.96182 * 50.40646 * 15 14 13 17 17 C 1.38674 * 118.48992 * 163.30178 * 16 15 14 18 18 C 1.38032 * 120.34845 * 179.60748 * 17 16 15 19 19 C 1.38256 * 119.82516 * 359.97438 * 18 17 16 20 20 C 1.38013 * 119.87554 * 0.08237 * 19 18 17 21 21 C 1.37837 * 121.65520 * 343.03614 * 16 15 14 22 22 C 1.46634 * 110.99911 * 56.51914 * 13 3 2 23 23 H 1.09004 * 109.47062 * 175.49325 * 1 2 3 24 24 H 1.09003 * 109.47250 * 55.50213 * 1 2 3 25 25 H 1.08995 * 109.47338 * 295.49663 * 1 2 3 26 26 H 1.08998 * 109.46974 * 119.99779 * 2 1 3 27 27 H 1.08999 * 109.46869 * 240.00070 * 2 1 3 28 28 H 0.96993 * 120.00249 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.62756 * 285.03156 * 14 13 3 30 30 H 1.09003 * 109.62966 * 45.61461 * 14 13 3 31 31 H 1.09007 * 109.39159 * 290.25339 * 15 14 13 32 32 H 1.09006 * 109.30845 * 170.50404 * 15 14 13 33 33 H 1.08006 * 119.82689 * 359.55595 * 17 16 15 34 34 H 1.08000 * 120.08398 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.06160 * 180.02562 * 19 18 17 36 36 H 1.07995 * 119.81775 * 179.97438 * 20 19 18 37 37 H 1.08995 * 109.27421 * 296.21073 * 22 13 3 38 38 H 1.09003 * 109.26876 * 55.72154 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1297 1.4427 0.0280 5 6 1.5694 2.1416 -1.2493 6 1 0.9463 3.0206 -1.1742 7 6 1.9346 1.6593 -2.4883 8 7 2.6931 0.5889 -2.5799 9 14 1.3518 2.5263 -4.0369 10 1 0.5176 3.6971 -3.6646 11 1 2.5275 2.9855 -4.8193 12 1 0.5475 1.5859 -4.8579 13 7 1.5197 2.1458 1.1802 14 6 1.9999 3.5363 1.2197 15 6 1.1570 4.3122 2.2320 16 6 1.1006 3.5613 3.5376 17 6 0.6936 4.2421 4.6752 18 6 0.6202 3.5898 5.8894 19 6 0.9537 2.2506 5.9719 20 6 1.3600 1.5724 4.8406 21 6 1.4363 2.2270 3.6198 22 6 1.8894 1.4457 2.4144 23 1 -0.3633 -1.0245 -0.0808 24 1 -0.3634 0.5821 -0.8470 25 1 -0.3634 0.4423 0.9275 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.9496 0.2493 -3.4514 29 1 3.0463 3.5538 1.5244 30 1 1.8952 3.9880 0.2332 31 1 0.1466 4.4365 1.8421 32 1 1.6041 5.2925 2.3974 33 1 0.4335 5.2884 4.6109 34 1 0.3031 4.1242 6.7728 35 1 0.8972 1.7364 6.9200 36 1 1.6206 0.5264 4.9062 37 1 1.4188 0.4627 2.4252 38 1 2.9723 1.3266 2.4498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:45 Heat of formation + Delta-G solvation = 20.983265 kcal Electronic energy + Delta-G solvation = -18044.555022 eV Core-core repulsion = 15465.210967 eV Total energy + Delta-G solvation = -2579.344055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68324 -37.06730 -33.94050 -32.33335 -31.24956 -30.25947 -28.54276 -26.65268 -24.02462 -23.48938 -22.23895 -21.77442 -19.61458 -18.56999 -16.49025 -16.04006 -15.32015 -14.83103 -14.63105 -14.21119 -14.04365 -13.47768 -13.18175 -12.83985 -12.63504 -12.34677 -12.22205 -11.70464 -11.51154 -11.29611 -11.05521 -10.95079 -10.81663 -10.51196 -10.39467 -10.03592 -9.93718 -9.65452 -9.35705 -8.82393 -8.52513 -8.40858 -8.21816 -7.16927 -6.01135 -4.04547 1.62254 1.65415 3.29199 3.37733 3.41494 4.01515 4.40123 4.92931 5.08701 5.10462 5.22428 5.27225 5.32731 5.61237 5.71684 5.86352 5.91878 6.03340 6.10876 6.20381 6.30231 6.37679 6.48463 6.58121 6.59548 6.69796 6.70982 6.75397 6.84069 7.00351 7.12982 7.27367 7.31097 7.42464 7.65763 7.75580 7.83475 8.17055 8.34147 8.58707 9.00927 9.59400 11.05412 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.006348 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.990839 B = 4409.644354 C = 4866.760447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.495 4.495 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.057 3.943 15 C -0.078 4.078 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.064 4.064 22 C 0.087 3.913 23 H 0.015 0.985 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.013 0.987 27 H 0.093 0.907 28 H 0.259 0.741 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 3.846 12.282 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.534 4.534 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.246 5.246 14 C -0.071 4.071 15 C -0.115 4.115 16 C -0.063 4.063 17 C -0.144 4.144 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.139 4.139 21 C -0.065 4.065 22 C -0.041 4.041 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.774 3.731 12.082 12.945 hybrid contribution 0.605 0.292 -0.699 0.969 sum -2.170 4.023 11.383 12.266 Atomic orbital electron populations 1.21478 0.97228 0.97645 1.01537 1.21585 0.95220 0.98142 1.00160 1.19317 0.92575 0.90889 0.86278 0.98447 1.21074 1.30882 1.11894 0.89516 0.91845 1.24901 0.95197 0.95088 0.98936 1.69883 1.36561 1.22656 1.24053 0.86519 0.78433 0.79672 0.83269 1.19738 1.21225 1.21072 1.62422 1.59336 1.01288 1.01596 1.22041 0.94717 0.90759 0.99613 1.20625 1.01711 0.97176 0.91998 1.19735 0.97710 0.93563 0.95279 1.21084 1.01063 0.99664 0.92548 1.20966 1.01602 0.94938 0.97401 1.20950 1.01023 0.94785 0.98051 1.21056 1.00746 0.99785 0.92352 1.19876 0.98093 0.93642 0.94875 1.20999 0.97411 0.97373 0.88319 0.96548 0.92139 0.94124 0.96864 0.88886 0.93062 0.96104 0.88831 0.90129 0.91468 0.86579 0.86719 0.86643 0.86423 0.89670 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.47 37.16 0.35 -2.33 16 2 C -0.11 -2.67 4.98 -26.73 -0.13 -2.80 16 3 C 0.22 5.27 1.74 -68.86 -0.12 5.15 16 4 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 5 C -0.50 -13.00 6.47 -34.44 -0.22 -13.22 16 6 H 0.06 1.68 6.84 -52.49 -0.36 1.32 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -24.86 11.31 55.43 0.63 -24.23 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.52 -11.06 3.79 -229.60 -0.87 -11.93 16 14 C 0.06 1.11 5.39 -3.74 -0.02 1.09 16 15 C -0.08 -1.26 5.94 -27.93 -0.17 -1.43 16 16 C -0.06 -1.02 5.77 -104.60 -0.60 -1.62 16 17 C -0.13 -1.75 9.66 -39.50 -0.38 -2.13 16 18 C -0.13 -1.67 10.05 -39.65 -0.40 -2.07 16 19 C -0.13 -1.69 10.05 -39.66 -0.40 -2.09 16 20 C -0.12 -1.78 9.65 -39.48 -0.38 -2.16 16 21 C -0.06 -1.10 5.79 -104.63 -0.61 -1.70 16 22 C 0.09 1.65 4.56 -5.16 -0.02 1.62 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 1.44 7.12 -51.93 -0.37 1.07 16 25 H 0.04 0.86 7.37 -51.93 -0.38 0.48 16 26 H 0.01 0.28 6.53 -51.93 -0.34 -0.06 16 27 H 0.09 2.46 6.03 -51.93 -0.31 2.14 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 30 H 0.09 1.94 6.19 -51.93 -0.32 1.62 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.09 1.60 6.17 -51.93 -0.32 1.28 16 38 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -27.67 296.32 -9.76 -37.42 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.76 Total: 0.55 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.20 Total: -22.17 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.24 Total: -36.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.67 -9.76 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.408 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds