Wall clock time and date at job start Sun Mar 29 2020 22:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46854 * 2 1 4 4 H 1.09003 * 109.46936 * 178.43766 * 3 2 1 5 5 C 1.50693 * 109.46954 * 298.44147 * 3 2 1 6 6 H 1.08001 * 120.00323 * 120.00721 * 5 3 2 7 7 C 1.37883 * 120.00022 * 299.99584 * 5 3 2 8 8 N 1.31513 * 120.00071 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47510 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47091 * 120.00460 * 9 7 5 12 12 H 1.48508 * 109.47153 * 239.99986 * 9 7 5 13 13 N 1.46906 * 109.47055 * 58.44054 * 3 2 1 14 14 C 1.47158 * 110.99906 * 179.51945 * 13 3 2 15 15 C 1.52884 * 108.50629 * 165.32518 * 14 13 3 16 16 C 1.50717 * 109.96182 * 50.40646 * 15 14 13 17 17 C 1.38674 * 118.48992 * 163.30178 * 16 15 14 18 18 C 1.38032 * 120.34845 * 179.60748 * 17 16 15 19 19 C 1.38256 * 119.82516 * 359.97438 * 18 17 16 20 20 C 1.38013 * 119.87554 * 0.08237 * 19 18 17 21 21 C 1.37837 * 121.65520 * 343.03614 * 16 15 14 22 22 C 1.46634 * 110.99911 * 56.51914 * 13 3 2 23 23 H 1.09004 * 109.47062 * 175.49325 * 1 2 3 24 24 H 1.09003 * 109.47250 * 55.50213 * 1 2 3 25 25 H 1.08995 * 109.47338 * 295.49663 * 1 2 3 26 26 H 1.08998 * 109.46974 * 119.99779 * 2 1 3 27 27 H 1.08999 * 109.46869 * 240.00070 * 2 1 3 28 28 H 0.96993 * 120.00249 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.62756 * 285.03156 * 14 13 3 30 30 H 1.09003 * 109.62966 * 45.61461 * 14 13 3 31 31 H 1.09007 * 109.39159 * 290.25339 * 15 14 13 32 32 H 1.09006 * 109.30845 * 170.50404 * 15 14 13 33 33 H 1.08006 * 119.82689 * 359.55595 * 17 16 15 34 34 H 1.08000 * 120.08398 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.06160 * 180.02562 * 19 18 17 36 36 H 1.07995 * 119.81775 * 179.97438 * 20 19 18 37 37 H 1.08995 * 109.27421 * 296.21073 * 22 13 3 38 38 H 1.09003 * 109.26876 * 55.72154 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1297 1.4427 0.0280 5 6 1.5694 2.1416 -1.2493 6 1 0.9463 3.0206 -1.1742 7 6 1.9346 1.6593 -2.4883 8 7 2.6931 0.5889 -2.5799 9 14 1.3518 2.5263 -4.0369 10 1 0.5176 3.6971 -3.6646 11 1 2.5275 2.9855 -4.8193 12 1 0.5475 1.5859 -4.8579 13 7 1.5197 2.1458 1.1802 14 6 1.9999 3.5363 1.2197 15 6 1.1570 4.3122 2.2320 16 6 1.1006 3.5613 3.5376 17 6 0.6936 4.2421 4.6752 18 6 0.6202 3.5898 5.8894 19 6 0.9537 2.2506 5.9719 20 6 1.3600 1.5724 4.8406 21 6 1.4363 2.2270 3.6198 22 6 1.8894 1.4457 2.4144 23 1 -0.3633 -1.0245 -0.0808 24 1 -0.3634 0.5821 -0.8470 25 1 -0.3634 0.4423 0.9275 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.9496 0.2493 -3.4514 29 1 3.0463 3.5538 1.5244 30 1 1.8952 3.9880 0.2332 31 1 0.1466 4.4365 1.8421 32 1 1.6041 5.2925 2.3974 33 1 0.4335 5.2884 4.6109 34 1 0.3031 4.1242 6.7728 35 1 0.8972 1.7364 6.9200 36 1 1.6206 0.5264 4.9062 37 1 1.4188 0.4627 2.4252 38 1 2.9723 1.3266 2.4498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:45 Heat of formation + Delta-G solvation = 6.865781 kcal Electronic energy + Delta-G solvation = -18045.167202 eV Core-core repulsion = 15465.210967 eV Total energy + Delta-G solvation = -2579.956235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96223 -38.61137 -35.61401 -33.88769 -32.84977 -31.74308 -29.85528 -28.50086 -25.76164 -25.05001 -23.70923 -22.94348 -21.30171 -20.09485 -18.25066 -17.56392 -16.81006 -16.32825 -16.04251 -15.83644 -15.38906 -15.09996 -14.79654 -14.23290 -14.14245 -13.89336 -13.68098 -13.33927 -12.90750 -12.82022 -12.68392 -12.63075 -12.37052 -12.27331 -11.97510 -11.81125 -11.55643 -11.44959 -11.08520 -10.77438 -10.45841 -9.64081 -9.39157 -8.91315 -8.07845 -6.17562 0.52744 0.55379 1.41539 1.44351 1.55093 2.43770 2.91403 3.19681 3.34853 3.88421 3.92391 4.13347 4.25694 4.37523 4.44580 4.48970 4.57942 4.63696 4.69514 4.74522 4.82481 4.86617 4.90260 5.05920 5.15026 5.20153 5.24296 5.30572 5.44437 5.46948 5.64734 5.66847 5.72774 5.77215 5.79653 5.92376 6.19813 6.30955 6.42613 6.73212 6.94770 7.49956 8.98232 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.006348 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.990839 B = 4409.644354 C = 4866.760447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C 0.221 3.779 4 H -0.044 1.044 5 C -0.501 4.501 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.524 5.524 14 C 0.057 3.943 15 C -0.068 4.068 16 C -0.084 4.084 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.093 4.093 22 C 0.093 3.907 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 4.933 14.380 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.114 3.886 4 H -0.027 1.027 5 C -0.540 4.540 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.105 4.105 16 C -0.084 4.084 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.093 4.093 22 C -0.035 4.035 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.173 4.828 14.196 15.564 hybrid contribution 1.067 -0.042 -1.241 1.637 sum -3.106 4.786 12.955 14.156 Atomic orbital electron populations 1.21319 0.95660 0.98628 1.00879 1.21456 0.96467 0.97376 0.99370 1.19104 0.90054 0.91870 0.87531 1.02700 1.21251 1.30512 1.11715 0.90473 0.92379 1.25621 0.95358 0.95716 1.01741 1.70016 1.37572 1.23858 1.24607 0.85563 0.77964 0.78757 0.79711 1.19079 1.20983 1.20804 1.62383 1.58978 1.02023 1.01480 1.22045 0.95081 0.90223 0.99821 1.20530 1.00880 0.97805 0.91280 1.19825 0.99120 0.93507 0.95987 1.21346 1.00276 1.00801 0.92073 1.21417 0.99796 0.94946 0.98069 1.21345 0.99414 0.95131 0.98554 1.21246 1.00797 1.00541 0.92142 1.19796 1.00555 0.94265 0.94709 1.20924 0.96586 0.97594 0.88444 0.94440 0.94272 0.93362 0.95500 0.91735 0.93097 0.97001 0.90769 0.90393 0.88904 0.84232 0.83295 0.83535 0.85386 0.90027 0.96225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.47 71.98 0.68 -4.06 16 2 C -0.11 -5.27 4.98 30.60 0.15 -5.12 16 3 C 0.22 11.31 1.74 44.17 0.08 11.39 16 4 H -0.04 -2.59 8.14 -2.39 -0.02 -2.61 16 5 C -0.50 -27.14 6.47 25.60 0.17 -26.97 16 6 H 0.06 3.15 6.84 -2.91 -0.02 3.13 16 7 C 0.01 0.77 5.30 84.66 0.45 1.22 16 8 N -0.92 -52.88 11.31 21.45 0.24 -52.63 16 9 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.52 -22.90 3.79 -880.32 -3.34 -26.24 16 14 C 0.06 2.26 5.39 86.22 0.46 2.73 16 15 C -0.07 -2.14 5.94 29.81 0.18 -1.96 16 16 C -0.08 -2.61 5.77 -19.85 -0.11 -2.72 16 17 C -0.13 -3.11 9.66 22.32 0.22 -2.90 16 18 C -0.12 -2.63 10.05 22.22 0.22 -2.40 16 19 C -0.13 -2.80 10.05 22.22 0.22 -2.58 16 20 C -0.13 -3.53 9.65 22.34 0.22 -3.31 16 21 C -0.09 -3.08 5.79 -19.87 -0.12 -3.20 16 22 C 0.09 3.58 4.56 85.58 0.39 3.97 16 23 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.04 1.87 7.12 -2.39 -0.02 1.85 16 25 H 0.05 2.02 7.37 -2.39 -0.02 2.00 16 26 H 0.03 1.19 6.53 -2.39 -0.02 1.18 16 27 H 0.06 3.53 6.03 -2.39 -0.01 3.51 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.01 0.48 8.05 -2.38 -0.02 0.46 16 30 H 0.07 3.20 6.19 -2.39 -0.01 3.18 16 31 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.08 3.12 6.17 -2.39 -0.01 3.11 16 38 H 0.02 0.81 8.13 -2.39 -0.02 0.79 16 Total: -1.00 -61.02 296.32 3.16 -57.86 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.03 Total: 11.36 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 3.21 Total: -35.93 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.10 Total: -78.87 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -61.02 3.16 -57.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.723 kcal (2) G-P(sol) polarization free energy of solvation -61.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds