Wall clock time and date at job start Sun Mar 29 2020 22:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47141 * 2 1 4 4 C 1.50703 * 109.47594 * 120.00110 * 2 1 3 5 5 H 1.07993 * 120.00035 * 120.27102 * 4 2 1 6 6 C 1.37883 * 119.99819 * 300.00411 * 4 2 1 7 7 N 1.31514 * 119.99724 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47162 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47032 * 119.99614 * 8 6 4 11 11 H 1.48506 * 109.46884 * 239.99614 * 8 6 4 12 12 N 1.46902 * 109.46950 * 240.00111 * 2 1 3 13 13 C 1.46903 * 110.99958 * 106.91838 * 12 2 1 14 14 H 1.08997 * 109.25221 * 33.23982 * 13 12 2 15 15 C 1.52742 * 109.24724 * 273.77536 * 13 12 2 16 16 C 1.53333 * 108.36921 * 188.63848 * 15 13 12 17 17 C 1.52742 * 108.37306 * 69.92609 * 16 15 13 18 18 C 1.50634 * 110.58708 * 308.94091 * 17 16 15 19 19 C 1.38914 * 117.74605 * 197.46870 * 18 17 16 20 20 C 1.37933 * 120.54259 * 180.19612 * 19 18 17 21 21 C 1.38263 * 119.77544 * 0.04343 * 20 19 18 22 22 C 1.37933 * 119.76988 * 359.89284 * 21 20 19 23 23 C 1.37656 * 122.57185 * 17.53625 * 18 17 16 24 24 H 1.09008 * 109.46644 * 306.36174 * 1 2 3 25 25 H 1.08994 * 109.47175 * 66.35751 * 1 2 3 26 26 H 1.08998 * 109.46988 * 186.36553 * 1 2 3 27 27 H 0.97005 * 119.99902 * 180.02562 * 7 6 4 28 28 H 1.00903 * 110.99699 * 230.86845 * 12 2 1 29 29 H 1.08991 * 109.68617 * 308.35708 * 15 13 12 30 30 H 1.09002 * 109.68241 * 68.88400 * 15 13 12 31 31 H 1.08999 * 109.68550 * 189.64396 * 16 15 13 32 32 H 1.08994 * 109.68510 * 310.20788 * 16 15 13 33 33 H 1.09001 * 109.25167 * 69.22689 * 17 16 15 34 34 H 1.09001 * 109.25437 * 188.65469 * 17 16 15 35 35 H 1.07994 * 119.73311 * 0.21449 * 19 18 17 36 36 H 1.07997 * 120.11487 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.12156 * 179.87926 * 21 20 19 38 38 H 1.07999 * 119.72910 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6570 -1.5859 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1457 -2.2877 3.6037 10 1 3.1468 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8161 12 7 2.0196 -0.6925 -1.1995 13 6 2.5714 0.2622 -2.1702 14 1 3.0320 1.0928 -1.6354 15 6 1.4424 0.7943 -3.0506 16 6 2.0623 1.6147 -4.1880 17 6 2.7830 0.6572 -5.1349 18 6 3.7151 -0.2443 -4.3683 19 6 4.7059 -0.9071 -5.0816 20 6 5.5881 -1.7498 -4.4381 21 6 5.4859 -1.9377 -3.0722 22 6 4.5036 -1.2794 -2.3619 23 6 3.6155 -0.4286 -3.0078 24 1 -0.3633 0.6093 0.8277 25 1 -0.3633 0.4121 -0.9413 26 1 -0.3633 -1.0213 0.1139 27 1 0.7095 1.1617 3.4844 28 1 2.7007 -1.3967 -0.9577 29 1 0.8764 -0.0396 -3.4657 30 1 0.7820 1.4275 -2.4581 31 1 1.2778 2.1443 -4.7285 32 1 2.7743 2.3310 -3.7782 33 1 2.0466 0.0494 -5.6606 34 1 3.3566 1.2335 -5.8609 35 1 4.7863 -0.7612 -6.1486 36 1 6.3560 -2.2613 -4.9994 37 1 6.1725 -2.5977 -2.5630 38 1 4.4246 -1.4264 -1.2949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:00 Heat of formation + Delta-G solvation = 10.415320 kcal Electronic energy + Delta-G solvation = -17806.503897 eV Core-core repulsion = 15226.701581 eV Total energy + Delta-G solvation = -2579.802315 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89395 -36.45502 -34.93773 -32.85941 -30.84007 -29.99180 -28.55657 -26.79158 -25.03537 -22.99827 -22.36491 -21.40437 -19.77636 -19.00976 -17.03162 -15.92439 -15.26073 -15.20698 -14.68309 -14.12104 -14.10593 -13.60341 -13.25203 -12.89050 -12.80830 -12.39190 -12.08175 -11.64763 -11.59128 -11.27802 -11.12047 -10.93568 -10.86102 -10.61761 -10.54509 -10.20513 -10.13383 -9.93059 -9.66398 -8.82358 -8.58717 -8.45561 -8.32231 -7.24287 -6.03833 -4.11432 1.60357 1.62827 3.26818 3.34948 3.38433 3.99076 4.38941 4.87174 4.94661 5.09459 5.17258 5.25878 5.27975 5.35880 5.53402 5.56051 5.63679 5.79609 5.90000 6.02393 6.09312 6.17203 6.20172 6.34823 6.35777 6.53855 6.71264 6.76044 6.81150 6.93834 6.99415 7.20118 7.26479 7.34946 7.52623 7.76430 7.99111 8.20322 8.37901 8.67829 9.01810 9.54957 11.01714 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.006517 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.158703 B = 4295.513895 C = 5153.135358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.209 3.791 3 H 0.012 0.988 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.685 5.685 13 C 0.125 3.875 14 H 0.051 0.949 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.077 4.077 18 C -0.075 4.075 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.062 4.062 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.334 0.666 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -0.839 -13.716 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H 0.030 0.970 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.318 5.318 13 C 0.015 3.985 14 H 0.068 0.932 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.062 4.062 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.974 -0.750 -13.848 14.733 hybrid contribution 1.205 -0.310 1.422 1.889 sum 6.179 -1.060 -12.426 13.918 Atomic orbital electron populations 1.21704 0.97801 0.99852 0.98413 1.19230 0.92748 0.92805 0.85061 0.96981 1.21530 1.31547 1.12728 0.91076 0.92462 1.24916 0.94929 0.94916 0.98994 1.69923 1.36497 1.22738 1.23356 0.86522 0.78660 0.79659 0.83053 1.19801 1.21067 1.20914 1.60977 1.40855 1.14470 1.15532 1.20434 0.91402 0.93951 0.92683 0.93155 1.21571 0.97572 0.99350 0.95721 1.21585 0.99571 0.97738 0.96988 1.20451 0.97179 0.96470 0.97294 1.19597 0.96664 0.98299 0.93031 1.21065 0.95949 0.98157 0.99294 1.20966 0.99549 0.99457 0.94787 1.21022 0.98686 1.00134 0.94346 1.21281 0.94907 0.96649 1.00510 1.19928 0.96338 0.96755 0.93207 0.90821 0.97124 0.95230 0.92967 0.84561 0.91261 0.91395 0.91686 0.91966 0.90854 0.91395 0.86683 0.86630 0.86391 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.20 37.16 0.34 -2.64 16 2 C 0.21 5.28 2.66 -68.86 -0.18 5.10 16 3 H 0.01 0.34 7.13 -51.93 -0.37 -0.03 16 4 C -0.53 -14.48 8.60 -34.44 -0.30 -14.77 16 5 H 0.06 1.54 7.36 -52.49 -0.39 1.15 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.31 11.39 55.43 0.63 -24.68 16 8 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.69 -14.84 6.21 -102.34 -0.64 -15.48 16 13 C 0.13 2.36 2.47 -69.03 -0.17 2.19 16 14 H 0.05 1.04 7.31 -51.93 -0.38 0.66 16 15 C -0.10 -1.74 5.26 -26.69 -0.14 -1.88 16 16 C -0.12 -1.61 5.98 -26.69 -0.16 -1.77 16 17 C -0.08 -0.96 5.67 -28.05 -0.16 -1.12 16 18 C -0.08 -1.11 5.74 -104.62 -0.60 -1.71 16 19 C -0.13 -1.65 9.61 -39.44 -0.38 -2.03 16 20 C -0.13 -1.66 10.05 -39.68 -0.40 -2.05 16 21 C -0.12 -1.74 10.05 -39.68 -0.40 -2.14 16 22 C -0.12 -1.89 8.83 -39.44 -0.35 -2.24 16 23 C -0.06 -1.05 5.55 -104.62 -0.58 -1.63 16 24 H 0.07 1.99 6.27 -51.92 -0.33 1.66 16 25 H 0.01 0.23 7.06 -51.93 -0.37 -0.14 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.33 7.18 5.15 -39.29 -0.20 6.98 16 29 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.07 1.21 7.29 -51.93 -0.38 0.83 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.12 1.21 8.05 -52.49 -0.42 0.78 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 2.16 6.57 -52.49 -0.34 1.81 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -28.58 298.79 -9.78 -38.36 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.69 Total: 6.08 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -3.57 Total: -24.99 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.00 Total: -40.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.58 -9.78 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.773 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds