Wall clock time and date at job start Sun Mar 29 2020 22:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47141 * 2 1 4 4 C 1.50703 * 109.47594 * 120.00110 * 2 1 3 5 5 H 1.07993 * 120.00035 * 120.27102 * 4 2 1 6 6 C 1.37883 * 119.99819 * 300.00411 * 4 2 1 7 7 N 1.31514 * 119.99724 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47162 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47032 * 119.99614 * 8 6 4 11 11 H 1.48506 * 109.46884 * 239.99614 * 8 6 4 12 12 N 1.46902 * 109.46950 * 240.00111 * 2 1 3 13 13 C 1.46903 * 110.99958 * 106.91838 * 12 2 1 14 14 H 1.08997 * 109.25221 * 33.23982 * 13 12 2 15 15 C 1.52742 * 109.24724 * 273.77536 * 13 12 2 16 16 C 1.53333 * 108.36921 * 188.63848 * 15 13 12 17 17 C 1.52742 * 108.37306 * 69.92609 * 16 15 13 18 18 C 1.50634 * 110.58708 * 308.94091 * 17 16 15 19 19 C 1.38914 * 117.74605 * 197.46870 * 18 17 16 20 20 C 1.37933 * 120.54259 * 180.19612 * 19 18 17 21 21 C 1.38263 * 119.77544 * 0.04343 * 20 19 18 22 22 C 1.37933 * 119.76988 * 359.89284 * 21 20 19 23 23 C 1.37656 * 122.57185 * 17.53625 * 18 17 16 24 24 H 1.09008 * 109.46644 * 306.36174 * 1 2 3 25 25 H 1.08994 * 109.47175 * 66.35751 * 1 2 3 26 26 H 1.08998 * 109.46988 * 186.36553 * 1 2 3 27 27 H 0.97005 * 119.99902 * 180.02562 * 7 6 4 28 28 H 1.00903 * 110.99699 * 230.86845 * 12 2 1 29 29 H 1.08991 * 109.68617 * 308.35708 * 15 13 12 30 30 H 1.09002 * 109.68241 * 68.88400 * 15 13 12 31 31 H 1.08999 * 109.68550 * 189.64396 * 16 15 13 32 32 H 1.08994 * 109.68510 * 310.20788 * 16 15 13 33 33 H 1.09001 * 109.25167 * 69.22689 * 17 16 15 34 34 H 1.09001 * 109.25437 * 188.65469 * 17 16 15 35 35 H 1.07994 * 119.73311 * 0.21449 * 19 18 17 36 36 H 1.07997 * 120.11487 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.12156 * 179.87926 * 21 20 19 38 38 H 1.07999 * 119.72910 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6570 -1.5859 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1457 -2.2877 3.6037 10 1 3.1468 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8161 12 7 2.0196 -0.6925 -1.1995 13 6 2.5714 0.2622 -2.1702 14 1 3.0320 1.0928 -1.6354 15 6 1.4424 0.7943 -3.0506 16 6 2.0623 1.6147 -4.1880 17 6 2.7830 0.6572 -5.1349 18 6 3.7151 -0.2443 -4.3683 19 6 4.7059 -0.9071 -5.0816 20 6 5.5881 -1.7498 -4.4381 21 6 5.4859 -1.9377 -3.0722 22 6 4.5036 -1.2794 -2.3619 23 6 3.6155 -0.4286 -3.0078 24 1 -0.3633 0.6093 0.8277 25 1 -0.3633 0.4121 -0.9413 26 1 -0.3633 -1.0213 0.1139 27 1 0.7095 1.1617 3.4844 28 1 2.7007 -1.3967 -0.9577 29 1 0.8764 -0.0396 -3.4657 30 1 0.7820 1.4275 -2.4581 31 1 1.2778 2.1443 -4.7285 32 1 2.7743 2.3310 -3.7782 33 1 2.0466 0.0494 -5.6606 34 1 3.3566 1.2335 -5.8609 35 1 4.7863 -0.7612 -6.1486 36 1 6.3560 -2.2613 -4.9994 37 1 6.1725 -2.5977 -2.5630 38 1 4.4246 -1.4264 -1.2949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:00 Heat of formation + Delta-G solvation = -5.257109 kcal Electronic energy + Delta-G solvation = -17807.183504 eV Core-core repulsion = 15226.701581 eV Total energy + Delta-G solvation = -2580.481923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09628 -37.96839 -36.37225 -34.62826 -32.46470 -31.13983 -30.03589 -28.35404 -27.13754 -24.20834 -23.54937 -22.76821 -21.64634 -20.23815 -18.84031 -17.37502 -16.88440 -16.40940 -16.21812 -15.68714 -15.43378 -15.01951 -14.64669 -14.31898 -14.16090 -13.89493 -13.43091 -13.25981 -13.07565 -12.88300 -12.82044 -12.52694 -12.32477 -12.20612 -12.13546 -12.02282 -11.79019 -11.35987 -11.10816 -10.85933 -10.59218 -9.73320 -9.50181 -9.00143 -8.16222 -6.32300 0.49185 0.50712 1.37269 1.38908 1.50494 2.37661 2.87186 3.10965 3.62194 3.74551 3.82172 4.06491 4.19293 4.23417 4.32711 4.40672 4.49085 4.58930 4.69251 4.82283 4.83839 4.98613 5.04508 5.06202 5.12793 5.18126 5.19889 5.27334 5.36106 5.40422 5.50801 5.63157 5.64448 5.66901 5.81485 5.93774 6.13288 6.17439 6.41419 6.74059 6.98629 7.38405 8.88556 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.006517 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.158703 B = 4295.513895 C = 5153.135358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.216 3.784 3 H -0.021 1.021 4 C -0.550 4.550 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.127 3.873 14 H 0.019 0.981 15 C -0.100 4.100 16 C -0.115 4.115 17 C -0.074 4.074 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.090 4.090 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -1.702 -15.985 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 H -0.004 1.004 4 C -0.589 4.589 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.315 5.315 13 C 0.017 3.983 14 H 0.037 0.963 15 C -0.139 4.139 16 C -0.152 4.152 17 C -0.111 4.111 18 C -0.082 4.082 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.090 4.090 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.214 -1.614 -16.134 17.365 hybrid contribution 0.864 -0.041 2.068 2.241 sum 7.079 -1.655 -14.066 15.834 Atomic orbital electron populations 1.21525 0.97605 0.98926 0.98396 1.19005 0.92855 0.91119 0.86242 1.00351 1.21841 1.31848 1.12939 0.92243 0.92623 1.25737 0.95030 0.95607 1.02014 1.70046 1.37275 1.23876 1.24179 0.85469 0.78221 0.78617 0.79106 1.19151 1.20515 1.20327 1.60949 1.41350 1.14823 1.14356 1.20413 0.92848 0.92600 0.92413 0.96307 1.21517 0.96612 0.99325 0.96414 1.21559 1.00125 0.97532 0.96032 1.20521 0.97276 0.96207 0.97091 1.19918 0.97585 0.98667 0.92070 1.21477 0.94697 0.96984 1.00952 1.21409 0.99774 0.98639 0.94168 1.21274 0.98124 0.99913 0.95352 1.21250 0.96535 0.98224 0.99775 1.19813 0.96559 0.98221 0.94420 0.93035 0.95360 0.95863 0.92753 0.84785 0.91547 0.93433 0.89191 0.92581 0.89514 0.88412 0.83148 0.83127 0.84566 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 9.20 71.98 0.66 -4.85 16 2 C 0.22 11.51 2.66 44.17 0.12 11.63 16 3 H -0.02 -1.25 7.13 -2.39 -0.02 -1.26 16 4 C -0.55 -31.17 8.60 25.60 0.22 -30.95 16 5 H 0.06 3.09 7.36 -2.91 -0.02 3.07 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.91 -53.74 11.39 21.45 0.24 -53.49 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.68 -31.10 6.21 -477.70 -2.97 -34.07 16 13 C 0.13 5.02 2.47 44.06 0.11 5.13 16 14 H 0.02 0.86 7.31 -2.39 -0.02 0.84 16 15 C -0.10 -3.42 5.26 30.62 0.16 -3.26 16 16 C -0.11 -2.89 5.98 30.62 0.18 -2.71 16 17 C -0.07 -1.61 5.67 29.74 0.17 -1.44 16 18 C -0.08 -2.23 5.74 -19.86 -0.11 -2.34 16 19 C -0.12 -2.73 9.61 22.36 0.21 -2.51 16 20 C -0.12 -2.68 10.05 22.20 0.22 -2.45 16 21 C -0.13 -3.42 10.05 22.20 0.22 -3.20 16 22 C -0.14 -4.67 8.83 22.36 0.20 -4.48 16 23 C -0.09 -3.06 5.55 -19.86 -0.11 -3.17 16 24 H 0.05 2.89 6.27 -2.38 -0.01 2.87 16 25 H 0.03 1.31 7.06 -2.39 -0.02 1.29 16 26 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 28 H 0.33 15.14 5.15 -89.69 -0.46 14.68 16 29 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 30 H 0.05 1.76 7.29 -2.39 -0.02 1.75 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16 35 H 0.15 2.28 8.05 -2.91 -0.02 2.26 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.10 3.79 6.57 -2.91 -0.02 3.77 16 Total: -1.00 -63.80 298.79 2.59 -61.22 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.58 Total: 23.35 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.70 Total: -43.26 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.72 Total: -87.57 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.80 2.59 -61.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.958 kcal (2) G-P(sol) polarization free energy of solvation -63.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds