Wall clock time and date at job start Sun Mar 29 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48501 * 109.46814 * 239.99717 * 3 2 1 5 5 H 1.48497 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46726 * 120.00409 * 3 2 1 7 7 C 1.37874 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47152 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99994 * 170.00187 * 11 10 9 13 13 C 1.50707 * 109.47121 * 290.24166 * 12 11 10 14 14 C 1.38242 * 119.99739 * 95.85258 * 13 12 11 15 15 C 1.38233 * 119.99599 * 180.02562 * 14 13 12 16 16 C 1.38232 * 120.00385 * 359.95444 * 15 14 13 17 17 C 1.38230 * 119.99910 * 0.28253 * 16 15 14 18 18 C 1.38228 * 120.00283 * 275.87503 * 13 12 11 19 19 C 1.46899 * 111.00331 * 293.95575 * 11 10 9 20 20 C 1.53002 * 117.49774 * 239.64383 * 19 11 10 21 21 C 1.53006 * 117.49850 * 170.98593 * 19 11 10 22 22 H 0.97004 * 119.99653 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47466 * 60.00512 * 9 7 2 24 24 H 1.08999 * 109.47831 * 299.99999 * 9 7 2 25 25 H 1.08999 * 109.46810 * 60.00622 * 10 9 7 26 26 H 1.08994 * 109.47477 * 300.00316 * 10 9 7 27 27 H 1.08995 * 109.47345 * 170.24485 * 12 11 10 28 28 H 1.08997 * 109.47021 * 50.24026 * 12 11 10 29 29 H 1.08002 * 119.99945 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.99537 * 179.97438 * 15 14 13 31 31 H 1.07998 * 120.00086 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.00365 * 179.72380 * 17 16 15 33 33 H 1.08001 * 119.99793 * 0.02562 * 18 13 12 34 34 H 1.08990 * 115.55107 * 25.31502 * 19 11 10 35 35 H 1.09000 * 117.50040 * 0.02562 * 20 19 11 36 36 H 1.09001 * 117.49887 * 145.02443 * 20 19 11 37 37 H 1.09002 * 117.49811 * 214.98132 * 21 19 11 38 38 H 1.09000 * 117.49509 * 359.97236 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9342 0.0001 12 6 2.4169 -6.0656 -0.2380 13 6 2.9056 -6.0264 -1.6631 14 6 4.1209 -5.4388 -1.9610 15 6 4.5690 -5.4024 -3.2682 16 6 3.8023 -5.9545 -4.2773 17 6 2.5848 -6.5377 -3.9800 18 6 2.1386 -6.5777 -2.6723 19 6 0.7655 -5.1114 1.2537 20 6 1.1003 -6.3361 2.1074 21 6 -0.2181 -6.2808 1.3316 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8717 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8904 27 1 1.8850 -7.0005 -0.0620 28 1 3.2677 -5.9984 0.4399 29 1 4.7199 -5.0074 -1.1726 30 1 5.5183 -4.9430 -3.5010 31 1 4.1522 -5.9257 -5.2986 32 1 1.9838 -6.9651 -4.7690 33 1 1.1888 -7.0361 -2.4396 34 1 0.4973 -4.1926 1.7750 35 1 1.8737 -7.0101 1.7392 36 1 1.0520 -6.2231 3.1905 37 1 -1.1333 -6.1313 1.9046 38 1 -0.3126 -6.9183 0.4526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043643338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:35 Heat of formation + Delta-G solvation = 51.407460 kcal Electronic energy + Delta-G solvation = -17403.855155 eV Core-core repulsion = 14825.830392 eV Total energy + Delta-G solvation = -2578.024763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45149 -38.00718 -34.25537 -32.98012 -31.31202 -30.67351 -28.90670 -25.72331 -23.87989 -22.40451 -22.14663 -21.47653 -20.90739 -18.97942 -16.75510 -16.33676 -16.00858 -15.16110 -14.99635 -14.65635 -14.41465 -13.53583 -13.24385 -13.11594 -12.68784 -12.63951 -12.23198 -11.94437 -11.76805 -11.31149 -11.17599 -10.92384 -10.83996 -10.69146 -10.53446 -10.48195 -9.98833 -9.70522 -9.35438 -9.12103 -8.67483 -8.51884 -8.30290 -7.57038 -5.96857 -3.99198 1.55458 1.63068 3.34661 3.38998 3.41295 3.88937 4.17841 4.44172 4.56536 5.00369 5.06605 5.17414 5.19684 5.30273 5.30614 5.39286 5.41190 5.53003 5.68140 5.76918 5.84743 5.86346 6.11167 6.21625 6.23388 6.28527 6.33606 6.38140 6.51232 6.66748 6.70024 6.86333 7.00754 7.21302 7.51455 7.57555 7.80543 7.92547 8.12228 8.46023 9.07723 9.64079 11.14456 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.006962 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.940440 B = 4020.827728 C = 5246.979819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.061 3.939 11 N -0.501 5.501 12 C 0.088 3.912 13 C -0.069 4.069 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.098 4.098 19 C 0.036 3.964 20 C -0.228 4.228 21 C -0.176 4.176 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.016 0.984 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -14.493 -2.527 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.065 4.065 11 N -0.223 5.223 12 C -0.040 4.040 13 C -0.069 4.069 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.144 4.144 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.073 4.073 20 C -0.267 4.267 21 C -0.214 4.214 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.663 -14.336 -2.920 15.355 hybrid contribution 0.963 1.001 0.622 1.522 sum 5.626 -13.335 -2.298 14.655 Atomic orbital electron populations 1.69966 1.05996 1.26625 1.50606 1.24978 0.94812 0.99090 0.95342 0.86681 0.79611 0.83269 0.78578 1.20244 1.21260 1.20308 1.21144 0.92903 0.91074 1.50920 0.92914 1.19077 0.93878 0.89994 0.97724 1.22421 0.96881 0.87964 0.99228 1.61950 1.26828 1.02496 1.30988 1.21155 0.95216 0.95544 0.92053 1.19786 0.94138 0.97509 0.95477 1.21088 0.96238 0.98756 0.96747 1.21074 0.99975 0.99893 0.92993 1.21073 0.95256 0.99186 0.98890 1.21089 0.96383 1.00318 0.96428 1.20962 0.98905 0.99396 0.92397 1.22756 0.99935 0.93374 0.91273 1.23571 1.00001 1.04369 0.98730 1.23010 0.93402 1.03000 1.02007 0.92973 0.95768 0.96583 0.96079 0.91449 0.90351 0.94185 0.86351 0.86366 0.86550 0.86432 0.86254 0.85610 0.88784 0.89268 0.88863 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 10 C 0.06 1.32 4.71 -3.82 -0.02 1.30 16 11 N -0.50 -9.24 4.67 -228.08 -1.06 -10.31 16 12 C 0.09 1.33 3.76 -4.97 -0.02 1.32 16 13 C -0.07 -1.05 4.85 -104.62 -0.51 -1.56 16 14 C -0.11 -1.63 8.23 -39.58 -0.33 -1.96 16 15 C -0.12 -1.64 10.05 -39.59 -0.40 -2.04 16 16 C -0.13 -1.61 10.05 -39.59 -0.40 -2.01 16 17 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 18 C -0.10 -1.41 9.73 -39.58 -0.38 -1.79 16 19 C 0.04 0.62 5.78 -67.71 -0.39 0.23 16 20 C -0.23 -3.12 9.51 -26.69 -0.25 -3.37 16 21 C -0.18 -2.50 10.01 -26.69 -0.27 -2.76 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.02 0.44 6.45 -51.93 -0.33 0.11 16 25 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.07 1.47 6.06 -51.93 -0.31 1.15 16 27 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 28 H 0.04 0.59 7.84 -51.93 -0.41 0.19 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 2.42 6.38 -51.93 -0.33 2.09 16 35 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 1.25 7.86 -51.93 -0.41 0.84 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -30.63 310.37 -10.34 -40.96 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.76 Total: 1.86 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.91 Total: -27.64 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.33 Total: -36.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.63 -10.34 -40.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043643338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.372 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds