Wall clock time and date at job start Sun Mar 29 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48501 * 109.46814 * 239.99717 * 3 2 1 5 5 H 1.48497 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46726 * 120.00409 * 3 2 1 7 7 C 1.37874 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47152 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99994 * 170.00187 * 11 10 9 13 13 C 1.50707 * 109.47121 * 290.24166 * 12 11 10 14 14 C 1.38242 * 119.99739 * 95.85258 * 13 12 11 15 15 C 1.38233 * 119.99599 * 180.02562 * 14 13 12 16 16 C 1.38232 * 120.00385 * 359.95444 * 15 14 13 17 17 C 1.38230 * 119.99910 * 0.28253 * 16 15 14 18 18 C 1.38228 * 120.00283 * 275.87503 * 13 12 11 19 19 C 1.46899 * 111.00331 * 293.95575 * 11 10 9 20 20 C 1.53002 * 117.49774 * 239.64383 * 19 11 10 21 21 C 1.53006 * 117.49850 * 170.98593 * 19 11 10 22 22 H 0.97004 * 119.99653 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47466 * 60.00512 * 9 7 2 24 24 H 1.08999 * 109.47831 * 299.99999 * 9 7 2 25 25 H 1.08999 * 109.46810 * 60.00622 * 10 9 7 26 26 H 1.08994 * 109.47477 * 300.00316 * 10 9 7 27 27 H 1.08995 * 109.47345 * 170.24485 * 12 11 10 28 28 H 1.08997 * 109.47021 * 50.24026 * 12 11 10 29 29 H 1.08002 * 119.99945 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.99537 * 179.97438 * 15 14 13 31 31 H 1.07998 * 120.00086 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.00365 * 179.72380 * 17 16 15 33 33 H 1.08001 * 119.99793 * 0.02562 * 18 13 12 34 34 H 1.08990 * 115.55107 * 25.31502 * 19 11 10 35 35 H 1.09000 * 117.50040 * 0.02562 * 20 19 11 36 36 H 1.09001 * 117.49887 * 145.02443 * 20 19 11 37 37 H 1.09002 * 117.49811 * 214.98132 * 21 19 11 38 38 H 1.09000 * 117.49509 * 359.97236 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9342 0.0001 12 6 2.4169 -6.0656 -0.2380 13 6 2.9056 -6.0264 -1.6631 14 6 4.1209 -5.4388 -1.9610 15 6 4.5690 -5.4024 -3.2682 16 6 3.8023 -5.9545 -4.2773 17 6 2.5848 -6.5377 -3.9800 18 6 2.1386 -6.5777 -2.6723 19 6 0.7655 -5.1114 1.2537 20 6 1.1003 -6.3361 2.1074 21 6 -0.2181 -6.2808 1.3316 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8717 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8904 27 1 1.8850 -7.0005 -0.0620 28 1 3.2677 -5.9984 0.4399 29 1 4.7199 -5.0074 -1.1726 30 1 5.5183 -4.9430 -3.5010 31 1 4.1522 -5.9257 -5.2986 32 1 1.9838 -6.9651 -4.7690 33 1 1.1888 -7.0361 -2.4396 34 1 0.4973 -4.1926 1.7750 35 1 1.8737 -7.0101 1.7392 36 1 1.0520 -6.2231 3.1905 37 1 -1.1333 -6.1313 1.9046 38 1 -0.3126 -6.9183 0.4526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043643338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:35 Heat of formation + Delta-G solvation = 34.489766 kcal Electronic energy + Delta-G solvation = -17404.588761 eV Core-core repulsion = 14825.830392 eV Total energy + Delta-G solvation = -2578.758369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63805 -39.20305 -35.91430 -34.74796 -32.84357 -31.71467 -30.58414 -27.28573 -25.58282 -23.59879 -23.25916 -22.99380 -22.24017 -20.40496 -18.61167 -17.77073 -17.20552 -16.63482 -16.52333 -16.03816 -15.73795 -15.13386 -14.55080 -14.28118 -14.15334 -13.98633 -13.88982 -13.29482 -13.19150 -12.99878 -12.79315 -12.45052 -12.34695 -12.16654 -11.83000 -11.77748 -11.48676 -11.35812 -11.26080 -11.13412 -10.53805 -9.73572 -9.61423 -8.96237 -8.20239 -6.31842 0.48586 0.57479 1.38428 1.41953 1.49853 2.39118 2.72872 3.00824 3.12731 3.24925 3.88375 3.94489 3.98904 4.10541 4.21346 4.23010 4.29999 4.35661 4.50556 4.57758 4.68555 4.72718 4.76602 4.83256 4.94952 5.04825 5.09632 5.17966 5.22255 5.26775 5.43956 5.61680 5.66857 5.67915 5.75097 5.80682 6.12608 6.17725 6.27946 6.34586 6.84669 7.36999 8.91746 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.006962 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.940440 B = 4020.827728 C = 5246.979819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.083 3.917 11 N -0.511 5.511 12 C 0.093 3.907 13 C -0.089 4.089 14 C -0.129 4.129 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.005 4.005 20 C -0.200 4.200 21 C -0.162 4.162 22 H 0.264 0.736 23 H -0.014 1.014 24 H -0.006 1.006 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -15.306 -3.009 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.004 3.996 10 C -0.044 4.044 11 N -0.233 5.233 12 C -0.034 4.034 13 C -0.090 4.090 14 C -0.147 4.147 15 C -0.148 4.148 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.131 4.131 19 C -0.114 4.114 20 C -0.239 4.239 21 C -0.199 4.199 22 H 0.072 0.928 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.780 -15.174 -3.394 16.588 hybrid contribution 0.577 1.205 0.749 1.532 sum 6.357 -13.969 -2.645 15.573 Atomic orbital electron populations 1.70111 1.07821 1.27811 1.51338 1.25952 0.95738 1.03257 0.94584 0.85515 0.78326 0.78089 0.79216 1.19200 1.20655 1.19050 1.21578 0.93425 0.92318 1.51053 0.92344 1.18872 0.94050 0.91919 0.94739 1.21960 0.95366 0.88270 0.98835 1.61867 1.27202 1.02093 1.32098 1.21188 0.94919 0.94823 0.92452 1.19899 0.94745 0.98635 0.95678 1.21246 0.96517 0.99374 0.97602 1.21388 1.00935 0.99836 0.92667 1.21458 0.94951 0.98145 1.00085 1.21446 0.96780 0.99874 0.96567 1.21184 0.99251 0.99671 0.92963 1.22655 1.02962 0.93714 0.92045 1.23613 0.99849 1.01334 0.99077 1.23094 0.93897 1.00512 1.02432 0.92752 0.99523 0.98796 0.96325 0.91779 0.88434 0.93840 0.86506 0.84505 0.83834 0.83987 0.85516 0.88878 0.87278 0.87983 0.87842 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.31 4.96 29.85 0.15 2.46 16 10 C 0.08 3.69 4.71 86.31 0.41 4.10 16 11 N -0.51 -19.12 4.67 -875.52 -4.09 -23.21 16 12 C 0.09 2.76 3.76 85.56 0.32 3.08 16 13 C -0.09 -2.67 4.85 -19.86 -0.10 -2.77 16 14 C -0.13 -3.77 8.23 22.27 0.18 -3.59 16 15 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 16 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 17 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 18 C -0.11 -3.10 9.73 22.27 0.22 -2.88 16 19 C 0.00 -0.16 5.78 44.92 0.26 0.10 16 20 C -0.20 -5.12 9.51 30.62 0.29 -4.82 16 21 C -0.16 -4.36 10.01 30.62 0.31 -4.06 16 22 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 24 H -0.01 -0.37 6.45 -2.39 -0.02 -0.38 16 25 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 26 H 0.06 2.86 6.06 -2.39 -0.01 2.85 16 27 H 0.10 2.49 5.97 -2.39 -0.01 2.47 16 28 H 0.04 1.25 7.84 -2.39 -0.02 1.23 16 29 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.09 3.81 6.38 -2.39 -0.02 3.80 16 35 H 0.11 2.48 5.88 -2.39 -0.01 2.47 16 36 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.10 2.55 7.86 -2.39 -0.02 2.53 16 Total: -1.00 -67.34 310.37 2.65 -64.69 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.02 Total: 17.62 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.40 Total: -48.41 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.80 Total: -80.99 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.34 2.65 -64.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043643338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.180 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds