Wall clock time and date at job start Sun Mar 29 2020 22:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46599 * 2 1 4 4 C 1.50695 * 109.47283 * 240.00416 * 2 1 3 5 5 C 1.38230 * 120.00217 * 186.87256 * 4 2 1 6 6 C 1.38234 * 119.99886 * 179.78604 * 5 4 2 7 7 C 1.38233 * 120.00112 * 0.43889 * 6 5 4 8 8 C 1.38227 * 120.00042 * 359.81305 * 7 6 5 9 9 C 1.38234 * 120.00021 * 359.97438 * 8 7 6 10 10 N 1.46892 * 109.47598 * 119.99727 * 2 1 3 11 11 C 1.46907 * 111.00409 * 287.17545 * 10 2 1 12 12 C 1.50694 * 109.47332 * 195.80529 * 11 10 2 13 13 H 1.07999 * 119.99885 * 5.21013 * 12 11 10 14 14 C 1.37875 * 119.99972 * 185.20076 * 12 11 10 15 15 N 1.31518 * 120.00072 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00020 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47120 * 90.00317 * 16 14 12 18 18 H 1.48497 * 109.47156 * 210.00230 * 16 14 12 19 19 H 1.48506 * 109.47181 * 330.00683 * 16 14 12 20 20 C 1.46905 * 110.99793 * 51.12670 * 10 2 1 21 21 C 1.52997 * 117.49960 * 141.65888 * 20 10 2 22 22 C 1.52991 * 60.00311 * 252.51290 * 21 20 10 23 23 H 1.09006 * 109.46889 * 299.99633 * 1 2 3 24 24 H 1.08995 * 109.47616 * 60.00229 * 1 2 3 25 25 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99757 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.99818 * 180.27364 * 6 5 4 28 28 H 1.08001 * 119.99946 * 179.83365 * 7 6 5 29 29 H 1.08001 * 120.00033 * 179.97438 * 8 7 6 30 30 H 1.07997 * 119.99968 * 180.02562 * 9 8 7 31 31 H 1.08996 * 109.46774 * 315.81368 * 11 10 2 32 32 H 1.09002 * 109.47021 * 75.80788 * 11 10 2 33 33 H 0.96997 * 119.99896 * 179.97438 * 15 14 12 34 34 H 1.09001 * 115.54873 * 287.36915 * 20 10 2 35 35 H 1.09004 * 117.49807 * 0.02562 * 21 20 10 36 36 H 1.09000 * 117.49870 * 145.01525 * 21 20 10 37 37 H 1.09002 * 117.50000 * 252.51664 * 22 21 20 38 38 H 1.09000 * 117.50090 * 107.48291 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 3.3833 -0.9621 -1.3801 6 6 3.8435 -1.6175 -2.5068 7 6 2.9539 -2.0132 -3.4880 8 6 1.6036 -1.7568 -3.3408 9 6 1.1428 -1.1052 -2.2121 10 7 2.0198 -0.6924 1.1994 11 6 1.8135 0.1267 2.4013 12 6 2.6534 -0.4155 3.5289 13 1 3.3408 -1.2285 3.3476 14 6 2.5446 0.1266 4.7920 15 7 1.7073 1.1165 5.0128 16 14 3.5863 -0.5450 6.1896 17 1 4.8703 0.1985 6.2514 18 1 2.8574 -0.3816 7.4730 19 1 3.8594 -1.9858 5.9553 20 6 1.3838 -2.0087 1.3439 21 6 2.2529 -3.1614 1.8507 22 6 1.8236 -3.1151 0.3830 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 4.0788 -0.6493 -0.6153 27 1 4.8985 -1.8182 -2.6216 28 1 3.3138 -2.5229 -4.3695 29 1 0.9086 -2.0656 -4.1077 30 1 0.0878 -0.9053 -2.0970 31 1 2.1048 1.1563 2.1937 32 1 0.7615 0.0969 2.6852 33 1 1.6304 1.4976 5.9015 34 1 0.3377 -1.9944 1.6500 35 1 3.2965 -2.9429 2.0773 36 1 1.7787 -3.9056 2.4906 37 1 1.0669 -3.8288 0.0571 38 1 2.5848 -2.8662 -0.3564 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070069877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:38 Heat of formation + Delta-G solvation = 42.839824 kcal Electronic energy + Delta-G solvation = -18051.233404 eV Core-core repulsion = 15472.837121 eV Total energy + Delta-G solvation = -2578.396283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85774 -38.73884 -35.79658 -34.90355 -32.51758 -31.69770 -29.71604 -28.13295 -25.10975 -24.12766 -23.10435 -22.97902 -22.08771 -20.14645 -18.66578 -17.61109 -16.85117 -16.47842 -16.19776 -15.82913 -15.54345 -15.28386 -14.80705 -14.24664 -13.99786 -13.91449 -13.58540 -13.36831 -13.18708 -12.79178 -12.73836 -12.43025 -12.28189 -12.20993 -12.01255 -11.69929 -11.49654 -11.26516 -11.15611 -10.68545 -10.55424 -9.64934 -9.39547 -8.97750 -8.15842 -6.23999 0.60479 0.66247 1.40714 1.41520 1.52712 2.41755 2.97117 3.11218 3.17244 3.28460 3.87611 4.09769 4.19254 4.25418 4.29633 4.35463 4.38599 4.44814 4.50095 4.71385 4.77973 4.87516 4.88939 4.89780 5.00922 5.13057 5.17817 5.21868 5.27438 5.32898 5.39259 5.45047 5.71459 5.74817 5.76971 5.92631 6.12232 6.27302 6.45303 6.68918 6.93150 7.44917 8.94751 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.006373 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.452658 B = 4392.203479 C = 4617.096945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 H 0.066 0.934 4 C -0.065 4.065 5 C -0.112 4.112 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.122 4.122 9 C -0.125 4.125 10 N -0.501 5.501 11 C 0.214 3.786 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.938 5.938 16 Si 0.963 3.037 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.019 3.981 21 C -0.164 4.164 22 C -0.151 4.151 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.130 0.870 31 H -0.003 1.003 32 H -0.031 1.031 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -7.484 -15.993 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 H 0.084 0.916 4 C -0.065 4.065 5 C -0.131 4.131 6 C -0.146 4.146 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.144 4.144 10 N -0.224 5.224 11 C 0.088 3.912 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.580 5.580 16 Si 0.788 3.212 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.090 4.090 21 C -0.201 4.201 22 C -0.188 4.188 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.151 0.849 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.015 0.985 32 H -0.014 1.014 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.158 -7.435 -15.898 17.551 hybrid contribution -0.508 0.503 1.549 1.706 sum -0.350 -6.932 -14.349 15.939 Atomic orbital electron populations 1.22381 0.96504 1.02287 1.01659 1.20592 0.93466 0.96441 0.89095 0.91589 1.19692 0.93951 0.98416 0.94464 1.20994 0.95330 0.99160 0.97608 1.21330 1.00639 0.98807 0.93853 1.21398 0.93394 1.00220 0.99431 1.21375 0.96285 0.98658 0.97663 1.21286 0.99836 0.99175 0.94061 1.62002 1.55907 1.02241 1.02289 1.19330 0.93493 0.91271 0.87142 1.21471 1.21995 1.17637 0.93430 0.91735 1.25849 0.96935 0.95480 1.01444 1.70090 1.38436 1.26680 1.22758 0.85474 0.78523 0.79079 0.78104 1.20090 1.21027 1.18884 1.21940 0.94627 0.86731 1.05740 1.22851 1.00199 1.00015 0.97062 1.23164 1.03501 0.99443 0.92688 0.94764 0.90140 0.91630 0.87817 0.84931 0.83847 0.83840 0.85177 0.98540 1.01357 0.92964 0.92133 0.90218 0.88845 0.87905 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 7.23 71.98 0.52 -5.03 16 2 C 0.11 4.11 2.63 44.17 0.12 4.23 16 3 H 0.07 2.61 7.80 -2.38 -0.02 2.59 16 4 C -0.06 -1.98 3.38 -19.87 -0.07 -2.05 16 5 C -0.11 -3.40 7.65 22.27 0.17 -3.23 16 6 C -0.13 -3.08 10.02 22.27 0.22 -2.86 16 7 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 8 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 9 C -0.13 -3.13 8.98 22.27 0.20 -2.93 16 10 N -0.50 -21.69 4.25 -854.78 -3.63 -25.33 16 11 C 0.21 11.48 4.24 85.55 0.36 11.85 16 12 C -0.51 -28.90 8.66 25.60 0.22 -28.68 16 13 H 0.06 3.62 6.46 -2.91 -0.02 3.60 16 14 C 0.00 0.00 5.46 84.65 0.46 0.47 16 15 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 16 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 C 0.02 0.73 3.26 44.91 0.15 0.88 16 21 C -0.16 -6.05 9.61 30.59 0.29 -5.75 16 22 C -0.15 -4.79 9.21 30.59 0.28 -4.51 16 23 H 0.03 1.28 7.17 -2.38 -0.02 1.26 16 24 H 0.08 2.14 7.18 -2.39 -0.02 2.12 16 25 H 0.06 2.04 6.32 -2.39 -0.02 2.03 16 26 H 0.10 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 28 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.13 2.94 5.92 -2.91 -0.02 2.92 16 31 H 0.00 -0.20 7.77 -2.39 -0.02 -0.22 16 32 H -0.03 -1.84 7.36 -2.39 -0.02 -1.86 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.06 2.51 7.31 -2.39 -0.02 2.50 16 35 H 0.08 3.22 7.38 -2.39 -0.02 3.20 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.10 3.24 5.22 -2.39 -0.01 3.23 16 Total: -1.00 -64.05 301.51 3.09 -60.96 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 1.03 Total: 16.47 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 3.38 Total: -42.24 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.35 Total: -82.33 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.05 3.09 -60.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070069877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.800 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds