Wall clock time and date at job start Sun Mar 29 2020 22:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38262 * 119.99872 * 2 1 4 4 C 1.38213 * 119.99526 * 180.22825 * 3 2 1 5 5 C 1.38253 * 120.00198 * 359.81868 * 4 3 2 6 6 C 1.38209 * 120.00256 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00022 * 179.79306 * 2 1 3 8 8 C 1.50703 * 119.99996 * 359.97438 * 7 2 1 9 9 H 1.08995 * 110.63942 * 358.03682 * 8 7 2 10 10 C 1.55154 * 110.71804 * 234.70214 * 8 7 2 11 11 C 1.54910 * 101.58031 * 206.13347 * 10 8 7 12 12 H 1.08998 * 110.36709 * 278.17139 * 11 10 8 13 13 C 1.53005 * 110.36640 * 155.84950 * 11 10 8 14 14 N 1.47426 * 104.83209 * 37.01037 * 11 10 8 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 11 10 16 16 H 1.08000 * 120.00279 * 0.02562 * 15 14 11 17 17 C 1.38819 * 119.99449 * 179.97438 * 15 14 11 18 18 N 1.31612 * 120.00226 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99518 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47477 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47220 * 120.00141 * 19 17 15 22 22 H 1.48503 * 109.46906 * 239.99762 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 11 10 24 24 H 1.08995 * 109.46636 * 270.20924 * 1 2 3 25 25 H 1.09000 * 109.46967 * 30.20894 * 1 2 3 26 26 H 1.08994 * 109.47136 * 150.20537 * 1 2 3 27 27 H 1.07996 * 120.00074 * 0.06850 * 3 2 1 28 28 H 1.08000 * 119.99920 * 179.83354 * 4 3 2 29 29 H 1.08003 * 119.99787 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.00166 * 180.02562 * 6 5 4 31 31 H 1.09002 * 111.00945 * 88.06154 * 10 8 7 32 32 H 1.08999 * 111.00353 * 324.20692 * 10 8 7 33 33 H 1.08998 * 109.46968 * 303.13545 * 13 11 10 34 34 H 1.09003 * 109.46978 * 63.13752 * 13 11 10 35 35 H 1.08999 * 109.47251 * 183.13841 * 13 11 10 36 36 H 0.97002 * 120.00454 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.88389 * 120.48020 * 23 14 11 38 38 H 1.09004 * 109.87600 * 241.48978 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5807 -1.1969 -0.0014 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0096 9 1 0.3697 -2.3249 0.0443 10 6 1.8968 -3.3921 1.1973 11 6 1.5813 -4.8106 0.6606 12 1 0.5258 -5.0434 0.8016 13 6 2.4558 -5.8520 1.3619 14 7 1.9062 -4.7514 -0.7762 15 6 2.2357 -5.8215 -1.5646 16 1 2.2730 -6.8139 -1.1401 17 6 2.5207 -5.6308 -2.9097 18 7 2.4738 -4.4216 -3.4274 19 14 2.9695 -7.0906 -3.9854 20 1 2.9513 -8.3311 -3.1693 21 1 1.9864 -7.2109 -5.0918 22 1 4.3282 -6.8901 -4.5501 23 6 1.8183 -3.3533 -1.2221 24 1 -0.3632 0.0038 1.0276 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3633 -0.8918 -0.5106 27 1 1.6584 2.1327 0.0011 28 1 4.1205 2.1326 -0.0075 29 1 5.3517 0.0000 -0.0099 30 1 4.1207 -2.1322 -0.0018 31 1 1.3143 -3.1747 2.0926 32 1 2.9634 -3.2753 1.3891 33 1 3.5064 -5.5965 1.2239 34 1 2.2219 -5.8654 2.4264 35 1 2.2621 -6.8360 0.9349 36 1 2.6733 -4.2882 -4.3672 37 1 2.7807 -3.0294 -1.6185 38 1 1.0501 -3.2566 -1.9894 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076386258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:02 Heat of formation + Delta-G solvation = 38.463295 kcal Electronic energy + Delta-G solvation = -18007.038272 eV Core-core repulsion = 15428.452208 eV Total energy + Delta-G solvation = -2578.586064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48521 -37.25917 -33.10479 -32.38504 -31.64518 -29.23932 -28.52425 -26.52000 -24.85960 -24.17699 -22.24966 -20.82231 -19.41928 -19.15287 -16.47621 -16.19408 -15.51478 -14.75293 -14.41523 -14.07411 -13.58012 -13.49353 -12.86206 -12.76522 -12.68222 -12.21308 -11.93068 -11.82694 -11.65308 -11.44617 -11.14764 -10.82264 -10.74271 -10.64950 -10.59672 -10.18429 -9.99263 -9.71743 -9.65662 -9.54303 -8.58557 -8.34545 -8.05659 -6.76462 -5.64914 -2.97733 1.74740 1.79789 3.42480 3.47938 3.50405 4.13842 4.53970 5.11964 5.15227 5.29177 5.36863 5.49096 5.54464 5.64814 5.65572 5.74392 5.81786 5.89594 5.98617 6.01925 6.14615 6.21405 6.25319 6.34528 6.41218 6.47916 6.56034 6.62775 6.73273 6.83525 6.89967 6.93034 7.12312 7.23685 7.42437 7.64516 7.69652 7.90194 8.32100 9.28339 9.89466 10.56045 11.46640 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.007038 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.864706 B = 3977.392182 C = 4381.187982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.102 4.102 7 C -0.047 4.047 8 C -0.090 4.090 9 H 0.078 0.922 10 C -0.117 4.117 11 C 0.153 3.847 12 H 0.027 0.973 13 C -0.146 4.146 14 N -0.601 5.601 15 C -0.221 4.221 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.908 3.092 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.190 3.810 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.250 0.750 37 H 0.051 0.949 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 8.706 8.834 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.048 4.048 8 C -0.109 4.109 9 H 0.096 0.904 10 C -0.155 4.155 11 C 0.046 3.954 12 H 0.045 0.955 13 C -0.204 4.204 14 N -0.327 5.327 15 C -0.349 4.349 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.569 5.569 19 Si 0.739 3.261 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.066 3.934 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.826 8.650 8.599 12.225 hybrid contribution 0.346 -0.667 -0.763 1.071 sum -0.480 7.982 7.836 11.196 Atomic orbital electron populations 1.20833 0.91738 1.02814 1.01843 1.19758 0.95846 0.92686 1.00755 1.20886 0.94205 0.97025 1.02191 1.20970 0.94267 0.97620 1.02229 1.21061 0.99473 0.92623 1.01335 1.21079 0.93989 0.98116 0.98856 1.19722 0.93568 0.94158 0.97335 1.21655 0.98565 0.91650 0.99005 0.90386 1.22876 1.00759 0.95778 0.96089 1.21203 0.95852 0.92425 0.85885 0.95532 1.21958 1.00490 1.00041 0.97906 1.44572 1.81214 1.03712 1.03249 1.19075 1.38907 0.86910 0.90045 0.90313 1.24790 1.02350 0.96639 0.96902 1.69968 1.55484 1.18998 1.12484 0.86094 0.77695 0.81649 0.80656 1.20590 1.21878 1.21895 1.21217 1.00547 0.81897 0.89778 0.91662 0.92087 0.90733 0.86800 0.86861 0.86675 0.85793 0.92422 0.91465 0.92873 0.94165 0.92878 0.93914 0.93043 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.38 36.01 0.34 -1.21 16 2 C -0.09 -1.43 5.88 -104.62 -0.62 -2.04 16 3 C -0.13 -1.78 9.70 -39.58 -0.38 -2.17 16 4 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 5 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 6 C -0.10 -1.81 8.12 -39.58 -0.32 -2.13 16 7 C -0.05 -0.85 4.93 -104.62 -0.52 -1.36 16 8 C -0.09 -1.72 2.92 -89.94 -0.26 -1.98 16 9 H 0.08 1.42 5.62 -51.93 -0.29 1.12 16 10 C -0.12 -2.10 5.88 -24.58 -0.14 -2.25 16 11 C 0.15 3.17 3.84 -66.41 -0.25 2.91 16 12 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 13 C -0.15 -2.71 8.92 37.16 0.33 -2.38 16 14 N -0.60 -15.26 3.31 -162.60 -0.54 -15.79 16 15 C -0.22 -6.12 9.62 -15.06 -0.14 -6.26 16 16 H 0.08 2.11 6.79 -52.49 -0.36 1.76 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -27.34 10.31 55.49 0.57 -26.77 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 C 0.19 4.65 4.88 -3.07 -0.01 4.64 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.07 1.07 6.14 -51.93 -0.32 0.75 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.12 2.32 7.30 -52.49 -0.38 1.93 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.22 6.76 -51.93 -0.35 0.86 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 1.03 7.13 -51.93 -0.37 0.65 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.05 1.40 6.25 -51.93 -0.32 1.07 16 38 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -30.15 298.90 -9.09 -39.24 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.72 Total: 0.75 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.88 Total: -19.24 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.03 Total: -42.57 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.15 -9.09 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076386258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.700 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds