Wall clock time and date at job start Sun Mar 29 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.43948 * 2 1 4 4 C 1.53041 * 109.43751 * 240.07926 * 2 1 3 5 5 C 1.53385 * 107.92836 * 192.67652 * 4 2 1 6 6 N 1.46436 * 108.78315 * 68.18860 * 5 4 2 7 7 C 1.46899 * 110.99796 * 72.26178 * 6 5 4 8 8 C 1.52996 * 109.47096 * 170.00139 * 7 6 5 9 9 C 1.50699 * 109.47379 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00013 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00079 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00262 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00088 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47079 * 90.00642 * 13 11 9 15 15 H 1.48500 * 109.46975 * 210.00127 * 13 11 9 16 16 H 1.48494 * 109.46921 * 330.00101 * 13 11 9 17 17 C 1.39456 * 113.10097 * 306.93518 * 6 5 4 18 18 C 1.39616 * 117.58034 * 199.69847 * 17 6 5 19 19 C 1.37803 * 120.42255 * 180.21037 * 18 17 6 20 20 C 1.38311 * 119.94749 * 359.97438 * 19 18 17 21 21 C 1.38058 * 119.89097 * 359.85619 * 20 19 18 22 22 C 1.38364 * 123.02841 * 19.66432 * 17 6 5 23 23 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47525 * 299.92058 * 1 2 3 25 25 H 1.09006 * 109.47202 * 59.91836 * 1 2 3 26 26 H 1.09009 * 109.76959 * 73.07339 * 4 2 1 27 27 H 1.09001 * 109.77597 * 312.29052 * 4 2 1 28 28 H 1.09002 * 109.61057 * 188.02249 * 5 4 2 29 29 H 1.09000 * 109.60948 * 308.35876 * 5 4 2 30 30 H 1.08999 * 109.47461 * 290.00236 * 7 6 5 31 31 H 1.09004 * 109.47237 * 49.99825 * 7 6 5 32 32 H 1.09001 * 109.46870 * 299.99850 * 8 7 6 33 33 H 1.08994 * 109.47394 * 59.99816 * 8 7 6 34 34 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 35 35 H 1.08002 * 119.78856 * 0.22398 * 18 17 6 36 36 H 1.08000 * 120.02873 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.05600 * 179.86149 * 20 19 18 38 38 H 1.07996 * 119.75368 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0392 -0.7199 -1.2508 5 6 3.5390 -0.9832 -1.0663 6 7 3.7165 -1.9734 -0.0022 7 6 3.3061 -3.3099 -0.4530 8 6 3.7333 -4.3511 0.5834 9 6 3.3129 -5.7223 0.1207 10 1 2.7925 -5.8394 -0.8184 11 6 3.5915 -6.8273 0.8967 12 7 3.2241 -8.0240 0.4932 13 14 4.4910 -6.6248 2.5214 14 1 3.5038 -6.4174 3.6111 15 1 5.2880 -7.8461 2.8014 16 1 5.3960 -5.4502 2.4430 17 6 3.0655 -1.6271 1.1815 18 6 3.4914 -2.2460 2.3583 19 6 2.8862 -1.9505 3.5606 20 6 1.8504 -1.0350 3.6056 21 6 1.4273 -0.4172 2.4457 22 6 2.0319 -0.7087 1.2329 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5126 0.8907 25 1 -0.3634 0.5151 -0.8893 26 1 1.8803 -0.0923 -2.1279 27 1 1.5111 -1.6655 -1.3729 28 1 3.9604 -1.3658 -1.9960 29 1 4.0420 -0.0562 -0.7910 30 1 2.2227 -3.3371 -0.5700 31 1 3.7804 -3.5325 -1.4088 32 1 4.8167 -4.3239 0.7003 33 1 3.2590 -4.1285 1.5391 34 1 3.4205 -8.8013 1.0390 35 1 4.3004 -2.9607 2.3262 36 1 3.2210 -2.4327 4.4671 37 1 1.3733 -0.8038 4.5465 38 1 0.6186 0.2975 2.4835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076950445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:37 Heat of formation + Delta-G solvation = 23.681743 kcal Electronic energy + Delta-G solvation = -18154.633085 eV Core-core repulsion = 15575.406045 eV Total energy + Delta-G solvation = -2579.227040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49892 -36.68941 -35.33301 -32.92354 -30.58376 -30.02758 -29.67904 -27.47672 -24.57045 -23.30952 -22.85135 -21.01455 -20.88115 -18.78053 -16.87819 -16.44569 -15.98241 -15.31626 -14.39277 -14.27186 -14.16972 -13.62767 -13.60219 -13.49577 -12.81448 -12.56656 -12.47339 -12.17713 -11.84907 -11.58726 -11.52623 -11.41502 -11.06241 -10.93384 -10.43303 -10.32894 -10.04246 -9.94419 -9.74671 -9.15446 -8.84701 -8.56667 -8.28823 -7.45139 -6.04857 -4.02576 1.69765 1.76883 3.31623 3.38750 3.42336 4.03465 4.29749 4.45487 4.76610 4.80757 4.99121 5.19230 5.30108 5.36716 5.40707 5.48842 5.54521 5.62011 5.73202 5.78744 5.86361 5.90375 6.00051 6.11687 6.16459 6.18373 6.23890 6.35948 6.44708 6.68153 6.74267 6.79148 6.89135 7.07434 7.22384 7.38531 7.56276 7.78384 7.89854 8.51659 8.98594 9.57445 11.08538 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.007930 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.477432 B = 3530.192483 C = 4141.194233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 H 0.076 0.924 4 C -0.155 4.155 5 C 0.057 3.943 6 N -0.505 5.505 7 C 0.076 3.924 8 C -0.020 4.020 9 C -0.520 4.520 10 H 0.070 0.930 11 C 0.069 3.931 12 N -0.903 5.903 13 Si 0.876 3.124 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.263 1.263 17 C 0.126 3.874 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.111 4.111 22 C -0.122 4.122 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 17.262 1.514 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 H 0.094 0.906 4 C -0.194 4.194 5 C -0.071 4.071 6 N -0.221 5.221 7 C -0.048 4.048 8 C -0.057 4.057 9 C -0.558 4.558 10 H 0.088 0.912 11 C -0.132 4.132 12 N -0.542 5.542 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.187 1.187 17 C 0.029 3.971 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.160 4.160 21 C -0.129 4.129 22 C -0.125 4.125 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.252 17.017 1.588 17.239 hybrid contribution -0.368 -0.105 0.718 0.814 sum -2.620 16.912 2.306 17.269 Atomic orbital electron populations 1.21856 0.94399 1.02290 1.01381 1.20011 0.95763 0.98484 0.92159 0.90562 1.22286 0.98240 1.01469 0.97380 1.22181 0.94560 0.95679 0.94662 1.58933 1.55651 1.04499 1.03019 1.22212 0.97996 0.84713 0.99897 1.19971 0.97015 0.93810 0.94912 1.21044 1.37795 0.89358 1.07623 0.91152 1.24968 0.95278 0.95098 0.97873 1.69910 1.47399 0.98351 1.38556 0.86829 0.80518 0.77909 0.84459 1.20151 1.21361 1.18714 1.18504 0.91512 0.95807 0.91310 1.21395 1.01060 0.99636 0.90971 1.20969 0.96894 0.98070 0.97572 1.20926 0.98553 0.98670 0.97862 1.20854 0.99798 1.00316 0.91964 1.19836 0.96085 1.01404 0.95190 0.92335 0.92462 0.92636 0.91103 0.90936 0.90123 0.90851 0.94717 0.90839 0.95742 0.95458 0.92721 0.84852 0.86376 0.86708 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.74 37.16 0.32 -1.27 16 2 C -0.05 -0.59 2.86 -91.70 -0.26 -0.85 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.15 -2.01 5.35 -26.51 -0.14 -2.15 16 5 C 0.06 0.81 5.81 -3.88 -0.02 0.79 16 6 N -0.51 -9.09 4.59 -171.26 -0.79 -9.88 16 7 C 0.08 1.56 4.51 -3.83 -0.02 1.54 16 8 C -0.02 -0.48 2.81 -27.89 -0.08 -0.56 16 9 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 13 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 17 C 0.13 2.26 5.06 -83.83 -0.42 1.84 16 18 C -0.11 -2.06 7.37 -39.23 -0.29 -2.35 16 19 C -0.12 -1.89 10.04 -39.71 -0.40 -2.29 16 20 C -0.14 -2.04 10.05 -39.62 -0.40 -2.44 16 21 C -0.11 -1.58 9.06 -39.51 -0.36 -1.94 16 22 C -0.12 -1.91 5.41 -104.39 -0.56 -2.47 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.58 6.52 -51.93 -0.34 0.24 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.07 1.07 6.60 -51.93 -0.34 0.73 16 28 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 29 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.03 0.73 6.90 -51.93 -0.36 0.38 16 31 H 0.07 1.47 7.90 -51.93 -0.41 1.06 16 32 H 0.02 0.60 7.07 -51.93 -0.37 0.24 16 33 H 0.03 0.67 4.48 -51.93 -0.23 0.43 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.13 2.66 6.17 -52.49 -0.32 2.34 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.35 6.50 -52.49 -0.34 1.01 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -30.89 292.08 -9.01 -39.90 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.67 Total: 1.10 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.06 Total: -25.47 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.01 Total: -37.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.89 -9.01 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076950445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.577 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds