Wall clock time and date at job start Sun Mar 29 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.43948 * 2 1 4 4 C 1.53041 * 109.43751 * 240.07926 * 2 1 3 5 5 C 1.53385 * 107.92836 * 192.67652 * 4 2 1 6 6 N 1.46436 * 108.78315 * 68.18860 * 5 4 2 7 7 C 1.46899 * 110.99796 * 72.26178 * 6 5 4 8 8 C 1.52996 * 109.47096 * 170.00139 * 7 6 5 9 9 C 1.50699 * 109.47379 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00013 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00079 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00262 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00088 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47079 * 90.00642 * 13 11 9 15 15 H 1.48500 * 109.46975 * 210.00127 * 13 11 9 16 16 H 1.48494 * 109.46921 * 330.00101 * 13 11 9 17 17 C 1.39456 * 113.10097 * 306.93518 * 6 5 4 18 18 C 1.39616 * 117.58034 * 199.69847 * 17 6 5 19 19 C 1.37803 * 120.42255 * 180.21037 * 18 17 6 20 20 C 1.38311 * 119.94749 * 359.97438 * 19 18 17 21 21 C 1.38058 * 119.89097 * 359.85619 * 20 19 18 22 22 C 1.38364 * 123.02841 * 19.66432 * 17 6 5 23 23 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47525 * 299.92058 * 1 2 3 25 25 H 1.09006 * 109.47202 * 59.91836 * 1 2 3 26 26 H 1.09009 * 109.76959 * 73.07339 * 4 2 1 27 27 H 1.09001 * 109.77597 * 312.29052 * 4 2 1 28 28 H 1.09002 * 109.61057 * 188.02249 * 5 4 2 29 29 H 1.09000 * 109.60948 * 308.35876 * 5 4 2 30 30 H 1.08999 * 109.47461 * 290.00236 * 7 6 5 31 31 H 1.09004 * 109.47237 * 49.99825 * 7 6 5 32 32 H 1.09001 * 109.46870 * 299.99850 * 8 7 6 33 33 H 1.08994 * 109.47394 * 59.99816 * 8 7 6 34 34 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 35 35 H 1.08002 * 119.78856 * 0.22398 * 18 17 6 36 36 H 1.08000 * 120.02873 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.05600 * 179.86149 * 20 19 18 38 38 H 1.07996 * 119.75368 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0392 -0.7199 -1.2508 5 6 3.5390 -0.9832 -1.0663 6 7 3.7165 -1.9734 -0.0022 7 6 3.3061 -3.3099 -0.4530 8 6 3.7333 -4.3511 0.5834 9 6 3.3129 -5.7223 0.1207 10 1 2.7925 -5.8394 -0.8184 11 6 3.5915 -6.8273 0.8967 12 7 3.2241 -8.0240 0.4932 13 14 4.4910 -6.6248 2.5214 14 1 3.5038 -6.4174 3.6111 15 1 5.2880 -7.8461 2.8014 16 1 5.3960 -5.4502 2.4430 17 6 3.0655 -1.6271 1.1815 18 6 3.4914 -2.2460 2.3583 19 6 2.8862 -1.9505 3.5606 20 6 1.8504 -1.0350 3.6056 21 6 1.4273 -0.4172 2.4457 22 6 2.0319 -0.7087 1.2329 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5126 0.8907 25 1 -0.3634 0.5151 -0.8893 26 1 1.8803 -0.0923 -2.1279 27 1 1.5111 -1.6655 -1.3729 28 1 3.9604 -1.3658 -1.9960 29 1 4.0420 -0.0562 -0.7910 30 1 2.2227 -3.3371 -0.5700 31 1 3.7804 -3.5325 -1.4088 32 1 4.8167 -4.3239 0.7003 33 1 3.2590 -4.1285 1.5391 34 1 3.4205 -8.8013 1.0390 35 1 4.3004 -2.9607 2.3262 36 1 3.2210 -2.4327 4.4671 37 1 1.3733 -0.8038 4.5465 38 1 0.6186 0.2975 2.4835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076950445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:36 Heat of formation + Delta-G solvation = 5.593554 kcal Electronic energy + Delta-G solvation = -18155.417448 eV Core-core repulsion = 15575.406045 eV Total energy + Delta-G solvation = -2580.011403 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72215 -37.93297 -36.60535 -34.96534 -32.38312 -31.24001 -30.86619 -28.79047 -26.31813 -24.47203 -24.01964 -22.68377 -22.20527 -20.01045 -19.01430 -17.70461 -17.16611 -16.67599 -16.24990 -15.81151 -15.38890 -14.94082 -14.89230 -14.71156 -14.58325 -13.93738 -13.83769 -13.34079 -13.31229 -13.03936 -12.75463 -12.65271 -12.54390 -12.15456 -11.94027 -11.88312 -11.77205 -11.49889 -11.33975 -11.15648 -10.79538 -10.14327 -9.53052 -8.76365 -8.33221 -6.36609 0.49098 0.53737 1.31670 1.33378 1.45805 2.32723 2.77383 3.01797 3.05383 3.73033 3.78467 3.95280 4.05772 4.25177 4.28366 4.41256 4.42283 4.48018 4.53086 4.66468 4.69691 4.75992 4.81312 4.87076 4.94155 5.02121 5.08637 5.19066 5.23443 5.25752 5.38905 5.44890 5.52674 5.57671 5.63416 5.69174 5.96626 6.17544 6.23014 6.58055 6.70367 7.27452 8.83461 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.007930 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.477432 B = 3530.192483 C = 4141.194233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 H 0.098 0.902 4 C -0.150 4.150 5 C 0.053 3.947 6 N -0.513 5.513 7 C 0.091 3.909 8 C -0.009 4.009 9 C -0.532 4.532 10 H 0.033 0.967 11 C 0.011 3.989 12 N -0.948 5.948 13 Si 0.943 3.057 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.248 1.248 17 C 0.096 3.904 18 C -0.141 4.141 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.110 4.110 22 C -0.127 4.127 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.019 0.981 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 20.166 2.819 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 H 0.116 0.884 4 C -0.189 4.189 5 C -0.074 4.074 6 N -0.230 5.230 7 C -0.034 4.034 8 C -0.047 4.047 9 C -0.570 4.570 10 H 0.051 0.949 11 C -0.187 4.187 12 N -0.589 5.589 13 Si 0.766 3.234 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.172 1.172 17 C 0.000 4.000 18 C -0.161 4.161 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.128 4.128 22 C -0.129 4.129 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.813 19.949 2.887 20.352 hybrid contribution -0.260 -0.964 0.270 1.034 sum -3.073 18.985 3.157 19.490 Atomic orbital electron populations 1.21835 0.93078 1.01413 1.03205 1.20123 0.96770 0.98996 0.90499 0.88353 1.22254 0.96718 1.00936 0.99006 1.22334 0.95967 0.95269 0.93838 1.58824 1.56199 1.03762 1.04206 1.21843 0.96941 0.86057 0.98581 1.19810 0.96394 0.92424 0.96022 1.21380 1.37273 0.91975 1.06374 0.94900 1.25899 0.96195 0.94584 1.01984 1.70052 1.49040 0.99373 1.40426 0.85762 0.79625 0.78508 0.79511 1.18985 1.20618 1.17171 1.18699 0.93103 0.97365 0.90863 1.21408 1.01558 1.00545 0.92584 1.21225 0.97433 0.98747 0.97253 1.21335 0.97464 0.97278 0.99461 1.21279 0.99980 1.00289 0.91274 1.20234 0.95058 1.00512 0.97133 0.94507 0.90908 0.90625 0.88128 0.93435 0.89527 0.89284 0.96107 0.91051 0.96272 0.95151 0.92403 0.87267 0.85029 0.83480 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.74 71.98 0.63 -2.02 16 2 C -0.05 -1.03 2.86 -11.49 -0.03 -1.06 16 3 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 4 C -0.15 -3.60 5.35 30.74 0.16 -3.43 16 5 C 0.05 1.43 5.81 86.52 0.50 1.94 16 6 N -0.51 -18.45 4.59 -695.76 -3.19 -21.65 16 7 C 0.09 3.85 4.51 86.30 0.39 4.24 16 8 C -0.01 -0.45 2.81 29.85 0.08 -0.37 16 9 C -0.53 -31.77 9.66 25.60 0.25 -31.52 16 10 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 11 C 0.01 0.63 5.47 84.65 0.46 1.10 16 12 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 13 Si 0.94 45.73 27.47 68.60 1.88 47.62 16 14 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 17 C 0.10 3.40 5.06 38.29 0.19 3.60 16 18 C -0.14 -5.23 7.37 22.50 0.17 -5.06 16 19 C -0.13 -3.96 10.04 22.18 0.22 -3.74 16 20 C -0.14 -3.53 10.05 22.24 0.22 -3.31 16 21 C -0.11 -2.76 9.06 22.32 0.20 -2.56 16 22 C -0.13 -3.67 5.41 -19.71 -0.11 -3.78 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 1.16 6.52 -2.38 -0.02 1.14 16 25 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.05 1.38 6.60 -2.39 -0.02 1.37 16 28 H 0.09 2.20 7.88 -2.39 -0.02 2.18 16 29 H 0.09 2.15 8.11 -2.39 -0.02 2.13 16 30 H 0.02 0.92 6.90 -2.39 -0.02 0.90 16 31 H 0.07 2.98 7.90 -2.38 -0.02 2.96 16 32 H 0.02 0.96 7.07 -2.39 -0.02 0.94 16 33 H 0.03 1.51 4.48 -2.39 -0.01 1.50 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.11 4.45 6.17 -2.91 -0.02 4.43 16 36 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.15 2.72 6.50 -2.91 -0.02 2.71 16 Total: -1.00 -69.13 292.08 3.31 -65.81 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.98 Total: 14.55 kcal Atomic # 6 Polarization: -49.33 SS G_CDS: 3.35 Total: -45.98 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.90 Total: -82.00 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.62 kcal Total: -69.13 3.31 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076950445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.406 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds