Wall clock time and date at job start Sun Mar 29 2020 23:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00028 * 2 1 4 4 C 1.50698 * 109.47184 * 284.55510 * 3 2 1 5 5 H 1.08001 * 120.00069 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00008 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00035 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 120.00005 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47130 * 90.00047 * 8 6 4 10 10 H 1.48499 * 109.46899 * 210.00213 * 8 6 4 11 11 H 1.48495 * 109.47031 * 329.99898 * 8 6 4 12 12 C 1.46901 * 111.00110 * 123.95715 * 2 1 3 13 13 H 1.08998 * 109.24973 * 51.00383 * 12 2 1 14 14 C 1.52723 * 109.25233 * 291.56818 * 12 2 1 15 15 C 1.53324 * 108.39182 * 188.62132 * 14 12 2 16 16 C 1.52729 * 108.38547 * 69.86656 * 15 14 12 17 17 C 1.50630 * 110.58521 * 308.88734 * 16 15 14 18 18 C 1.38917 * 117.75202 * 197.44713 * 17 16 15 19 19 C 1.37936 * 120.54445 * 180.56945 * 18 17 16 20 20 C 1.38263 * 119.77010 * 359.97438 * 19 18 17 21 21 C 1.37927 * 119.77478 * 359.88028 * 20 19 18 22 22 C 1.37663 * 122.56488 * 17.79869 * 17 16 15 23 23 H 1.08993 * 109.47563 * 59.99641 * 1 2 3 24 24 H 1.09003 * 109.47108 * 299.99312 * 1 2 3 25 25 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46970 * 44.55124 * 3 2 1 27 27 H 1.08991 * 109.47180 * 164.55031 * 3 2 1 28 28 H 0.97003 * 119.99899 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.68273 * 308.34119 * 14 12 2 30 30 H 1.09003 * 109.68360 * 68.89403 * 14 12 2 31 31 H 1.09008 * 109.68369 * 310.14293 * 15 14 12 32 32 H 1.09002 * 109.68150 * 189.59385 * 15 14 12 33 33 H 1.09003 * 109.25593 * 188.60534 * 16 15 14 34 34 H 1.08992 * 109.25765 * 69.17266 * 16 15 14 35 35 H 1.07994 * 119.72525 * 0.59227 * 18 17 16 36 36 H 1.07995 * 120.11344 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.10973 * 179.85942 * 20 19 18 38 38 H 1.08001 * 119.72856 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8421 1.9684 -1.3752 5 1 1.3984 1.3870 -2.1699 6 6 2.2693 3.2564 -1.6192 7 7 2.1360 3.7772 -2.8195 8 14 3.0375 4.2618 -0.2449 9 1 4.5061 4.0421 -0.2321 10 1 2.7543 5.7024 -0.4677 11 1 2.4626 3.8401 1.0578 12 6 1.9955 -0.7660 1.1375 13 1 1.5197 -1.7464 1.1616 14 6 1.6811 -0.0226 2.4340 15 6 2.4204 -0.7191 3.5826 16 6 3.9168 -0.4612 3.4189 17 6 4.3642 -0.8069 2.0227 18 6 5.7244 -0.9878 1.8055 19 6 6.1986 -1.2943 0.5470 20 6 5.3136 -1.4234 -0.5074 21 6 3.9625 -1.2472 -0.2932 22 6 3.4828 -0.9396 0.9737 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.4420 1.9730 0.7210 27 1 3.0503 1.3557 0.2737 28 1 2.4362 4.6835 -2.9910 29 1 2.0170 1.0114 2.3550 30 1 0.6074 -0.0470 2.6202 31 1 2.2267 -1.7912 3.5472 32 1 2.0804 -0.3154 4.5363 33 1 4.4673 -1.0721 4.1343 34 1 4.1234 0.5914 3.6121 35 1 6.4161 -0.8879 2.6288 36 1 7.2573 -1.4338 0.3861 37 1 5.6792 -1.6610 -1.4955 38 1 3.2719 -1.3486 -1.1173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078316220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:54 Heat of formation + Delta-G solvation = 22.642358 kcal Electronic energy + Delta-G solvation = -18320.151300 eV Core-core repulsion = 15740.879188 eV Total energy + Delta-G solvation = -2579.272111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98899 -36.99735 -34.81803 -32.49463 -31.05305 -29.91443 -28.37108 -27.54935 -24.73137 -22.94064 -22.44992 -21.77982 -20.18626 -18.59544 -16.87860 -16.10606 -15.30395 -15.15240 -14.55084 -14.40897 -13.97561 -13.64750 -13.22545 -13.07034 -12.97779 -12.43563 -12.34255 -12.03682 -11.97747 -11.37466 -11.27309 -11.12334 -10.98439 -10.77195 -10.41989 -10.38671 -10.19279 -9.98856 -9.85270 -9.25736 -8.53004 -8.27962 -8.15786 -7.32034 -6.01553 -3.97265 1.76853 1.85329 3.30667 3.37375 3.39610 4.17353 4.45336 4.72203 4.94176 4.98512 5.14569 5.31062 5.31870 5.39629 5.47888 5.53645 5.68556 5.77375 5.80020 5.92111 6.01128 6.06076 6.08540 6.19025 6.20359 6.32108 6.45571 6.53410 6.55325 6.66143 6.86065 6.91384 6.98312 7.03353 7.14580 7.46907 7.68643 7.92167 8.07106 8.70290 9.08392 9.61482 11.11846 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.009282 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.641811 B = 3015.958793 C = 3359.391155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.523 5.523 3 C 0.163 3.837 4 C -0.502 4.502 5 H 0.080 0.920 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.869 3.131 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.121 3.879 13 H 0.080 0.920 14 C -0.156 4.156 15 C -0.113 4.113 16 C -0.079 4.079 17 C -0.082 4.082 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.076 4.076 22 C -0.062 4.062 23 H 0.077 0.923 24 H 0.015 0.985 25 H 0.049 0.951 26 H -0.010 1.010 27 H 0.025 0.975 28 H 0.262 0.738 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -10.383 11.610 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.245 5.245 3 C 0.037 3.963 4 C -0.541 4.541 5 H 0.098 0.902 6 C -0.132 4.132 7 N -0.541 5.541 8 Si 0.696 3.304 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.013 3.987 13 H 0.098 0.902 14 C -0.195 4.195 15 C -0.151 4.151 16 C -0.115 4.115 17 C -0.082 4.082 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.094 4.094 22 C -0.062 4.062 23 H 0.095 0.905 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.008 0.992 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.469 -10.435 11.048 15.588 hybrid contribution 0.306 1.229 1.322 1.831 sum 3.774 -9.206 12.370 15.875 Atomic orbital electron populations 1.22250 0.88239 0.99756 1.01051 1.62199 1.07008 1.16905 1.38355 1.20184 0.94639 0.83917 0.97560 1.21036 1.39916 0.98186 0.94915 0.90216 1.24862 0.95672 0.97524 0.95161 1.69894 1.48134 1.15630 1.20473 0.86949 0.80320 0.79723 0.83368 1.20163 1.21243 1.19351 1.20521 0.91395 0.97485 0.89347 0.90173 1.22297 1.00138 1.01187 0.95854 1.21478 0.94704 1.00646 0.98270 1.20440 0.96290 1.01462 0.93356 1.19566 0.93125 1.00440 0.95076 1.20962 0.94606 1.02523 0.97131 1.20968 0.99098 1.00984 0.93234 1.21095 0.93762 1.01471 0.98619 1.21293 0.95333 0.95804 0.96982 1.19495 0.94606 0.99111 0.92999 0.90457 0.96671 0.93260 0.99244 0.95715 0.92785 0.90940 0.91728 0.91835 0.91976 0.91272 0.91060 0.86946 0.86806 0.86444 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.08 60.07 0.55 1.20 16 2 N -0.52 -10.75 3.76 -237.95 -0.89 -11.65 16 3 C 0.16 3.97 2.37 -4.98 -0.01 3.96 16 4 C -0.50 -14.35 9.24 -34.44 -0.32 -14.67 16 5 H 0.08 2.47 7.96 -52.49 -0.42 2.06 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 8 Si 0.87 22.09 27.47 -169.99 -4.67 17.43 16 9 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 12 C 0.12 2.10 2.20 -69.04 -0.15 1.95 16 13 H 0.08 1.27 8.02 -51.93 -0.42 0.86 16 14 C -0.16 -2.46 4.58 -26.71 -0.12 -2.59 16 15 C -0.11 -1.45 5.98 -26.70 -0.16 -1.61 16 16 C -0.08 -1.05 5.67 -28.06 -0.16 -1.21 16 17 C -0.08 -1.31 5.74 -104.61 -0.60 -1.91 16 18 C -0.13 -2.00 9.61 -39.44 -0.38 -2.38 16 19 C -0.12 -1.86 10.05 -39.68 -0.40 -2.26 16 20 C -0.13 -2.14 10.05 -39.69 -0.40 -2.54 16 21 C -0.08 -1.38 9.03 -39.44 -0.36 -1.74 16 22 C -0.06 -1.10 4.14 -104.61 -0.43 -1.53 16 23 H 0.08 1.57 7.55 -51.93 -0.39 1.18 16 24 H 0.01 0.26 6.87 -51.93 -0.36 -0.09 16 25 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 26 H -0.01 -0.25 6.12 -51.93 -0.32 -0.57 16 27 H 0.02 0.63 6.19 -51.93 -0.32 0.31 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.07 1.33 6.28 -51.93 -0.33 1.01 16 30 H 0.06 0.95 7.13 -51.93 -0.37 0.58 16 31 H 0.06 0.76 8.10 -51.92 -0.42 0.34 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.11 1.39 8.05 -52.49 -0.42 0.97 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.13 2.58 7.61 -52.49 -0.40 2.18 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -30.82 295.93 -9.23 -40.05 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.86 Total: 0.27 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -3.04 Total: -23.40 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.12 Total: -38.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.82 -9.23 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078316220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.693 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds