Wall clock time and date at job start Sun Mar 29 2020 23:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00028 * 2 1 4 4 C 1.50698 * 109.47184 * 284.55510 * 3 2 1 5 5 H 1.08001 * 120.00069 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00008 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00035 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 120.00005 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47130 * 90.00047 * 8 6 4 10 10 H 1.48499 * 109.46899 * 210.00213 * 8 6 4 11 11 H 1.48495 * 109.47031 * 329.99898 * 8 6 4 12 12 C 1.46901 * 111.00110 * 123.95715 * 2 1 3 13 13 H 1.08998 * 109.24973 * 51.00383 * 12 2 1 14 14 C 1.52723 * 109.25233 * 291.56818 * 12 2 1 15 15 C 1.53324 * 108.39182 * 188.62132 * 14 12 2 16 16 C 1.52729 * 108.38547 * 69.86656 * 15 14 12 17 17 C 1.50630 * 110.58521 * 308.88734 * 16 15 14 18 18 C 1.38917 * 117.75202 * 197.44713 * 17 16 15 19 19 C 1.37936 * 120.54445 * 180.56945 * 18 17 16 20 20 C 1.38263 * 119.77010 * 359.97438 * 19 18 17 21 21 C 1.37927 * 119.77478 * 359.88028 * 20 19 18 22 22 C 1.37663 * 122.56488 * 17.79869 * 17 16 15 23 23 H 1.08993 * 109.47563 * 59.99641 * 1 2 3 24 24 H 1.09003 * 109.47108 * 299.99312 * 1 2 3 25 25 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46970 * 44.55124 * 3 2 1 27 27 H 1.08991 * 109.47180 * 164.55031 * 3 2 1 28 28 H 0.97003 * 119.99899 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.68273 * 308.34119 * 14 12 2 30 30 H 1.09003 * 109.68360 * 68.89403 * 14 12 2 31 31 H 1.09008 * 109.68369 * 310.14293 * 15 14 12 32 32 H 1.09002 * 109.68150 * 189.59385 * 15 14 12 33 33 H 1.09003 * 109.25593 * 188.60534 * 16 15 14 34 34 H 1.08992 * 109.25765 * 69.17266 * 16 15 14 35 35 H 1.07994 * 119.72525 * 0.59227 * 18 17 16 36 36 H 1.07995 * 120.11344 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.10973 * 179.85942 * 20 19 18 38 38 H 1.08001 * 119.72856 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8421 1.9684 -1.3752 5 1 1.3984 1.3870 -2.1699 6 6 2.2693 3.2564 -1.6192 7 7 2.1360 3.7772 -2.8195 8 14 3.0375 4.2618 -0.2449 9 1 4.5061 4.0421 -0.2321 10 1 2.7543 5.7024 -0.4677 11 1 2.4626 3.8401 1.0578 12 6 1.9955 -0.7660 1.1375 13 1 1.5197 -1.7464 1.1616 14 6 1.6811 -0.0226 2.4340 15 6 2.4204 -0.7191 3.5826 16 6 3.9168 -0.4612 3.4189 17 6 4.3642 -0.8069 2.0227 18 6 5.7244 -0.9878 1.8055 19 6 6.1986 -1.2943 0.5470 20 6 5.3136 -1.4234 -0.5074 21 6 3.9625 -1.2472 -0.2932 22 6 3.4828 -0.9396 0.9737 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.4420 1.9730 0.7210 27 1 3.0503 1.3557 0.2737 28 1 2.4362 4.6835 -2.9910 29 1 2.0170 1.0114 2.3550 30 1 0.6074 -0.0470 2.6202 31 1 2.2267 -1.7912 3.5472 32 1 2.0804 -0.3154 4.5363 33 1 4.4673 -1.0721 4.1343 34 1 4.1234 0.5914 3.6121 35 1 6.4161 -0.8879 2.6288 36 1 7.2573 -1.4338 0.3861 37 1 5.6792 -1.6610 -1.4955 38 1 3.2719 -1.3486 -1.1173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078316220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:54 Heat of formation + Delta-G solvation = 4.616077 kcal Electronic energy + Delta-G solvation = -18320.932978 eV Core-core repulsion = 15740.879188 eV Total energy + Delta-G solvation = -2580.053789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25780 -38.41995 -36.10165 -34.62838 -32.42232 -31.09965 -30.17531 -28.96577 -26.28699 -24.55407 -23.62186 -23.16697 -21.63327 -19.93657 -19.01877 -17.41874 -16.71807 -16.48710 -16.18233 -15.85587 -15.42237 -15.21525 -14.67361 -14.51558 -14.37808 -14.15628 -13.64136 -13.37722 -13.26055 -13.06042 -12.82388 -12.59876 -12.32378 -12.15643 -12.11565 -11.89069 -11.75857 -11.52294 -11.46981 -11.10638 -10.79134 -9.52974 -9.38460 -8.92606 -8.29674 -6.30510 0.54282 0.61145 1.28568 1.29365 1.39544 2.30670 2.92361 3.03852 3.28594 3.76304 3.86130 4.00601 4.15990 4.25543 4.30585 4.38219 4.48871 4.51353 4.61327 4.62671 4.74158 4.82306 4.85177 4.93646 5.02506 5.04064 5.08920 5.16494 5.19860 5.28092 5.35704 5.41784 5.57325 5.68689 5.74825 5.83282 6.04161 6.24481 6.43541 6.66654 6.75546 7.32479 8.87303 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.009282 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.641811 B = 3015.958793 C = 3359.391155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.540 5.540 3 C 0.187 3.813 4 C -0.507 4.507 5 H 0.037 0.963 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.936 3.064 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.253 1.253 12 C 0.122 3.878 13 H 0.096 0.904 14 C -0.152 4.152 15 C -0.106 4.106 16 C -0.079 4.079 17 C -0.090 4.090 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.104 4.104 22 C -0.084 4.084 23 H 0.047 0.953 24 H 0.026 0.974 25 H 0.080 0.920 26 H -0.014 1.014 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 -10.957 14.985 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.263 5.263 3 C 0.060 3.940 4 C -0.546 4.546 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.588 5.588 8 Si 0.760 3.240 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.177 1.177 12 C 0.014 3.986 13 H 0.113 0.887 14 C -0.192 4.192 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.091 4.091 18 C -0.153 4.153 19 C -0.143 4.143 20 C -0.164 4.164 21 C -0.123 4.123 22 C -0.084 4.084 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.099 0.901 26 H 0.004 0.996 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.721 -11.033 14.436 18.773 hybrid contribution -0.096 1.301 0.182 1.318 sum 4.625 -9.732 14.618 18.160 Atomic orbital electron populations 1.22222 0.87147 1.01510 1.00067 1.62028 1.08144 1.14885 1.41213 1.19748 0.94082 0.85837 0.94379 1.21289 1.39036 0.98142 0.96090 0.94457 1.25737 0.96310 0.98861 0.97728 1.70043 1.49675 1.16296 1.22831 0.85875 0.79405 0.78142 0.80583 1.19596 1.20340 1.17692 1.20607 0.91528 0.97635 0.88840 0.88669 1.22238 1.01151 0.99555 0.96212 1.21469 0.93964 1.01138 0.97806 1.20531 0.96958 1.01874 0.92198 1.19960 0.93497 0.99620 0.95992 1.21396 0.94756 1.01094 0.98025 1.21344 1.00355 0.99778 0.92838 1.21318 0.93384 1.01719 0.99941 1.21259 0.96030 0.98027 0.96967 1.19651 0.95100 1.00286 0.93406 0.93435 0.95563 0.90126 0.99619 0.96630 0.92543 0.93675 0.90774 0.90573 0.89648 0.88280 0.91242 0.83746 0.83850 0.85490 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.08 127.69 1.16 2.59 16 2 N -0.54 -22.55 3.76 -906.73 -3.41 -25.96 16 3 C 0.19 9.21 2.37 85.56 0.20 9.42 16 4 C -0.51 -30.16 9.24 25.60 0.24 -29.92 16 5 H 0.04 2.47 7.96 -2.91 -0.02 2.44 16 6 C 0.01 0.64 5.47 84.65 0.46 1.11 16 7 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 8 Si 0.94 45.85 27.47 68.60 1.88 47.73 16 9 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 12 C 0.12 4.11 2.20 44.06 0.10 4.20 16 13 H 0.10 2.88 8.02 -2.39 -0.02 2.86 16 14 C -0.15 -4.49 4.58 30.61 0.14 -4.35 16 15 C -0.11 -2.31 5.98 30.61 0.18 -2.13 16 16 C -0.08 -1.80 5.67 29.74 0.17 -1.63 16 17 C -0.09 -2.66 5.74 -19.86 -0.11 -2.78 16 18 C -0.13 -3.58 9.61 22.36 0.21 -3.37 16 19 C -0.13 -3.44 10.05 22.20 0.22 -3.22 16 20 C -0.15 -4.71 10.05 22.20 0.22 -4.49 16 21 C -0.10 -3.88 9.03 22.36 0.20 -3.68 16 22 C -0.08 -2.92 4.14 -19.86 -0.08 -3.00 16 23 H 0.05 2.01 7.55 -2.39 -0.02 1.99 16 24 H 0.03 0.90 6.87 -2.39 -0.02 0.88 16 25 H 0.08 2.44 8.06 -2.39 -0.02 2.42 16 26 H -0.01 -0.69 6.12 -2.39 -0.01 -0.70 16 27 H 0.02 0.80 6.19 -2.39 -0.01 0.79 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.04 1.58 6.28 -2.39 -0.01 1.56 16 30 H 0.07 2.00 7.13 -2.39 -0.02 1.98 16 31 H 0.08 1.50 8.10 -2.38 -0.02 1.48 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.69 8.13 -2.39 -0.02 1.67 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.14 2.86 8.05 -2.91 -0.02 2.84 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.11 4.46 7.61 -2.91 -0.02 4.44 16 Total: -1.00 -69.01 295.93 3.06 -65.96 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.97 Total: 13.77 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 3.32 Total: -41.24 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.11 Total: -86.22 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -69.01 3.06 -65.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078316220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.573 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds