Wall clock time and date at job start Sun Mar 29 2020 22:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.01888 * 2 1 4 4 C 1.54270 * 110.03162 * 121.44143 * 2 1 3 5 5 C 1.54890 * 104.19277 * 142.89394 * 4 2 1 6 6 C 1.54887 * 102.75367 * 322.06151 * 5 4 2 7 7 C 1.53877 * 110.03303 * 238.61205 * 2 1 3 8 8 H 1.08999 * 110.03523 * 121.38625 * 7 2 1 9 9 N 1.46492 * 110.03125 * 359.97438 * 7 2 1 10 10 C 1.38864 * 119.99793 * 155.00555 * 9 7 2 11 11 C 1.39565 * 119.84086 * 180.02562 * 10 9 7 12 12 C 1.36341 * 120.15985 * 180.02562 * 11 10 9 13 13 C 1.40888 * 119.83697 * 359.97438 * 12 11 10 14 14 C 1.41130 * 120.15645 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00054 * 334.77099 * 14 13 12 16 16 C 1.39868 * 120.00204 * 154.76763 * 14 13 12 17 17 N 1.30904 * 119.99642 * 334.23738 * 16 14 13 18 18 Si 1.86796 * 120.00006 * 154.23615 * 16 14 13 19 19 H 1.48503 * 109.47043 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47506 * 300.00344 * 18 16 14 21 21 H 1.48503 * 109.47107 * 60.00391 * 18 16 14 22 22 C 1.40885 * 119.68588 * 0.27755 * 13 12 11 23 23 C 1.36338 * 119.83771 * 359.45851 * 22 13 12 24 24 H 1.08992 * 109.46931 * 181.38470 * 1 2 3 25 25 H 1.09003 * 109.47320 * 301.39315 * 1 2 3 26 26 H 1.09001 * 109.46626 * 61.38772 * 1 2 3 27 27 H 1.09000 * 110.48959 * 261.57209 * 4 2 1 28 28 H 1.08998 * 110.48486 * 24.22155 * 4 2 1 29 29 H 1.08998 * 110.75659 * 80.37745 * 5 4 2 30 30 H 1.09002 * 110.75692 * 203.74115 * 5 4 2 31 31 H 1.09003 * 110.48458 * 279.26672 * 6 5 4 32 32 H 1.08994 * 110.48706 * 156.62374 * 6 5 4 33 33 H 0.96997 * 120.00515 * 334.99842 * 9 7 2 34 34 H 1.07998 * 119.92119 * 0.02562 * 11 10 9 35 35 H 1.07999 * 120.08314 * 179.97438 * 12 11 10 36 36 H 0.96995 * 120.00127 * 354.25292 * 17 16 14 37 37 H 1.08005 * 120.07807 * 179.73098 * 22 13 12 38 38 H 1.07997 * 119.91833 * 180.28182 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3136 -1.5011 0.7184 6 6 2.8875 -1.9403 -0.7044 7 6 2.0571 -0.7529 -1.2341 8 1 2.6861 -0.0943 -1.8329 9 7 0.9360 -1.2446 -2.0387 10 6 1.1060 -1.4781 -3.3970 11 6 0.0355 -1.9460 -4.1605 12 6 0.1953 -2.1780 -5.4945 13 6 1.4447 -1.9438 -6.1019 14 6 1.6178 -2.1823 -7.4822 15 1 0.9851 -2.8947 -7.9907 16 6 2.6087 -1.4959 -8.1916 17 7 3.0236 -0.3274 -7.7719 18 14 3.3400 -2.2466 -9.7378 19 1 4.3632 -1.3276 -10.2981 20 1 3.9735 -3.5477 -9.4046 21 1 2.2653 -2.4615 -10.7398 22 6 2.5223 -1.4766 -5.3238 23 6 2.3465 -1.2438 -3.9920 24 1 -0.3633 -1.0273 0.0248 25 1 -0.3634 0.5353 0.8772 26 1 -0.3632 0.4921 -0.9022 27 1 2.3297 -0.0546 2.0255 28 1 1.3142 -1.4667 1.5959 29 1 4.1710 -0.8294 0.6748 30 1 3.5325 -2.3685 1.3412 31 1 2.2772 -2.8422 -0.6585 32 1 3.7638 -2.1031 -1.3318 33 1 0.0749 -1.4070 -1.6227 34 1 -0.9218 -2.1247 -3.6936 35 1 -0.6338 -2.5405 -6.0841 36 1 2.5873 0.1003 -7.0185 37 1 3.4840 -1.2991 -5.7821 38 1 3.1703 -0.8813 -3.3952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083390433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:17 Heat of formation + Delta-G solvation = -9.145215 kcal Electronic energy + Delta-G solvation = -17491.674480 eV Core-core repulsion = 14911.023956 eV Total energy + Delta-G solvation = -2580.650524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57079 -39.15078 -36.20659 -34.20513 -32.29170 -31.45319 -30.36609 -28.12473 -26.07361 -25.85547 -23.08373 -22.40653 -21.57492 -19.93173 -19.69724 -18.29885 -16.88899 -16.30678 -16.24436 -15.72072 -15.28132 -15.13137 -14.61406 -14.42553 -14.05241 -13.82497 -13.69027 -13.48361 -13.15822 -12.84548 -12.64219 -12.45975 -11.95676 -11.91065 -11.89171 -11.64136 -11.54272 -11.47720 -11.40559 -11.22756 -10.86002 -10.37632 -9.63319 -9.06840 -8.28086 -6.10070 0.96366 1.08505 1.51654 1.67922 1.81113 2.40035 2.77996 2.88163 3.60578 3.64011 3.76963 3.94572 4.28196 4.33843 4.36999 4.47294 4.56581 4.59050 4.62692 4.77318 4.83488 4.91293 4.96976 5.03778 5.06912 5.16924 5.21066 5.26578 5.31903 5.38547 5.49080 5.51121 5.61289 5.74490 5.89791 5.93354 6.31555 6.39829 6.73188 6.98077 7.10282 7.26606 8.19174 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.041467 B = 0.004980 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.078793 B = 5621.359777 C = 5936.894271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.139 4.139 7 C 0.152 3.848 8 H 0.054 0.946 9 N -0.742 5.742 10 C 0.110 3.890 11 C -0.156 4.156 12 C -0.197 4.197 13 C 0.027 3.973 14 C -0.574 4.574 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.837 5.837 18 Si 1.115 2.885 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.192 4.192 23 C -0.158 4.158 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.398 0.602 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.278 0.722 37 H 0.083 0.917 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -0.143 15.771 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.178 4.178 7 C 0.045 3.955 8 H 0.072 0.928 9 N -0.379 5.379 10 C 0.010 3.990 11 C -0.178 4.178 12 C -0.217 4.217 13 C 0.024 3.976 14 C -0.604 4.604 15 H 0.080 0.920 16 C -0.212 4.212 17 N -0.463 5.463 18 Si 0.933 3.067 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.212 4.212 23 C -0.180 4.180 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.237 0.763 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.014 0.213 14.671 14.672 hybrid contribution -1.437 -0.230 0.890 1.706 sum -1.451 -0.017 15.560 15.628 Atomic orbital electron populations 1.21747 0.94480 1.01776 1.01979 1.21981 0.96685 0.99455 0.93775 0.90260 1.22410 0.97017 0.99016 0.96379 1.22445 0.98140 1.00445 0.94624 1.22871 0.99155 0.98511 0.97306 1.21465 0.87967 0.94404 0.91641 0.92781 1.44358 1.13498 1.76061 1.03989 1.17447 0.93568 1.02593 0.85351 1.20170 0.97676 1.06094 0.93831 1.20726 0.96079 1.09659 0.95227 1.17857 0.91603 0.94030 0.94079 1.20480 1.19946 1.25047 0.94945 0.91979 1.28257 0.93694 0.93458 1.05820 1.70604 1.38668 1.12734 1.24266 0.83043 0.76808 0.75858 0.71036 1.19723 1.19167 1.18428 1.20695 0.97506 1.08967 0.93992 1.20173 0.96403 1.06848 0.94591 0.92302 0.90863 0.93438 0.89930 0.90983 0.91031 0.90513 0.92143 0.93385 0.76331 0.86219 0.88591 0.91051 0.89837 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 7.73 71.98 0.56 -2.18 16 2 C -0.10 -2.07 3.50 -10.07 -0.04 -2.11 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.11 -1.84 6.36 31.67 0.20 -1.64 16 5 C -0.12 -2.24 6.91 31.88 0.22 -2.02 16 6 C -0.14 -3.64 6.53 31.67 0.21 -3.43 16 7 C 0.15 4.26 2.90 45.72 0.13 4.39 16 8 H 0.05 1.74 6.40 -2.39 -0.02 1.73 16 9 N -0.74 -24.11 4.61 -315.12 -1.45 -25.56 16 10 C 0.11 4.67 6.67 38.67 0.26 4.93 16 11 C -0.16 -6.85 9.82 22.15 0.22 -6.63 16 12 C -0.20 -10.03 9.74 22.48 0.22 -9.81 16 13 C 0.03 1.56 5.30 -21.27 -0.11 1.45 16 14 C -0.57 -33.22 8.96 23.37 0.21 -33.01 16 15 H 0.06 3.52 7.96 -2.91 -0.02 3.50 16 16 C 0.00 0.04 4.92 85.23 0.42 0.46 16 17 N -0.84 -48.46 12.32 21.82 0.27 -48.20 16 18 Si 1.11 46.44 30.00 68.60 2.06 48.50 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 C -0.19 -10.46 7.90 22.47 0.18 -10.29 16 23 C -0.16 -7.46 9.13 22.15 0.20 -7.26 16 24 H 0.06 1.09 6.90 -2.39 -0.02 1.07 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.07 7.72 -2.39 -0.02 1.05 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.68 8.05 -2.39 -0.02 1.66 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.40 11.28 5.82 -92.71 -0.54 10.74 16 34 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.28 16.74 6.71 -92.71 -0.62 16.12 16 37 H 0.08 4.83 6.50 -2.91 -0.02 4.81 16 38 H 0.11 4.57 6.19 -2.91 -0.02 4.55 16 Total: -1.00 -63.21 299.69 4.39 -58.81 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.65 Total: 33.60 kcal Atomic # 6 Polarization: -70.02 SS G_CDS: 2.87 Total: -67.15 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.18 Total: -73.76 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.06 Total: 48.50 kcal Total: -63.21 4.39 -58.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083390433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.669 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds