Wall clock time and date at job start Sun Mar 29 2020 22:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47360 * 2 1 4 4 N 1.46895 * 109.46685 * 119.99867 * 2 1 3 5 5 C 1.46904 * 111.00072 * 276.63476 * 4 2 1 6 6 C 1.53002 * 109.47131 * 185.09225 * 5 4 2 7 7 C 1.50698 * 115.54825 * 39.69359 * 6 5 4 8 8 H 1.08001 * 120.00601 * 269.56127 * 7 6 5 9 9 C 1.37883 * 119.99769 * 89.57377 * 7 6 5 10 10 N 1.31512 * 120.00119 * 180.15585 * 9 7 6 11 11 Si 1.86802 * 119.99838 * 0.14815 * 9 7 6 12 12 H 1.48499 * 109.46957 * 87.48100 * 11 9 7 13 13 H 1.48498 * 109.46969 * 207.47725 * 11 9 7 14 14 H 1.48498 * 109.47342 * 327.47879 * 11 9 7 15 15 C 1.53001 * 117.49593 * 253.98908 * 6 5 4 16 16 C 1.52998 * 59.99949 * 252.51111 * 15 6 5 17 17 C 1.50700 * 109.46847 * 239.99741 * 2 1 3 18 18 C 1.38237 * 119.99698 * 286.58406 * 17 2 1 19 19 C 1.38244 * 119.99550 * 179.81604 * 18 17 2 20 20 C 1.38239 * 119.99886 * 0.39167 * 19 18 17 21 21 C 1.38231 * 120.00107 * 359.86403 * 20 19 18 22 22 C 1.38228 * 119.99951 * 106.85975 * 17 2 1 23 23 H 1.09008 * 109.46677 * 60.00160 * 1 2 3 24 24 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47027 * 300.00429 * 1 2 3 26 26 H 1.00903 * 111.00308 * 40.59455 * 4 2 1 27 27 H 1.08997 * 109.47349 * 305.09369 * 5 4 2 28 28 H 1.08998 * 109.46716 * 65.09782 * 5 4 2 29 29 H 0.96997 * 120.00041 * 179.97438 * 10 9 7 30 30 H 1.08992 * 117.50554 * 359.97438 * 15 6 5 31 31 H 1.09007 * 117.49855 * 145.02432 * 15 6 5 32 32 H 1.09006 * 117.50377 * 252.51482 * 16 15 6 33 33 H 1.08995 * 117.51825 * 107.47964 * 16 15 6 34 34 H 1.07994 * 120.00814 * 359.97438 * 18 17 2 35 35 H 1.07997 * 119.99660 * 180.22836 * 19 18 17 36 36 H 1.08001 * 119.99548 * 179.83626 * 20 19 18 37 37 H 1.08001 * 119.99927 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.00447 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0457 0.2127 2.3562 6 6 2.6778 -0.5044 3.5508 7 6 3.8624 -1.3792 3.2312 8 1 3.7147 -2.4216 2.9903 9 6 5.1351 -0.8490 3.2467 10 7 6.1687 -1.6117 2.9648 11 14 5.3911 0.9529 3.6678 12 1 5.5208 1.1036 5.1394 13 1 6.6279 1.4442 3.0090 14 1 4.2282 1.7430 3.1898 15 6 1.7456 -0.9597 4.6754 16 6 2.6831 0.2296 4.8933 17 6 2.0324 -0.7105 -1.2304 18 6 1.9405 -2.0869 -1.3196 19 6 2.3978 -2.7383 -2.4500 20 6 2.9543 -2.0139 -3.4876 21 6 3.0509 -0.6380 -3.3961 22 6 2.5900 0.0137 -2.2674 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.4658 -1.5130 1.3947 27 1 2.6327 1.0980 2.1117 28 1 1.0276 0.5099 2.6079 29 1 7.0640 -1.2385 2.9753 30 1 0.6822 -0.7481 4.5644 31 1 1.9891 -1.8924 5.1844 32 1 3.5435 0.0794 5.5455 33 1 2.2368 1.2234 4.9252 34 1 1.5093 -2.6532 -0.5075 35 1 2.3227 -3.8133 -2.5212 36 1 3.3139 -2.5231 -4.3695 37 1 3.4860 -0.0722 -4.2066 38 1 2.6655 1.0886 -2.1960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:30 Heat of formation + Delta-G solvation = 51.509900 kcal Electronic energy + Delta-G solvation = -17638.930892 eV Core-core repulsion = 15060.910571 eV Total energy + Delta-G solvation = -2578.020321 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.17912 -37.36995 -35.43356 -31.88096 -31.02834 -30.55088 -28.62566 -25.75636 -24.54675 -23.06049 -22.07060 -21.61642 -20.06144 -18.88933 -16.76452 -16.11143 -15.22854 -14.95452 -14.82461 -14.23343 -13.79087 -13.74579 -13.41005 -13.03964 -12.77243 -12.60060 -12.33383 -12.22326 -11.94299 -11.59228 -11.22368 -11.02815 -10.67803 -10.54764 -10.44209 -10.33568 -9.98371 -9.47676 -8.98825 -8.58831 -8.42225 -8.37614 -8.33465 -7.53379 -5.91112 -3.89047 1.69202 1.74031 3.39007 3.48024 3.51117 4.09264 4.57844 4.69336 4.99989 5.09798 5.17330 5.25862 5.36889 5.39440 5.46745 5.49896 5.72935 5.82626 5.86963 5.94619 5.99167 6.10051 6.16764 6.24006 6.27236 6.32486 6.39842 6.48222 6.56525 6.75611 6.76715 6.81571 6.97598 7.10128 7.18343 7.32446 7.81011 7.94174 8.15927 8.69137 9.12214 9.73153 11.21982 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.007324 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.707030 B = 3821.979949 C = 4351.548373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.117 3.883 3 H 0.079 0.921 4 N -0.647 5.647 5 C 0.099 3.901 6 C 0.005 3.995 7 C -0.452 4.452 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.904 5.904 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.299 1.299 14 H -0.264 1.264 15 C -0.186 4.186 16 C -0.205 4.205 17 C -0.054 4.054 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.118 4.118 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.337 0.663 27 H 0.062 0.938 28 H 0.004 0.996 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 2.969 -8.962 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 H 0.097 0.903 4 N -0.276 5.276 5 C -0.030 4.030 6 C 0.004 3.996 7 C -0.490 4.490 8 H 0.094 0.906 9 C -0.124 4.124 10 N -0.542 5.542 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.227 1.227 14 H -0.189 1.189 15 C -0.224 4.224 16 C -0.243 4.243 17 C -0.054 4.054 18 C -0.111 4.111 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.081 0.919 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.577 3.064 -9.119 13.575 hybrid contribution -0.547 1.115 0.496 1.338 sum -10.124 4.180 -8.623 13.940 Atomic orbital electron populations 1.22528 0.97289 1.02078 1.01692 1.20511 0.91771 0.97453 0.89624 0.90266 1.60274 1.57188 1.08026 1.02116 1.21683 0.95599 0.94954 0.90809 1.19513 0.97412 0.97597 0.85070 1.20007 0.87250 0.96220 1.45494 0.90564 1.24880 0.95931 0.96949 0.94679 1.69884 0.98636 1.35774 1.49944 0.86868 0.77080 0.86895 0.77955 1.21021 1.22665 1.18895 1.22895 0.94297 0.98132 1.07050 1.22946 1.02244 0.94869 1.04192 1.19810 0.97245 0.93943 0.94429 1.20915 0.99218 0.93997 0.96983 1.21103 0.99239 0.99571 0.94077 1.21031 1.00649 0.94263 0.98943 1.21008 1.00572 0.94671 0.97992 1.20971 0.99267 0.99561 0.93878 0.92531 0.92396 0.92564 0.84390 0.91934 0.97754 0.92989 0.91421 0.89637 0.89404 0.91256 0.86194 0.86492 0.86744 0.86666 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.09 37.16 0.34 -1.96 16 2 C 0.12 1.86 2.78 -68.86 -0.19 1.67 16 3 H 0.08 1.28 7.54 -51.93 -0.39 0.89 16 4 N -0.65 -12.39 5.17 -107.95 -0.56 -12.94 16 5 C 0.10 2.00 5.46 -3.82 -0.02 1.98 16 6 C 0.01 0.12 1.22 -155.66 -0.19 -0.07 16 7 C -0.45 -12.52 8.77 -34.44 -0.30 -12.82 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 9 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 10 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 11 Si 0.88 22.44 24.85 -169.99 -4.22 18.22 16 12 H -0.28 -7.07 7.00 56.52 0.40 -6.67 16 13 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 14 H -0.26 -6.36 5.67 56.52 0.32 -6.04 16 15 C -0.19 -3.75 9.88 -26.73 -0.26 -4.02 16 16 C -0.20 -4.39 7.51 -26.73 -0.20 -4.59 16 17 C -0.05 -0.86 4.95 -104.63 -0.52 -1.38 16 18 C -0.09 -1.46 9.21 -39.58 -0.36 -1.82 16 19 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 20 C -0.13 -1.77 10.05 -39.58 -0.40 -2.16 16 21 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.12 -1.76 9.67 -39.58 -0.38 -2.15 16 23 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 24 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 25 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 26 H 0.34 6.14 7.94 -39.29 -0.31 5.83 16 27 H 0.06 1.35 6.49 -51.93 -0.34 1.01 16 28 H 0.00 0.08 7.27 -51.93 -0.38 -0.30 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 30 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.09 2.00 6.83 -51.93 -0.35 1.65 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.12 1.81 7.43 -52.49 -0.39 1.42 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.53 7.99 -52.49 -0.42 1.11 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -30.73 307.92 -8.74 -39.47 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.99 Total: 7.41 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -3.39 Total: -29.43 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.22 Total: -40.30 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.22 Total: 18.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.73 -8.74 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.981 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds