Wall clock time and date at job start Sun Mar 29 2020 22:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47360 * 2 1 4 4 N 1.46895 * 109.46685 * 119.99867 * 2 1 3 5 5 C 1.46904 * 111.00072 * 276.63476 * 4 2 1 6 6 C 1.53002 * 109.47131 * 185.09225 * 5 4 2 7 7 C 1.50698 * 115.54825 * 39.69359 * 6 5 4 8 8 H 1.08001 * 120.00601 * 269.56127 * 7 6 5 9 9 C 1.37883 * 119.99769 * 89.57377 * 7 6 5 10 10 N 1.31512 * 120.00119 * 180.15585 * 9 7 6 11 11 Si 1.86802 * 119.99838 * 0.14815 * 9 7 6 12 12 H 1.48499 * 109.46957 * 87.48100 * 11 9 7 13 13 H 1.48498 * 109.46969 * 207.47725 * 11 9 7 14 14 H 1.48498 * 109.47342 * 327.47879 * 11 9 7 15 15 C 1.53001 * 117.49593 * 253.98908 * 6 5 4 16 16 C 1.52998 * 59.99949 * 252.51111 * 15 6 5 17 17 C 1.50700 * 109.46847 * 239.99741 * 2 1 3 18 18 C 1.38237 * 119.99698 * 286.58406 * 17 2 1 19 19 C 1.38244 * 119.99550 * 179.81604 * 18 17 2 20 20 C 1.38239 * 119.99886 * 0.39167 * 19 18 17 21 21 C 1.38231 * 120.00107 * 359.86403 * 20 19 18 22 22 C 1.38228 * 119.99951 * 106.85975 * 17 2 1 23 23 H 1.09008 * 109.46677 * 60.00160 * 1 2 3 24 24 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47027 * 300.00429 * 1 2 3 26 26 H 1.00903 * 111.00308 * 40.59455 * 4 2 1 27 27 H 1.08997 * 109.47349 * 305.09369 * 5 4 2 28 28 H 1.08998 * 109.46716 * 65.09782 * 5 4 2 29 29 H 0.96997 * 120.00041 * 179.97438 * 10 9 7 30 30 H 1.08992 * 117.50554 * 359.97438 * 15 6 5 31 31 H 1.09007 * 117.49855 * 145.02432 * 15 6 5 32 32 H 1.09006 * 117.50377 * 252.51482 * 16 15 6 33 33 H 1.08995 * 117.51825 * 107.47964 * 16 15 6 34 34 H 1.07994 * 120.00814 * 359.97438 * 18 17 2 35 35 H 1.07997 * 119.99660 * 180.22836 * 19 18 17 36 36 H 1.08001 * 119.99548 * 179.83626 * 20 19 18 37 37 H 1.08001 * 119.99927 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.00447 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0457 0.2127 2.3562 6 6 2.6778 -0.5044 3.5508 7 6 3.8624 -1.3792 3.2312 8 1 3.7147 -2.4216 2.9903 9 6 5.1351 -0.8490 3.2467 10 7 6.1687 -1.6117 2.9648 11 14 5.3911 0.9529 3.6678 12 1 5.5208 1.1036 5.1394 13 1 6.6279 1.4442 3.0090 14 1 4.2282 1.7430 3.1898 15 6 1.7456 -0.9597 4.6754 16 6 2.6831 0.2296 4.8933 17 6 2.0324 -0.7105 -1.2304 18 6 1.9405 -2.0869 -1.3196 19 6 2.3978 -2.7383 -2.4500 20 6 2.9543 -2.0139 -3.4876 21 6 3.0509 -0.6380 -3.3961 22 6 2.5900 0.0137 -2.2674 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.4658 -1.5130 1.3947 27 1 2.6327 1.0980 2.1117 28 1 1.0276 0.5099 2.6079 29 1 7.0640 -1.2385 2.9753 30 1 0.6822 -0.7481 4.5644 31 1 1.9891 -1.8924 5.1844 32 1 3.5435 0.0794 5.5455 33 1 2.2368 1.2234 4.9252 34 1 1.5093 -2.6532 -0.5075 35 1 2.3227 -3.8133 -2.5212 36 1 3.3139 -2.5231 -4.3695 37 1 3.4860 -0.0722 -4.2066 38 1 2.6655 1.0886 -2.1960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:30 Heat of formation + Delta-G solvation = 33.166530 kcal Electronic energy + Delta-G solvation = -17639.726320 eV Core-core repulsion = 15060.910571 eV Total energy + Delta-G solvation = -2578.815749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33632 -38.97759 -36.79989 -34.07098 -32.31191 -31.66152 -29.76624 -27.73129 -26.12213 -24.26900 -23.29033 -23.19986 -21.27638 -20.72976 -18.31978 -17.67407 -16.91034 -16.26944 -16.18499 -15.68936 -15.29734 -15.05929 -14.76413 -14.62483 -14.12895 -14.01563 -13.88357 -13.69674 -13.10150 -13.00673 -12.82510 -12.35643 -12.32124 -12.11087 -11.96914 -11.73836 -11.63005 -11.37398 -10.86451 -10.50131 -10.17413 -9.70699 -9.51651 -8.93090 -8.14618 -6.14868 0.57115 0.61973 1.37100 1.40116 1.50924 2.45825 2.94295 3.18148 3.22069 3.54491 3.91010 4.05807 4.20069 4.25455 4.35174 4.35734 4.39698 4.41875 4.50043 4.63796 4.68763 4.75486 4.84984 4.87801 4.96621 4.97813 5.12546 5.18849 5.22694 5.29677 5.40313 5.53330 5.66828 5.71043 5.81336 5.84529 6.22789 6.38248 6.53062 6.73499 6.90010 7.50449 9.02363 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.007324 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.707030 B = 3821.979949 C = 4351.548373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 H 0.075 0.925 4 N -0.672 5.672 5 C 0.109 3.891 6 C -0.024 4.024 7 C -0.438 4.438 8 H 0.030 0.970 9 C 0.014 3.986 10 N -0.959 5.959 11 Si 0.939 3.061 12 H -0.274 1.274 13 H -0.310 1.310 14 H -0.238 1.238 15 C -0.165 4.165 16 C -0.202 4.202 17 C -0.074 4.074 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.134 4.134 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.339 0.661 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.258 0.742 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 4.781 -9.418 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 H 0.093 0.907 4 N -0.303 5.303 5 C -0.020 4.020 6 C -0.026 4.026 7 C -0.476 4.476 8 H 0.048 0.952 9 C -0.181 4.181 10 N -0.601 5.601 11 Si 0.767 3.233 12 H -0.200 1.200 13 H -0.238 1.238 14 H -0.161 1.161 15 C -0.202 4.202 16 C -0.240 4.240 17 C -0.075 4.075 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.146 4.146 22 C -0.152 4.152 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.511 4.886 -9.571 15.747 hybrid contribution 0.014 0.413 0.590 0.721 sum -11.497 5.299 -8.981 15.521 Atomic orbital electron populations 1.22393 0.94860 1.02541 1.02621 1.20516 0.93690 0.96660 0.88192 0.90676 1.60180 1.58613 1.08555 1.02909 1.21474 0.96653 0.94026 0.89828 1.19484 0.97156 0.98852 0.87067 1.20153 0.89201 0.94951 1.43282 0.95224 1.25689 0.95770 1.01305 0.95303 1.70054 0.99091 1.37923 1.52999 0.85929 0.77305 0.82040 0.78067 1.20003 1.23779 1.16128 1.22918 0.95872 0.97308 1.04100 1.22980 1.02206 0.96788 1.01993 1.19977 0.98214 0.94249 0.95016 1.21044 1.00320 0.94286 0.97646 1.21407 0.99061 1.00680 0.93976 1.21411 0.99850 0.94499 0.99528 1.21386 0.99829 0.95087 0.98281 1.21251 0.99376 1.00420 0.94181 0.91139 0.92180 0.91957 0.84232 0.93310 0.94604 0.93373 0.87713 0.90743 0.91246 0.88193 0.86692 0.84872 0.84058 0.84033 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 9.09 71.99 0.65 -3.27 16 2 C 0.12 3.65 2.78 44.17 0.12 3.78 16 3 H 0.08 2.32 7.54 -2.39 -0.02 2.31 16 4 N -0.67 -25.28 5.17 -495.45 -2.56 -27.84 16 5 C 0.11 4.18 5.46 86.30 0.47 4.65 16 6 C -0.02 -1.08 1.22 -52.93 -0.06 -1.14 16 7 C -0.44 -24.76 8.77 25.60 0.22 -24.53 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.01 0.85 5.47 84.66 0.46 1.32 16 10 N -0.96 -62.07 13.96 21.45 0.30 -61.77 16 11 Si 0.94 46.32 24.85 68.60 1.70 48.03 16 12 H -0.27 -12.98 7.00 99.48 0.70 -12.28 16 13 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 14 H -0.24 -10.62 5.67 99.48 0.56 -10.06 16 15 C -0.16 -6.18 9.88 30.59 0.30 -5.88 16 16 C -0.20 -8.05 7.51 30.59 0.23 -7.82 16 17 C -0.07 -2.33 4.95 -19.87 -0.10 -2.43 16 18 C -0.11 -3.61 9.21 22.27 0.21 -3.41 16 19 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 20 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 21 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 22 C -0.13 -3.84 9.67 22.27 0.22 -3.62 16 23 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.06 1.39 8.05 -2.39 -0.02 1.37 16 25 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 26 H 0.34 12.24 7.94 -89.69 -0.71 11.53 16 27 H 0.05 1.98 6.49 -2.39 -0.02 1.96 16 28 H 0.04 1.15 7.27 -2.39 -0.02 1.13 16 29 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.10 3.19 8.08 -2.39 -0.02 3.17 16 31 H 0.07 2.94 8.14 -2.38 -0.02 2.93 16 32 H 0.07 3.03 6.83 -2.38 -0.02 3.01 16 33 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.12 3.58 7.43 -2.91 -0.02 3.56 16 35 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.13 3.21 7.99 -2.91 -0.02 3.19 16 Total: -1.00 -68.07 307.92 3.00 -65.07 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.16 Total: 28.62 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 3.40 Total: -52.11 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -2.26 Total: -89.61 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.70 Total: 48.03 kcal Total: -68.07 3.00 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.233 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds