Wall clock time and date at job start Sun Mar 29 2020 23:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00046 * 2 1 4 4 C 1.50709 * 109.46978 * 293.95221 * 3 2 1 5 5 H 1.07994 * 119.99731 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99970 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00022 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47318 * 89.99619 * 8 6 4 10 10 H 1.48502 * 109.47076 * 209.99819 * 8 6 4 11 11 H 1.48504 * 109.46900 * 329.99367 * 8 6 4 12 12 C 1.46904 * 110.99907 * 123.95097 * 2 1 3 13 13 H 1.09003 * 109.70711 * 186.58014 * 12 2 1 14 14 C 1.53331 * 109.68145 * 66.04969 * 12 2 1 15 15 C 1.52732 * 108.38314 * 170.39465 * 14 12 2 16 16 C 1.50636 * 110.58993 * 51.08646 * 15 14 12 17 17 C 1.38911 * 117.74750 * 162.51431 * 16 15 14 18 18 C 1.37930 * 120.54354 * 179.71484 * 17 16 15 19 19 C 1.38265 * 119.77262 * 359.91034 * 18 17 16 20 20 C 1.37944 * 119.77065 * 0.10185 * 19 18 17 21 21 C 1.37663 * 122.56224 * 342.29426 * 16 15 14 22 22 C 1.50629 * 122.56951 * 0.62056 * 21 16 15 23 23 H 1.08998 * 109.47147 * 296.04586 * 1 2 3 24 24 H 1.09000 * 109.46725 * 56.05018 * 1 2 3 25 25 H 1.09003 * 109.46811 * 176.04596 * 1 2 3 26 26 H 1.08995 * 109.47565 * 53.94934 * 3 2 1 27 27 H 1.09004 * 109.47187 * 173.95410 * 3 2 1 28 28 H 0.97006 * 119.99928 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.68298 * 50.66958 * 14 12 2 30 30 H 1.08999 * 109.67502 * 290.11556 * 14 12 2 31 31 H 1.09004 * 109.25379 * 290.80543 * 15 14 12 32 32 H 1.09000 * 109.22178 * 171.35251 * 15 14 12 33 33 H 1.08000 * 119.73126 * 359.69419 * 17 16 15 34 34 H 1.08002 * 120.11662 * 179.89018 * 18 17 16 35 35 H 1.08001 * 120.11523 * 179.82919 * 19 18 17 36 36 H 1.07993 * 119.72706 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.25493 * 222.00433 * 22 21 16 38 38 H 1.08996 * 109.22227 * 102.55418 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 2.7128 4.0015 -0.6155 8 14 1.5827 4.1868 -3.1382 9 1 0.2708 4.8678 -2.9956 10 1 2.6253 5.1875 -3.4802 11 1 1.4984 3.1710 -4.2183 12 6 1.9955 -0.7659 1.1377 13 1 3.0789 -0.6560 1.1850 14 6 1.6334 -2.2470 0.9749 15 6 2.3905 -3.0470 2.0329 16 6 2.1817 -2.4489 3.3995 17 6 2.4780 -3.2385 4.5033 18 6 2.3136 -2.7467 5.7814 19 6 1.8519 -1.4566 5.9665 20 6 1.5569 -0.6710 4.8717 21 6 1.7188 -1.1655 3.5837 22 6 1.3696 -0.2567 2.4344 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5611 1.9274 0.8308 27 1 3.0798 1.3443 0.1082 28 1 2.9874 4.9177 -0.7775 29 1 1.9215 -2.5882 -0.0193 30 1 0.5603 -2.3797 1.1126 31 1 3.4545 -3.0394 1.7961 32 1 2.0294 -4.0755 2.0317 33 1 2.8397 -4.2459 4.3595 34 1 2.5444 -3.3672 6.6347 35 1 1.7186 -1.0668 6.9649 36 1 1.1967 0.3367 5.0171 37 1 1.7416 0.7463 2.6434 38 1 0.2861 -0.2217 2.3210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114490070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:51 Heat of formation + Delta-G solvation = 16.408147 kcal Electronic energy + Delta-G solvation = -17612.908252 eV Core-core repulsion = 15033.365805 eV Total energy + Delta-G solvation = -2579.542447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99917 -37.42357 -34.24736 -32.53808 -31.92583 -29.58364 -28.20082 -27.02624 -25.10350 -23.50696 -22.13961 -21.94635 -20.38000 -18.50795 -16.59566 -16.10801 -15.43196 -15.34145 -14.66147 -14.30651 -13.83607 -13.80394 -13.49220 -13.31659 -12.92127 -12.54483 -12.26951 -11.94308 -11.78755 -11.36614 -11.30845 -11.02796 -10.88775 -10.83660 -10.47702 -10.38588 -10.24364 -10.17442 -9.70058 -9.15923 -8.63631 -8.44910 -8.35431 -7.16819 -6.01068 -4.02204 1.47630 1.50215 3.32574 3.38864 3.43321 3.86359 4.43361 4.79629 4.83627 5.04534 5.09192 5.16110 5.26757 5.34204 5.37630 5.51104 5.54481 5.76575 5.80466 5.85605 6.00784 6.09409 6.14352 6.20156 6.22887 6.25365 6.36981 6.53981 6.59673 6.62613 6.74568 6.79768 6.87476 7.14303 7.33811 7.38314 7.82492 8.11734 8.23402 8.58373 9.05673 9.61938 11.09773 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.039752 B = 0.005078 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.189476 B = 5512.929981 C = 5896.817870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.532 5.532 3 C 0.191 3.809 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.087 3.913 13 H 0.077 0.923 14 C -0.109 4.109 15 C -0.079 4.079 16 C -0.077 4.077 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.059 4.059 22 C -0.120 4.120 23 H 0.016 0.984 24 H 0.073 0.927 25 H 0.046 0.954 26 H -0.007 1.007 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -12.975 10.120 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.023 4.023 13 H 0.095 0.905 14 C -0.147 4.147 15 C -0.116 4.116 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.140 4.140 21 C -0.060 4.060 22 C -0.158 4.158 23 H 0.035 0.965 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.793 -13.012 9.686 16.321 hybrid contribution -0.428 1.086 0.143 1.176 sum -2.221 -11.927 9.830 15.614 Atomic orbital electron populations 1.22309 0.89323 0.99617 1.00549 1.62367 1.06850 1.17882 1.38354 1.19739 0.95330 0.81752 0.96553 1.21183 1.34669 0.96911 1.01782 0.91888 1.24984 0.95312 0.97375 0.96943 1.69963 1.38429 1.11396 1.34102 0.86517 0.77961 0.79240 0.83824 1.20786 1.21282 1.19763 1.21667 0.99374 0.93137 0.88082 0.90478 1.21590 0.99734 0.94855 0.98522 1.20489 1.01180 0.98784 0.91193 1.19707 0.98986 0.93557 0.95420 1.21121 1.01043 0.99606 0.92338 1.20980 1.01091 0.95986 0.96850 1.21017 1.00355 0.94563 0.98468 1.21236 1.00652 0.99942 0.92204 1.19752 0.97636 0.93904 0.94704 1.21311 1.02069 0.98520 0.93937 0.96528 0.90865 0.93530 0.98965 0.95360 0.92973 0.90599 0.92159 0.90613 0.91085 0.86491 0.86547 0.86482 0.86322 0.90436 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.60 60.07 0.52 1.11 16 2 N -0.53 -11.39 4.71 -236.28 -1.11 -12.50 16 3 C 0.19 4.97 4.33 -4.97 -0.02 4.95 16 4 C -0.51 -14.25 8.46 -34.44 -0.29 -14.54 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.09 1.56 2.21 -67.68 -0.15 1.41 16 13 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 14 C -0.11 -1.61 4.92 -26.70 -0.13 -1.74 16 15 C -0.08 -1.00 5.67 -28.05 -0.16 -1.16 16 16 C -0.08 -1.07 5.74 -104.61 -0.60 -1.67 16 17 C -0.12 -1.50 9.61 -39.45 -0.38 -1.88 16 18 C -0.13 -1.52 10.05 -39.68 -0.40 -1.92 16 19 C -0.13 -1.54 10.05 -39.68 -0.40 -1.94 16 20 C -0.12 -1.71 9.61 -39.44 -0.38 -2.09 16 21 C -0.06 -0.90 5.74 -104.62 -0.60 -1.50 16 22 C -0.12 -2.04 4.35 -28.06 -0.12 -2.16 16 23 H 0.02 0.31 6.02 -51.93 -0.31 0.00 16 24 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 25 H 0.05 0.77 6.72 -51.93 -0.35 0.42 16 26 H -0.01 -0.20 7.32 -51.93 -0.38 -0.58 16 27 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.87 7.05 -51.93 -0.37 0.51 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.55 8.05 -52.49 -0.42 1.13 16 37 H 0.08 1.45 7.35 -51.93 -0.38 1.07 16 38 H 0.08 1.37 5.78 -51.93 -0.30 1.07 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -29.86 298.51 -9.84 -39.70 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.73 Total: -0.60 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.21 Total: -21.68 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.38 Total: -38.58 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.86 -9.84 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114490070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.103 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds