Wall clock time and date at job start Sun Mar 29 2020 23:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00046 * 2 1 4 4 C 1.50709 * 109.46978 * 293.95221 * 3 2 1 5 5 H 1.07994 * 119.99731 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99970 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00022 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47318 * 89.99619 * 8 6 4 10 10 H 1.48502 * 109.47076 * 209.99819 * 8 6 4 11 11 H 1.48504 * 109.46900 * 329.99367 * 8 6 4 12 12 C 1.46904 * 110.99907 * 123.95097 * 2 1 3 13 13 H 1.09003 * 109.70711 * 186.58014 * 12 2 1 14 14 C 1.53331 * 109.68145 * 66.04969 * 12 2 1 15 15 C 1.52732 * 108.38314 * 170.39465 * 14 12 2 16 16 C 1.50636 * 110.58993 * 51.08646 * 15 14 12 17 17 C 1.38911 * 117.74750 * 162.51431 * 16 15 14 18 18 C 1.37930 * 120.54354 * 179.71484 * 17 16 15 19 19 C 1.38265 * 119.77262 * 359.91034 * 18 17 16 20 20 C 1.37944 * 119.77065 * 0.10185 * 19 18 17 21 21 C 1.37663 * 122.56224 * 342.29426 * 16 15 14 22 22 C 1.50629 * 122.56951 * 0.62056 * 21 16 15 23 23 H 1.08998 * 109.47147 * 296.04586 * 1 2 3 24 24 H 1.09000 * 109.46725 * 56.05018 * 1 2 3 25 25 H 1.09003 * 109.46811 * 176.04596 * 1 2 3 26 26 H 1.08995 * 109.47565 * 53.94934 * 3 2 1 27 27 H 1.09004 * 109.47187 * 173.95410 * 3 2 1 28 28 H 0.97006 * 119.99928 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.68298 * 50.66958 * 14 12 2 30 30 H 1.08999 * 109.67502 * 290.11556 * 14 12 2 31 31 H 1.09004 * 109.25379 * 290.80543 * 15 14 12 32 32 H 1.09000 * 109.22178 * 171.35251 * 15 14 12 33 33 H 1.08000 * 119.73126 * 359.69419 * 17 16 15 34 34 H 1.08002 * 120.11662 * 179.89018 * 18 17 16 35 35 H 1.08001 * 120.11523 * 179.82919 * 19 18 17 36 36 H 1.07993 * 119.72706 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.25493 * 222.00433 * 22 21 16 38 38 H 1.08996 * 109.22227 * 102.55418 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 2.7128 4.0015 -0.6155 8 14 1.5827 4.1868 -3.1382 9 1 0.2708 4.8678 -2.9956 10 1 2.6253 5.1875 -3.4802 11 1 1.4984 3.1710 -4.2183 12 6 1.9955 -0.7659 1.1377 13 1 3.0789 -0.6560 1.1850 14 6 1.6334 -2.2470 0.9749 15 6 2.3905 -3.0470 2.0329 16 6 2.1817 -2.4489 3.3995 17 6 2.4780 -3.2385 4.5033 18 6 2.3136 -2.7467 5.7814 19 6 1.8519 -1.4566 5.9665 20 6 1.5569 -0.6710 4.8717 21 6 1.7188 -1.1655 3.5837 22 6 1.3696 -0.2567 2.4344 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5611 1.9274 0.8308 27 1 3.0798 1.3443 0.1082 28 1 2.9874 4.9177 -0.7775 29 1 1.9215 -2.5882 -0.0193 30 1 0.5603 -2.3797 1.1126 31 1 3.4545 -3.0394 1.7961 32 1 2.0294 -4.0755 2.0317 33 1 2.8397 -4.2459 4.3595 34 1 2.5444 -3.3672 6.6347 35 1 1.7186 -1.0668 6.9649 36 1 1.1967 0.3367 5.0171 37 1 1.7416 0.7463 2.6434 38 1 0.2861 -0.2217 2.3210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114490070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:50 Heat of formation + Delta-G solvation = -0.610128 kcal Electronic energy + Delta-G solvation = -17613.646219 eV Core-core repulsion = 15033.365805 eV Total energy + Delta-G solvation = -2580.280415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16133 -38.84291 -35.72627 -34.40285 -33.16509 -30.81022 -29.57344 -28.81279 -26.83933 -24.88658 -23.57325 -23.02258 -21.87305 -19.84497 -18.56697 -17.31822 -16.95261 -16.55532 -16.41202 -15.52601 -15.34385 -15.07685 -14.98242 -14.75177 -14.19540 -13.96148 -13.64761 -13.49907 -13.20071 -12.84166 -12.73971 -12.63031 -12.51621 -12.25657 -12.16049 -12.07339 -11.67678 -11.51966 -11.33540 -11.10088 -10.62131 -9.63959 -9.45219 -8.93114 -8.20586 -6.31121 0.47847 0.48999 1.40510 1.42172 1.53976 2.40103 2.85916 3.11631 3.30976 3.74383 3.86803 3.94412 4.09207 4.14512 4.28968 4.33540 4.48194 4.51428 4.56370 4.67213 4.68543 4.75686 4.86909 5.00432 5.02565 5.07649 5.14875 5.16825 5.19561 5.31696 5.36165 5.40696 5.63067 5.63900 5.65734 5.80487 6.05377 6.16500 6.35164 6.65995 6.85931 7.38849 8.90543 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.039752 B = 0.005078 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.189476 B = 5512.929981 C = 5896.817870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.539 5.539 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.085 3.915 13 H 0.056 0.944 14 C -0.099 4.099 15 C -0.074 4.074 16 C -0.088 4.088 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.087 4.087 22 C -0.107 4.107 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.080 0.920 26 H -0.036 1.036 27 H -0.004 1.004 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.043 0.957 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -15.238 10.441 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.261 5.261 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.188 1.188 12 C -0.024 4.024 13 H 0.075 0.925 14 C -0.137 4.137 15 C -0.111 4.111 16 C -0.088 4.088 17 C -0.141 4.141 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.087 4.087 22 C -0.145 4.145 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.099 0.901 26 H -0.018 1.018 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.285 -15.299 10.015 18.427 hybrid contribution -0.252 1.748 0.148 1.772 sum -2.537 -13.551 10.163 17.127 Atomic orbital electron populations 1.22300 0.87858 1.01415 0.99755 1.62301 1.08193 1.15127 1.40525 1.19340 0.93201 0.84182 0.94983 1.21508 1.34781 0.97547 1.02417 0.91754 1.25939 0.94959 0.98074 1.00761 1.70102 1.39431 1.11844 1.36327 0.85365 0.77926 0.78099 0.79130 1.19770 1.20783 1.18765 1.21730 0.98114 0.95159 0.87438 0.92529 1.21516 1.00495 0.92063 0.99636 1.20501 1.01185 0.99735 0.89694 1.19907 0.98999 0.93128 0.96783 1.21462 1.00128 1.00621 0.91879 1.21419 0.99343 0.95793 0.97859 1.21331 0.99555 0.94870 0.98852 1.21348 1.01579 1.00342 0.92641 1.19671 1.00156 0.94675 0.94223 1.21068 1.01464 0.97385 0.94629 0.96577 0.92543 0.90137 1.01837 0.98625 0.92736 0.90382 0.91481 0.90221 0.88010 0.83552 0.83285 0.84144 0.86815 0.93865 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.36 8.60 127.69 1.10 2.46 16 2 N -0.54 -23.89 4.71 -901.47 -4.25 -28.14 16 3 C 0.21 11.53 4.33 85.56 0.37 11.90 16 4 C -0.52 -30.39 8.46 25.60 0.22 -30.17 16 5 H 0.06 3.64 7.12 -2.91 -0.02 3.62 16 6 C 0.00 0.02 5.46 84.65 0.46 0.49 16 7 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 8 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.08 3.15 2.21 44.94 0.10 3.25 16 13 H 0.06 2.30 7.89 -2.39 -0.02 2.28 16 14 C -0.10 -2.81 4.92 30.62 0.15 -2.66 16 15 C -0.07 -1.70 5.67 29.74 0.17 -1.54 16 16 C -0.09 -2.30 5.74 -19.86 -0.11 -2.41 16 17 C -0.12 -2.58 9.61 22.36 0.21 -2.37 16 18 C -0.13 -2.49 10.05 22.20 0.22 -2.27 16 19 C -0.13 -2.88 10.05 22.21 0.22 -2.66 16 20 C -0.14 -3.97 9.61 22.36 0.21 -3.75 16 21 C -0.09 -2.66 5.74 -19.86 -0.11 -2.78 16 22 C -0.11 -3.84 4.35 29.74 0.13 -3.71 16 23 H 0.02 0.62 6.02 -2.39 -0.01 0.61 16 24 H 0.06 2.38 6.76 -2.39 -0.02 2.36 16 25 H 0.08 2.58 6.72 -2.39 -0.02 2.57 16 26 H -0.04 -2.15 7.32 -2.39 -0.02 -2.16 16 27 H 0.00 -0.26 7.93 -2.39 -0.02 -0.28 16 28 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.81 7.05 -2.39 -0.02 1.79 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.77 8.13 -2.39 -0.02 1.75 16 33 H 0.15 2.19 8.05 -2.91 -0.02 2.16 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.11 3.16 8.05 -2.91 -0.02 3.13 16 37 H 0.04 1.79 7.35 -2.39 -0.02 1.77 16 38 H 0.08 2.75 5.78 -2.39 -0.01 2.74 16 Total: -1.00 -66.64 298.51 2.44 -64.21 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.03 Total: 10.56 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 3.34 Total: -36.22 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -3.96 Total: -85.50 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.64 2.44 -64.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114490070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.598 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds