Wall clock time and date at job start Sun Mar 29 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99704 * 2 1 4 4 H 1.48496 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47172 * 300.00117 * 3 2 1 6 6 H 1.48502 * 109.47009 * 60.00065 * 3 2 1 7 7 C 1.37877 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46889 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46947 * 180.02562 * 10 9 7 12 12 C 1.46504 * 119.99776 * 269.99791 * 11 10 9 13 13 C 1.53001 * 109.47367 * 269.99917 * 12 11 10 14 14 C 1.52997 * 117.49923 * 243.62383 * 13 12 11 15 15 C 1.52998 * 117.49676 * 175.00041 * 13 12 11 16 16 C 1.39675 * 120.00236 * 90.00257 * 11 10 9 17 17 C 1.38914 * 120.07317 * 359.97438 * 16 11 10 18 18 C 1.38100 * 119.92419 * 179.97438 * 17 16 11 19 19 C 1.38288 * 120.07489 * 359.97438 * 18 17 16 20 20 C 1.38283 * 120.14964 * 0.27921 * 19 18 17 21 21 C 1.38104 * 120.07445 * 359.44998 * 20 19 18 22 22 H 0.96997 * 119.99551 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46782 * 59.99916 * 9 7 2 24 24 H 1.08996 * 109.46998 * 299.99940 * 9 7 2 25 25 H 1.09001 * 109.47291 * 59.99839 * 10 9 7 26 26 H 1.08996 * 109.47306 * 299.99818 * 10 9 7 27 27 H 1.09001 * 109.47060 * 30.00465 * 12 11 10 28 28 H 1.09007 * 109.46721 * 150.00254 * 12 11 10 29 29 H 1.09003 * 115.54605 * 29.33525 * 13 12 11 30 30 H 1.09001 * 117.50019 * 359.97438 * 14 13 12 31 31 H 1.08997 * 117.49724 * 145.01868 * 14 13 12 32 32 H 1.09001 * 117.49495 * 214.97658 * 15 13 12 33 33 H 1.09005 * 117.50246 * 0.02562 * 15 13 12 34 34 H 1.07999 * 120.03471 * 359.95547 * 17 16 11 35 35 H 1.08000 * 119.95830 * 180.02562 * 18 17 16 36 36 H 1.08002 * 119.92149 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.96059 * 179.69879 * 20 19 18 38 38 H 1.07999 * 120.04050 * 180.27354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5130 -4.9307 -0.0045 12 6 1.1464 -5.5666 1.2634 13 6 2.2680 -6.5092 1.7044 14 6 1.9433 -8.0018 1.7908 15 6 2.1277 -7.1836 3.0705 16 6 1.1643 -5.5342 -1.2149 17 6 1.5107 -4.9324 -2.4180 18 6 1.1648 -5.5320 -3.6130 19 6 0.4748 -6.7304 -3.6128 20 6 0.1238 -7.3295 -2.4170 21 6 0.4714 -6.7382 -1.2184 22 1 -0.4849 0.8401 -0.0004 23 1 0.6248 -2.5562 -0.8920 24 1 0.6242 -2.5575 0.8880 25 1 2.8721 -3.6050 0.8873 26 1 2.8721 -3.6034 -0.8926 27 1 0.9956 -4.8004 2.0239 28 1 0.2252 -6.1344 1.1321 29 1 3.2709 -6.2298 1.3816 30 1 0.9305 -8.3123 1.5340 31 1 2.7326 -8.7048 1.5247 32 1 3.0385 -7.3484 3.6462 33 1 1.2362 -6.9562 3.6550 34 1 2.0497 -3.9965 -2.4188 35 1 1.4343 -5.0648 -4.5487 36 1 0.2052 -7.1970 -4.5488 37 1 -0.4193 -8.2630 -2.4204 38 1 0.2009 -7.2088 -0.2847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177178074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:18 Heat of formation + Delta-G solvation = 47.152007 kcal Electronic energy + Delta-G solvation = -17368.144723 eV Core-core repulsion = 14789.935430 eV Total energy + Delta-G solvation = -2578.209293 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31030 -37.40670 -35.50273 -33.06791 -30.81765 -30.01063 -29.01367 -26.26957 -24.22274 -22.46369 -22.03936 -21.43104 -20.69397 -19.43483 -17.34940 -16.46116 -15.66821 -14.94388 -14.78371 -14.56713 -14.35072 -14.07947 -13.30384 -13.17118 -12.78037 -12.37527 -12.25029 -12.00089 -11.63320 -11.49982 -11.37105 -10.97964 -10.92098 -10.73514 -10.47964 -10.29867 -10.00214 -9.85702 -9.82714 -9.19108 -9.09559 -8.47298 -8.38231 -6.69572 -6.03456 -4.07697 1.90371 2.10160 3.28591 3.36169 3.39556 3.60230 3.93508 4.36600 4.43814 4.82451 4.97119 5.05484 5.26737 5.32190 5.37140 5.49177 5.59507 5.64221 5.72897 5.87452 5.88606 5.92199 5.99937 6.07726 6.12763 6.25933 6.34588 6.46380 6.50616 6.81281 6.84701 6.93008 7.08048 7.33983 7.60716 7.68191 7.81672 8.03327 8.13512 8.36696 9.00079 9.56894 11.07291 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.006458 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.235118 B = 4334.374159 C = 5491.887157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.010 3.990 10 C 0.124 3.876 11 N -0.618 5.618 12 C 0.154 3.846 13 C -0.164 4.164 14 C -0.179 4.179 15 C -0.180 4.180 16 C 0.232 3.768 17 C -0.192 4.192 18 C -0.075 4.075 19 C -0.196 4.196 20 C -0.079 4.079 21 C -0.206 4.206 22 H 0.260 0.740 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -14.720 0.145 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.028 4.028 10 C 0.002 3.998 11 N -0.325 5.325 12 C 0.030 3.970 13 C -0.184 4.184 14 C -0.216 4.216 15 C -0.218 4.218 16 C 0.128 3.872 17 C -0.215 4.215 18 C -0.094 4.094 19 C -0.216 4.216 20 C -0.098 4.098 21 C -0.229 4.229 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.306 -14.485 0.333 14.671 hybrid contribution 0.389 1.002 0.048 1.076 sum 2.695 -13.483 0.381 13.755 Atomic orbital electron populations 1.69991 1.06087 1.26549 1.50424 1.25004 0.94810 0.99259 0.95155 0.86540 0.80097 0.83766 0.77624 1.19696 1.20962 1.21002 1.21160 0.93013 0.90836 1.51189 0.92553 1.19452 0.94502 0.91091 0.97792 1.21822 0.94984 0.82095 1.00870 1.46879 1.60434 1.23343 1.01814 1.20912 0.94809 0.95156 0.86169 1.22944 1.01413 0.94133 0.99870 1.22987 1.02437 0.94246 1.01918 1.22926 1.03165 1.04879 0.90790 1.17889 0.91903 0.91141 0.86253 1.20863 1.07141 1.02400 0.91062 1.20840 0.96616 0.94771 0.97125 1.20738 1.05520 0.98009 0.97340 1.20741 0.98147 0.98643 0.92246 1.20612 1.06785 0.97357 0.98154 0.93001 0.96096 0.96577 0.92129 0.91873 0.90153 0.91128 0.87765 0.88968 0.89255 0.89050 0.88788 0.85464 0.86788 0.87331 0.87121 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.01 0.25 5.30 -27.88 -0.15 0.10 16 10 C 0.12 2.52 5.10 -4.04 -0.02 2.50 16 11 N -0.62 -11.13 2.61 -171.75 -0.45 -11.58 16 12 C 0.15 2.34 5.44 -4.04 -0.02 2.32 16 13 C -0.16 -2.14 6.01 -90.62 -0.54 -2.69 16 14 C -0.18 -1.98 9.94 -26.73 -0.27 -2.25 16 15 C -0.18 -1.96 10.25 -26.73 -0.27 -2.23 16 16 C 0.23 4.16 6.55 -83.79 -0.55 3.61 16 17 C -0.19 -3.49 9.21 -39.38 -0.36 -3.85 16 18 C -0.07 -1.19 10.04 -39.61 -0.40 -1.58 16 19 C -0.20 -2.86 10.04 -39.55 -0.40 -3.26 16 20 C -0.08 -1.14 10.04 -39.61 -0.40 -1.54 16 21 C -0.21 -3.26 9.21 -39.38 -0.36 -3.62 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 1.27 6.20 -51.93 -0.32 0.95 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.07 1.01 5.93 -51.92 -0.31 0.70 16 29 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.09 0.97 7.51 -51.93 -0.39 0.58 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.13 2.43 6.14 -52.49 -0.32 2.11 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.64 5.37 -52.49 -0.28 1.35 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -29.78 314.81 -9.95 -39.72 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.81 Total: 2.43 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -4.15 Total: -25.70 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.29 Total: -37.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.78 -9.95 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177178074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.877 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds