Wall clock time and date at job start Sun Mar 29 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99704 * 2 1 4 4 H 1.48496 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47172 * 300.00117 * 3 2 1 6 6 H 1.48502 * 109.47009 * 60.00065 * 3 2 1 7 7 C 1.37877 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46889 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46947 * 180.02562 * 10 9 7 12 12 C 1.46504 * 119.99776 * 269.99791 * 11 10 9 13 13 C 1.53001 * 109.47367 * 269.99917 * 12 11 10 14 14 C 1.52997 * 117.49923 * 243.62383 * 13 12 11 15 15 C 1.52998 * 117.49676 * 175.00041 * 13 12 11 16 16 C 1.39675 * 120.00236 * 90.00257 * 11 10 9 17 17 C 1.38914 * 120.07317 * 359.97438 * 16 11 10 18 18 C 1.38100 * 119.92419 * 179.97438 * 17 16 11 19 19 C 1.38288 * 120.07489 * 359.97438 * 18 17 16 20 20 C 1.38283 * 120.14964 * 0.27921 * 19 18 17 21 21 C 1.38104 * 120.07445 * 359.44998 * 20 19 18 22 22 H 0.96997 * 119.99551 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46782 * 59.99916 * 9 7 2 24 24 H 1.08996 * 109.46998 * 299.99940 * 9 7 2 25 25 H 1.09001 * 109.47291 * 59.99839 * 10 9 7 26 26 H 1.08996 * 109.47306 * 299.99818 * 10 9 7 27 27 H 1.09001 * 109.47060 * 30.00465 * 12 11 10 28 28 H 1.09007 * 109.46721 * 150.00254 * 12 11 10 29 29 H 1.09003 * 115.54605 * 29.33525 * 13 12 11 30 30 H 1.09001 * 117.50019 * 359.97438 * 14 13 12 31 31 H 1.08997 * 117.49724 * 145.01868 * 14 13 12 32 32 H 1.09001 * 117.49495 * 214.97658 * 15 13 12 33 33 H 1.09005 * 117.50246 * 0.02562 * 15 13 12 34 34 H 1.07999 * 120.03471 * 359.95547 * 17 16 11 35 35 H 1.08000 * 119.95830 * 180.02562 * 18 17 16 36 36 H 1.08002 * 119.92149 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.96059 * 179.69879 * 20 19 18 38 38 H 1.07999 * 120.04050 * 180.27354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5130 -4.9307 -0.0045 12 6 1.1464 -5.5666 1.2634 13 6 2.2680 -6.5092 1.7044 14 6 1.9433 -8.0018 1.7908 15 6 2.1277 -7.1836 3.0705 16 6 1.1643 -5.5342 -1.2149 17 6 1.5107 -4.9324 -2.4180 18 6 1.1648 -5.5320 -3.6130 19 6 0.4748 -6.7304 -3.6128 20 6 0.1238 -7.3295 -2.4170 21 6 0.4714 -6.7382 -1.2184 22 1 -0.4849 0.8401 -0.0004 23 1 0.6248 -2.5562 -0.8920 24 1 0.6242 -2.5575 0.8880 25 1 2.8721 -3.6050 0.8873 26 1 2.8721 -3.6034 -0.8926 27 1 0.9956 -4.8004 2.0239 28 1 0.2252 -6.1344 1.1321 29 1 3.2709 -6.2298 1.3816 30 1 0.9305 -8.3123 1.5340 31 1 2.7326 -8.7048 1.5247 32 1 3.0385 -7.3484 3.6462 33 1 1.2362 -6.9562 3.6550 34 1 2.0497 -3.9965 -2.4188 35 1 1.4343 -5.0648 -4.5487 36 1 0.2052 -7.1970 -4.5488 37 1 -0.4193 -8.2630 -2.4204 38 1 0.2009 -7.2088 -0.2847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177178074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:18 Heat of formation + Delta-G solvation = 33.097857 kcal Electronic energy + Delta-G solvation = -17368.754156 eV Core-core repulsion = 14789.935430 eV Total energy + Delta-G solvation = -2578.818727 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58856 -38.47069 -36.89129 -35.07862 -32.39046 -31.48073 -30.34746 -27.87457 -25.89180 -23.70793 -23.20827 -22.82893 -21.94727 -20.75817 -18.75987 -18.46096 -16.85130 -16.59489 -16.31519 -15.84357 -15.54765 -15.40506 -14.70140 -14.50715 -14.25447 -14.00606 -13.94694 -13.43194 -13.13589 -12.86441 -12.75816 -12.47758 -12.34325 -12.13773 -11.94029 -11.86734 -11.56863 -11.34431 -11.19926 -10.82896 -10.60670 -10.53292 -9.70929 -8.25872 -8.03148 -6.35331 0.65418 0.85108 1.38786 1.39266 1.52613 2.25357 2.43139 2.96273 3.10786 3.12024 3.81757 3.99363 4.04620 4.10798 4.20179 4.31732 4.38597 4.48405 4.59799 4.66467 4.73373 4.75536 4.81565 4.89325 4.97278 4.98467 5.04688 5.24350 5.28221 5.29274 5.41819 5.51574 5.58678 5.71795 5.78254 5.84533 6.10283 6.18209 6.52662 6.76574 6.83379 7.34683 8.89342 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.006458 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.235118 B = 4334.374159 C = 5491.887157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.626 5.626 12 C 0.155 3.845 13 C -0.182 4.182 14 C -0.166 4.166 15 C -0.168 4.168 16 C 0.207 3.793 17 C -0.223 4.223 18 C -0.083 4.083 19 C -0.192 4.192 20 C -0.076 4.076 21 C -0.208 4.208 22 H 0.263 0.737 23 H -0.015 1.015 24 H -0.013 1.013 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -16.337 -0.007 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.015 4.015 10 C 0.021 3.979 11 N -0.334 5.334 12 C 0.031 3.969 13 C -0.202 4.202 14 C -0.203 4.203 15 C -0.205 4.205 16 C 0.105 3.895 17 C -0.246 4.246 18 C -0.101 4.101 19 C -0.212 4.212 20 C -0.095 4.095 21 C -0.230 4.230 22 H 0.072 0.928 23 H 0.003 0.997 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.737 -16.136 0.179 16.368 hybrid contribution 0.190 1.433 0.037 1.446 sum 2.926 -14.704 0.216 14.994 Atomic orbital electron populations 1.70133 1.07971 1.27722 1.51495 1.25984 0.95691 1.03437 0.94537 0.85375 0.79171 0.78603 0.77757 1.18300 1.20497 1.20317 1.21601 0.93631 0.91944 1.50815 0.91742 1.19253 0.94612 0.93084 0.94502 1.21345 0.93686 0.81859 1.01036 1.46792 1.60868 1.22640 1.03067 1.20980 0.96194 0.95090 0.84586 1.22701 0.99758 0.95301 1.02404 1.23066 1.03220 0.92627 1.01346 1.23025 1.04026 1.03257 0.90203 1.18168 0.93132 0.92354 0.85891 1.20892 1.08760 1.02315 0.92585 1.21110 0.96599 0.95505 0.96899 1.21143 1.04008 0.97114 0.98926 1.21196 0.97243 0.99578 0.91451 1.20861 1.06027 0.96463 0.99682 0.92796 0.99685 0.99476 0.91460 0.91975 0.91823 0.90162 0.89183 0.88070 0.88301 0.87875 0.88079 0.87888 0.85191 0.84226 0.83545 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.28 5.30 29.85 0.16 1.44 16 10 C 0.14 6.15 5.10 86.38 0.44 6.59 16 11 N -0.63 -23.36 2.61 -697.29 -1.82 -25.18 16 12 C 0.15 4.78 5.44 86.38 0.47 5.25 16 13 C -0.18 -4.64 6.01 -10.79 -0.06 -4.70 16 14 C -0.17 -3.28 9.94 30.59 0.30 -2.98 16 15 C -0.17 -3.32 10.25 30.59 0.31 -3.01 16 16 C 0.21 7.55 6.55 38.21 0.25 7.80 16 17 C -0.22 -8.37 9.21 22.40 0.21 -8.17 16 18 C -0.08 -2.58 10.04 22.25 0.22 -2.35 16 19 C -0.19 -5.11 10.04 22.29 0.22 -4.88 16 20 C -0.08 -1.98 10.04 22.25 0.22 -1.75 16 21 C -0.21 -6.26 9.21 22.40 0.21 -6.05 16 22 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 23 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 24 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 25 H 0.07 2.75 8.07 -2.39 -0.02 2.73 16 26 H 0.06 2.65 6.20 -2.39 -0.01 2.63 16 27 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 28 H 0.08 2.27 5.93 -2.38 -0.01 2.25 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.10 1.83 7.51 -2.39 -0.02 1.81 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.10 4.25 6.14 -2.91 -0.02 4.23 16 35 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.13 3.43 5.37 -2.91 -0.02 3.42 16 Total: -1.00 -66.08 314.81 5.16 -60.92 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.02 Total: 18.21 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 3.65 Total: -42.95 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.53 Total: -82.64 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -66.08 5.16 -60.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177178074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.016 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds