Wall clock time and date at job start Sun Mar 29 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 13 13 C 1.53002 * 109.47269 * 65.00478 * 12 10 9 14 14 C 1.53784 * 113.60937 * 272.49475 * 13 12 10 15 15 C 1.53778 * 87.08041 * 220.01973 * 14 13 12 16 16 C 1.53778 * 87.08265 * 25.43148 * 15 14 13 17 17 C 1.50695 * 109.47124 * 85.00089 * 10 9 7 18 18 C 1.38228 * 120.00060 * 39.72706 * 17 10 9 19 19 C 1.38238 * 120.00426 * 179.81204 * 18 17 10 20 20 C 1.38241 * 119.99305 * 0.39298 * 19 18 17 21 21 C 1.38235 * 120.00229 * 359.86252 * 20 19 18 22 22 C 1.38230 * 119.99874 * 219.99770 * 17 10 9 23 23 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 25 25 H 1.09000 * 109.46805 * 184.99938 * 12 10 9 26 26 H 1.08992 * 109.47408 * 304.99875 * 12 10 9 27 27 H 1.08995 * 112.85430 * 43.79570 * 13 12 10 28 28 H 1.09004 * 113.61675 * 334.56681 * 14 13 12 29 29 H 1.09001 * 113.61661 * 105.47014 * 14 13 12 30 30 H 1.09001 * 113.61666 * 270.88575 * 15 14 13 31 31 H 1.08998 * 113.61952 * 139.98296 * 15 14 13 32 32 H 1.08999 * 113.61839 * 220.02290 * 16 15 14 33 33 H 1.09002 * 113.68851 * 89.12681 * 16 15 14 34 34 H 1.08008 * 120.00215 * 359.97438 * 18 17 10 35 35 H 1.07997 * 120.00567 * 180.23109 * 19 18 17 36 36 H 1.07997 * 119.99637 * 179.83434 * 20 19 18 37 37 H 1.08003 * 120.00279 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00467 * 359.97438 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 1.1806 -4.7488 -0.6288 13 6 0.9199 -4.4243 -2.1011 14 6 -0.3044 -3.5211 -2.3253 15 6 -0.6274 -4.3957 -3.5482 16 6 0.1464 -5.5245 -2.8468 17 6 2.4164 -4.0373 1.3999 18 6 1.5098 -3.8298 2.4226 19 6 1.8371 -4.1825 3.7186 20 6 3.0741 -4.7352 3.9930 21 6 3.9827 -4.9379 2.9711 22 6 3.6538 -4.5888 1.6745 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 -0.0068 25 1 1.6900 -5.7096 -0.5533 26 1 0.2322 -4.7974 -0.0940 27 1 1.8143 -4.0876 -2.6252 28 1 -1.0482 -3.5888 -1.5314 29 1 -0.0477 -2.4927 -2.5795 30 1 -0.1567 -4.0503 -4.4687 31 1 -1.6906 -4.6039 -3.6677 32 1 0.7671 -6.1135 -3.5220 33 1 -0.4731 -6.1409 -2.1953 34 1 0.5448 -3.3945 2.2088 35 1 1.1274 -4.0238 4.5170 36 1 3.3308 -5.0083 5.0058 37 1 4.9493 -5.3693 3.1855 38 1 4.3636 -4.7473 0.8762 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181344293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:43 Heat of formation + Delta-G solvation = 42.636180 kcal Electronic energy + Delta-G solvation = -17730.226938 eV Core-core repulsion = 15151.821824 eV Total energy + Delta-G solvation = -2578.405114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08033 -38.14922 -35.03045 -32.25301 -30.32901 -29.50491 -28.92721 -25.12647 -24.71701 -23.10478 -22.00042 -21.63686 -19.64258 -18.87813 -17.08992 -16.28693 -15.28607 -14.83308 -14.71226 -14.11847 -14.05372 -13.46624 -13.25523 -12.83487 -12.69090 -12.35479 -12.09530 -11.94150 -11.72043 -11.12577 -10.89359 -10.78341 -10.63744 -10.58220 -10.31322 -10.07586 -10.02118 -9.74684 -9.61509 -9.48725 -8.87780 -8.33873 -8.03700 -6.93579 -5.74092 -3.01640 1.96430 2.01204 3.44453 3.51369 3.52489 4.38845 4.62562 5.06647 5.10792 5.17368 5.38261 5.39248 5.43201 5.52986 5.61571 5.75301 5.80171 5.96389 5.98380 6.04211 6.11855 6.17011 6.18925 6.25489 6.35778 6.44732 6.51449 6.60709 6.68204 6.74964 6.86925 6.90049 7.01378 7.05913 7.11862 7.42834 7.62712 7.75864 8.44223 9.56688 10.12081 10.48612 11.48148 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.010838 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.877024 B = 2582.994259 C = 4444.200768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.710 5.710 10 C 0.208 3.792 11 H 0.056 0.944 12 C -0.106 4.106 13 C -0.094 4.094 14 C -0.119 4.119 15 C -0.148 4.148 16 C -0.141 4.141 17 C -0.077 4.077 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.126 4.126 23 H 0.253 0.747 24 H 0.386 0.614 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -11.607 -0.070 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.732 3.268 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.351 5.351 10 C 0.097 3.903 11 H 0.074 0.926 12 C -0.145 4.145 13 C -0.113 4.113 14 C -0.157 4.157 15 C -0.185 4.185 16 C -0.179 4.179 17 C -0.080 4.080 18 C -0.106 4.106 19 C -0.147 4.147 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.220 0.780 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.315 -11.442 -0.103 11.675 hybrid contribution 0.256 1.103 0.230 1.155 sum 2.571 -10.340 0.127 10.655 Atomic orbital electron populations 1.69657 1.04920 1.25332 1.58019 1.24658 0.95436 0.97372 1.03193 0.86205 0.78903 0.84568 0.77075 1.20677 1.22009 1.22043 1.19246 0.90936 0.84064 1.42036 0.91399 1.42411 1.05698 0.99237 1.87730 1.19313 0.95004 0.86901 0.89068 0.92619 1.21778 0.99983 0.97716 0.94982 1.22361 0.97776 0.96009 0.95109 1.22813 0.97070 0.99262 0.96528 1.22855 0.99448 0.97967 0.98273 1.22989 0.99178 0.96470 0.99220 1.21290 0.93139 0.94467 0.99131 1.21001 1.00213 0.97381 0.91966 1.21103 0.96731 0.99994 0.96845 1.20934 0.94654 1.01851 0.98385 1.20972 0.98903 1.01580 0.93378 1.21013 0.96812 1.00415 0.96236 0.93710 0.77950 0.92393 0.92141 0.89773 0.90637 0.90479 0.90905 0.92361 0.92475 0.90716 0.86045 0.87056 0.87282 0.87208 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.23 -6.24 9.92 -15.06 -0.15 -6.39 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.77 3.68 -54.55 -0.20 -16.97 16 10 C 0.21 4.05 2.48 -69.08 -0.17 3.88 16 11 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 12 C -0.11 -1.75 4.60 -26.73 -0.12 -1.87 16 13 C -0.09 -1.50 3.52 -89.81 -0.32 -1.82 16 14 C -0.12 -2.06 6.31 -25.92 -0.16 -2.22 16 15 C -0.15 -2.10 8.08 -25.92 -0.21 -2.30 16 16 C -0.14 -1.90 7.64 -25.92 -0.20 -2.10 16 17 C -0.08 -1.46 4.92 -104.63 -0.52 -1.97 16 18 C -0.09 -1.67 9.33 -39.59 -0.37 -2.04 16 19 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 20 C -0.14 -2.16 10.05 -39.58 -0.40 -2.56 16 21 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 22 C -0.13 -2.14 9.67 -39.58 -0.38 -2.52 16 23 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.39 9.61 6.96 -40.82 -0.28 9.33 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 27 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 28 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.12 2.48 7.71 -52.48 -0.40 2.07 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -28.53 313.35 -9.78 -38.30 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.11 Total: 10.30 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -3.89 Total: -27.29 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.52 Total: -43.45 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.53 -9.78 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181344293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.938 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds