Wall clock time and date at job start Sun Mar 29 2020 22:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 13 13 C 1.52997 * 109.47080 * 294.99494 * 12 10 9 14 14 C 1.53782 * 113.61798 * 272.49911 * 13 12 10 15 15 C 1.53786 * 87.08323 * 220.01989 * 14 13 12 16 16 C 1.53784 * 87.07856 * 25.43234 * 15 14 13 17 17 C 1.50701 * 109.46815 * 274.72181 * 10 9 7 18 18 C 1.38228 * 120.00160 * 319.72735 * 17 10 9 19 19 C 1.38241 * 120.00134 * 179.78988 * 18 17 10 20 20 C 1.38229 * 119.99600 * 0.44133 * 19 18 17 21 21 C 1.38233 * 120.00263 * 359.81484 * 20 19 18 22 22 C 1.38234 * 120.00076 * 359.97438 * 21 20 19 23 23 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.47492 * 54.99915 * 12 10 9 26 26 H 1.09007 * 109.47243 * 174.99697 * 12 10 9 27 27 H 1.09000 * 112.84939 * 43.80965 * 13 12 10 28 28 H 1.09000 * 113.61104 * 334.56842 * 14 13 12 29 29 H 1.09000 * 113.61307 * 105.46645 * 14 13 12 30 30 H 1.08999 * 113.61174 * 270.88145 * 15 14 13 31 31 H 1.08998 * 113.61053 * 139.97734 * 15 14 13 32 32 H 1.08997 * 113.60985 * 220.01880 * 16 15 14 33 33 H 1.08998 * 113.69055 * 89.12718 * 16 15 14 34 34 H 1.08005 * 120.00157 * 359.97438 * 18 17 10 35 35 H 1.08004 * 119.99758 * 180.27426 * 19 18 17 36 36 H 1.08002 * 119.99977 * 179.83313 * 20 19 18 37 37 H 1.08000 * 119.99953 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.99626 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5624 -3.2046 -0.5963 12 6 5.4969 -2.2569 -0.6209 13 6 5.3474 -1.8682 -2.0931 14 6 5.2746 -3.0743 -3.0445 15 6 6.1600 -2.2673 -4.0087 16 6 6.6791 -1.5111 -2.7743 17 6 4.2613 -2.9721 1.4066 18 6 4.5453 -2.0852 2.4282 19 6 4.6779 -2.5444 3.7253 20 6 4.5356 -3.8918 3.9994 21 6 4.2569 -4.7794 2.9770 22 6 4.1199 -4.3196 1.6806 23 1 -0.4851 0.8401 0.0004 24 1 3.8646 -0.3620 0.0004 25 1 6.0129 -1.4601 -0.0853 26 1 6.0743 -3.1784 -0.5453 27 1 4.5610 -1.1318 -2.2587 28 1 5.7584 -3.9691 -2.6528 29 1 4.2731 -3.2672 -3.4290 30 1 5.5954 -1.6407 -4.6991 31 1 6.9226 -2.8665 -4.5062 32 1 6.8114 -0.4421 -2.9409 33 1 7.5469 -1.9774 -2.3079 34 1 4.6606 -1.0330 2.2134 35 1 4.8954 -1.8508 4.5241 36 1 4.6419 -4.2510 5.0123 37 1 4.1453 -5.8321 3.1912 38 1 3.9018 -5.0132 0.8820 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181344310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:44 Heat of formation + Delta-G solvation = 30.835908 kcal Electronic energy + Delta-G solvation = -17664.377582 eV Core-core repulsion = 15085.460770 eV Total energy + Delta-G solvation = -2578.916812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49979 -39.45331 -36.92189 -34.20202 -31.87076 -31.51420 -30.54918 -26.62833 -26.28111 -24.62854 -23.37898 -22.99107 -21.22513 -20.13094 -19.70270 -17.65521 -16.80356 -16.46267 -16.18425 -15.94555 -15.39800 -15.16474 -14.85916 -14.38002 -14.11507 -14.07345 -13.60284 -13.23236 -13.18734 -13.04641 -12.90390 -12.25716 -12.24159 -12.13462 -11.90848 -11.77797 -11.65336 -11.39876 -11.09678 -10.94041 -10.78499 -9.68487 -9.48930 -9.24899 -8.00344 -5.32595 0.61777 0.64943 1.35184 1.38273 1.45206 2.48088 3.01549 3.31029 3.61392 3.78255 3.86684 3.91610 4.06530 4.16268 4.20599 4.28690 4.39411 4.51408 4.58310 4.74777 4.80047 4.85032 4.87528 4.93329 5.02842 5.10319 5.11845 5.20219 5.26646 5.29691 5.35254 5.53575 5.70583 5.72937 5.74203 5.78582 5.94326 6.24932 6.27960 7.09711 7.85312 8.05383 9.21810 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.010989 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.484626 B = 2547.503057 C = 4234.507628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.063 4.063 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.253 1.253 7 C -0.214 4.214 8 H 0.051 0.949 9 N -0.737 5.737 10 C 0.213 3.787 11 H 0.050 0.950 12 C -0.096 4.096 13 C -0.116 4.116 14 C -0.136 4.136 15 C -0.136 4.136 16 C -0.132 4.132 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.135 4.135 23 H 0.255 0.745 24 H 0.364 0.636 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.561 -7.360 0.363 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.177 1.177 7 C -0.345 4.345 8 H 0.069 0.931 9 N -0.379 5.379 10 C 0.105 3.895 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.135 4.135 14 C -0.174 4.174 15 C -0.173 4.173 16 C -0.169 4.169 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.154 4.154 23 H 0.064 0.936 24 H 0.198 0.802 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.361 -7.436 0.337 17.975 hybrid contribution -0.509 1.346 0.059 1.440 sum 15.853 -6.091 0.396 16.987 Atomic orbital electron populations 1.69880 1.07104 1.26360 1.60388 1.25393 0.95960 1.00852 1.03205 0.85504 0.78669 0.80165 0.78027 1.20510 1.22655 1.17724 1.18931 0.82571 0.93007 1.40031 0.93067 1.42706 1.02217 1.03419 1.89593 1.19359 0.92712 0.87252 0.90177 0.93220 1.21709 0.94853 1.01913 0.94893 1.22521 0.98372 0.98803 0.93784 1.22981 0.99752 0.97339 0.97295 1.22757 0.99413 0.98966 0.96179 1.22952 0.96774 1.00396 0.96772 1.21033 0.97064 0.93932 0.97987 1.20971 1.00064 0.99111 0.93465 1.21376 1.00747 0.96772 0.96269 1.21373 1.00793 0.93073 1.00122 1.21395 0.99731 1.00721 0.92480 1.21246 1.01341 0.94941 0.97842 0.93578 0.80228 0.92115 0.89724 0.91446 0.88946 0.93166 0.90933 0.89944 0.91932 0.88804 0.87943 0.84998 0.83827 0.83864 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.24 13.97 21.65 0.30 -63.94 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.95 46.18 27.74 68.60 1.90 48.08 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 7 C -0.21 -12.25 10.41 84.03 0.87 -11.38 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 9 N -0.74 -34.04 3.54 -326.50 -1.16 -35.19 16 10 C 0.21 8.09 2.48 44.25 0.11 8.20 16 11 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 12 C -0.10 -2.85 4.57 30.59 0.14 -2.71 16 13 C -0.12 -3.38 3.59 -10.27 -0.04 -3.42 16 14 C -0.14 -3.46 7.63 31.12 0.24 -3.23 16 15 C -0.14 -2.96 8.08 31.12 0.25 -2.71 16 16 C -0.13 -3.00 7.64 31.12 0.24 -2.76 16 17 C -0.10 -3.56 4.92 -19.87 -0.10 -3.65 16 18 C -0.12 -4.26 9.32 22.27 0.21 -4.06 16 19 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 20 C -0.14 -3.65 10.05 22.27 0.22 -3.43 16 21 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 22 C -0.14 -4.31 9.67 22.27 0.22 -4.10 16 23 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 24 H 0.36 16.30 5.66 -92.71 -0.52 15.78 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.08 2.16 7.84 -2.38 -0.02 2.14 16 27 H 0.07 2.43 7.62 -2.39 -0.02 2.41 16 28 H 0.09 2.03 7.90 -2.39 -0.02 2.02 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.10 3.89 7.73 -2.91 -0.02 3.87 16 35 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.13 3.60 8.04 -2.91 -0.02 3.58 16 Total: -1.00 -67.78 312.01 4.76 -63.02 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.44 Total: 31.65 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 3.28 Total: -43.62 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -0.85 Total: -99.13 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -67.78 4.76 -63.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181344310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.853 kcal (2) G-P(sol) polarization free energy of solvation -67.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds