Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 112.93964 * 2 1 4 4 C 1.53936 * 113.73355 * 228.29073 * 2 1 3 5 5 N 1.47964 * 86.18110 * 221.92467 * 4 2 1 6 6 C 1.46897 * 110.99889 * 137.58671 * 5 4 2 7 7 C 1.52993 * 109.47244 * 70.63906 * 6 5 4 8 8 C 1.50706 * 109.47016 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99866 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00007 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99725 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00125 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47011 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47353 * 119.99818 * 12 10 8 15 15 H 1.48500 * 109.46991 * 240.00436 * 12 10 8 16 16 C 1.47963 * 90.76174 * 24.69084 * 5 4 2 17 17 H 1.08997 * 113.85705 * 89.63851 * 16 5 4 18 18 C 1.50701 * 113.75940 * 220.99083 * 16 5 4 19 19 C 1.38231 * 119.99846 * 16.47406 * 18 16 5 20 20 C 1.38243 * 120.00070 * 179.97438 * 19 18 16 21 21 C 1.38235 * 119.99602 * 0.07188 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00257 * 196.55956 * 18 16 5 24 24 H 1.08994 * 109.47436 * 288.43847 * 1 2 3 25 25 H 1.09003 * 109.47030 * 48.43707 * 1 2 3 26 26 H 1.09004 * 109.47246 * 168.43016 * 1 2 3 27 27 H 1.08997 * 113.75842 * 336.24398 * 4 2 1 28 28 H 1.09001 * 113.75552 * 107.49734 * 4 2 1 29 29 H 1.09004 * 109.46507 * 190.64209 * 6 5 4 30 30 H 1.09003 * 109.47241 * 310.63759 * 6 5 4 31 31 H 1.08998 * 109.47702 * 300.00071 * 7 6 5 32 32 H 1.09003 * 109.47228 * 60.00326 * 7 6 5 33 33 H 0.96998 * 119.99714 * 179.97438 * 11 10 8 34 34 H 1.08001 * 120.00367 * 0.08711 * 19 18 16 35 35 H 1.08000 * 119.99728 * 180.34119 * 20 19 18 36 36 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.99751 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9548 1.0038 0.0000 4 6 2.1496 -0.9376 -1.0520 5 7 3.1155 -1.3198 0.0017 6 6 3.3459 -2.7706 0.0035 7 6 4.1451 -3.1616 -1.2412 8 6 4.3820 -4.6499 -1.2390 9 1 4.0003 -5.2562 -0.4310 10 6 5.0860 -5.2374 -2.2687 11 7 5.5513 -4.4988 -3.2525 12 14 5.3790 -7.0822 -2.2665 13 1 4.7575 -7.6806 -1.0579 14 1 4.7727 -7.6813 -3.4824 15 1 6.8394 -7.3514 -2.2574 16 6 2.1495 -0.9350 1.0544 17 1 1.4897 -1.7452 1.3647 18 6 2.7757 -0.2088 2.2170 19 6 4.0389 0.3380 2.0908 20 6 4.6132 1.0047 3.1571 21 6 3.9246 1.1231 4.3499 22 6 2.6617 0.5755 4.4763 23 6 2.0875 -0.0910 3.4100 24 1 -0.3634 0.3250 0.9748 25 1 -0.3633 0.6818 -0.7689 26 1 -0.3634 -1.0068 -0.2061 27 1 1.4905 -1.7496 -1.3590 28 1 2.6009 -0.4144 -1.8950 29 1 3.9054 -3.0485 0.8967 30 1 2.3879 -3.2907 -0.0017 31 1 3.5856 -2.8836 -2.1344 32 1 5.1031 -2.6416 -1.2360 33 1 6.0469 -4.9121 -3.9767 34 1 4.5766 0.2461 1.1587 35 1 5.5979 1.4367 3.0567 36 1 4.3734 1.6436 5.1830 37 1 2.1239 0.6677 5.4084 38 1 1.1009 -0.5191 3.5089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245435551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = 43.352623 kcal Electronic energy + Delta-G solvation = -17289.775088 eV Core-core repulsion = 14711.401041 eV Total energy + Delta-G solvation = -2578.374047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27504 -38.27545 -33.68388 -31.86646 -31.21631 -30.69904 -29.11060 -25.75460 -25.46655 -22.96334 -22.33951 -21.30436 -20.03306 -19.12093 -16.94022 -16.36002 -15.41187 -15.04458 -14.69296 -14.34408 -14.22357 -14.02882 -13.47201 -13.18602 -12.75549 -12.60935 -12.38932 -12.12885 -11.95380 -11.40504 -11.31998 -11.00251 -10.89214 -10.85313 -10.54806 -10.36652 -10.22338 -9.84743 -9.33871 -9.11641 -8.74441 -8.46992 -8.36622 -8.19372 -5.99643 -4.02142 1.49512 1.59141 3.31068 3.38449 3.42582 3.89754 4.35422 4.50799 4.66653 4.91122 5.05809 5.11739 5.17784 5.31861 5.36425 5.48376 5.56475 5.67087 5.73679 5.79665 5.84228 5.89366 6.01449 6.13598 6.13844 6.24568 6.26326 6.29613 6.50212 6.61953 6.72195 6.80554 6.92887 7.13658 7.20099 7.50253 7.73153 7.87952 8.06260 8.42953 9.05140 9.61703 11.11766 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.005155 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.629975 B = 5430.644552 C = 5990.864429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.472 5.472 6 C 0.031 3.969 7 C 0.030 3.970 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.064 3.936 17 H 0.081 0.919 18 C -0.059 4.059 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.118 4.118 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 11.614 11.138 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.113 0.887 4 C -0.115 4.115 5 N -0.193 5.193 6 C -0.097 4.097 7 C -0.008 4.008 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.046 4.046 17 H 0.099 0.901 18 C -0.060 4.060 19 C -0.107 4.107 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.426 11.840 10.962 17.762 hybrid contribution -0.467 -1.624 -0.022 1.690 sum -7.893 10.216 10.940 16.922 Atomic orbital electron populations 1.21759 0.94890 1.01885 1.01557 1.23071 0.95075 0.99216 0.95498 0.88678 1.23836 0.94165 0.97655 0.95822 1.68454 1.30992 1.18267 1.01631 1.22793 0.99196 0.85461 1.02212 1.19018 0.95258 0.95718 0.90764 1.21230 1.34629 0.92965 1.07177 0.92786 1.24993 0.95698 0.98044 0.95549 1.69984 1.37168 1.35186 1.10909 0.86547 0.77946 0.85684 0.77899 1.19780 1.21021 1.20955 1.22418 0.93859 0.96891 0.91396 0.90074 1.19610 0.94759 0.97773 0.93814 1.21225 0.94714 0.95401 0.99395 1.21205 0.99886 0.99811 0.93525 1.21087 0.95281 1.00687 0.97678 1.21007 0.95866 0.99282 0.98432 1.20948 0.99832 1.00047 0.92875 0.92608 0.92409 0.92574 0.91182 0.89626 0.92020 0.95562 0.96592 0.95839 0.93058 0.84540 0.86351 0.86676 0.86581 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.73 37.16 0.36 -1.22 16 2 C -0.11 -1.48 4.10 -89.68 -0.37 -1.85 16 3 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 4 C 0.01 0.23 6.66 -2.76 -0.02 0.21 16 5 N -0.47 -8.63 4.92 -231.72 -1.14 -9.77 16 6 C 0.03 0.67 4.76 -3.83 -0.02 0.65 16 7 C 0.03 0.79 5.04 -27.88 -0.14 0.65 16 8 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.06 0.97 3.10 -67.80 -0.21 0.76 16 17 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 18 C -0.06 -0.86 5.35 -104.63 -0.56 -1.42 16 19 C -0.09 -1.33 9.44 -39.58 -0.37 -1.71 16 20 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16 21 C -0.13 -1.52 10.05 -39.59 -0.40 -1.91 16 22 C -0.13 -1.49 10.05 -39.59 -0.40 -1.89 16 23 C -0.12 -1.51 9.74 -39.58 -0.39 -1.90 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.63 7.94 -51.93 -0.41 0.21 16 27 H 0.07 1.17 7.60 -51.93 -0.39 0.78 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 31 H 0.02 0.44 7.54 -51.93 -0.39 0.05 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.14 2.21 7.30 -52.49 -0.38 1.83 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -30.52 314.59 -10.15 -40.67 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.15 Total: -0.75 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -3.32 Total: -25.35 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.40 Total: -36.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.52 -10.15 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245435551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.022 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds