Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 112.93964 * 2 1 4 4 C 1.53936 * 113.73355 * 228.29073 * 2 1 3 5 5 N 1.47964 * 86.18110 * 221.92467 * 4 2 1 6 6 C 1.46897 * 110.99889 * 137.58671 * 5 4 2 7 7 C 1.52993 * 109.47244 * 70.63906 * 6 5 4 8 8 C 1.50706 * 109.47016 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99866 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00007 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99725 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00125 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47011 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47353 * 119.99818 * 12 10 8 15 15 H 1.48500 * 109.46991 * 240.00436 * 12 10 8 16 16 C 1.47963 * 90.76174 * 24.69084 * 5 4 2 17 17 H 1.08997 * 113.85705 * 89.63851 * 16 5 4 18 18 C 1.50701 * 113.75940 * 220.99083 * 16 5 4 19 19 C 1.38231 * 119.99846 * 16.47406 * 18 16 5 20 20 C 1.38243 * 120.00070 * 179.97438 * 19 18 16 21 21 C 1.38235 * 119.99602 * 0.07188 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00257 * 196.55956 * 18 16 5 24 24 H 1.08994 * 109.47436 * 288.43847 * 1 2 3 25 25 H 1.09003 * 109.47030 * 48.43707 * 1 2 3 26 26 H 1.09004 * 109.47246 * 168.43016 * 1 2 3 27 27 H 1.08997 * 113.75842 * 336.24398 * 4 2 1 28 28 H 1.09001 * 113.75552 * 107.49734 * 4 2 1 29 29 H 1.09004 * 109.46507 * 190.64209 * 6 5 4 30 30 H 1.09003 * 109.47241 * 310.63759 * 6 5 4 31 31 H 1.08998 * 109.47702 * 300.00071 * 7 6 5 32 32 H 1.09003 * 109.47228 * 60.00326 * 7 6 5 33 33 H 0.96998 * 119.99714 * 179.97438 * 11 10 8 34 34 H 1.08001 * 120.00367 * 0.08711 * 19 18 16 35 35 H 1.08000 * 119.99728 * 180.34119 * 20 19 18 36 36 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.99751 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9548 1.0038 0.0000 4 6 2.1496 -0.9376 -1.0520 5 7 3.1155 -1.3198 0.0017 6 6 3.3459 -2.7706 0.0035 7 6 4.1451 -3.1616 -1.2412 8 6 4.3820 -4.6499 -1.2390 9 1 4.0003 -5.2562 -0.4310 10 6 5.0860 -5.2374 -2.2687 11 7 5.5513 -4.4988 -3.2525 12 14 5.3790 -7.0822 -2.2665 13 1 4.7575 -7.6806 -1.0579 14 1 4.7727 -7.6813 -3.4824 15 1 6.8394 -7.3514 -2.2574 16 6 2.1495 -0.9350 1.0544 17 1 1.4897 -1.7452 1.3647 18 6 2.7757 -0.2088 2.2170 19 6 4.0389 0.3380 2.0908 20 6 4.6132 1.0047 3.1571 21 6 3.9246 1.1231 4.3499 22 6 2.6617 0.5755 4.4763 23 6 2.0875 -0.0910 3.4100 24 1 -0.3634 0.3250 0.9748 25 1 -0.3633 0.6818 -0.7689 26 1 -0.3634 -1.0068 -0.2061 27 1 1.4905 -1.7496 -1.3590 28 1 2.6009 -0.4144 -1.8950 29 1 3.9054 -3.0485 0.8967 30 1 2.3879 -3.2907 -0.0017 31 1 3.5856 -2.8836 -2.1344 32 1 5.1031 -2.6416 -1.2360 33 1 6.0469 -4.9121 -3.9767 34 1 4.5766 0.2461 1.1587 35 1 5.5979 1.4367 3.0567 36 1 4.3734 1.6436 5.1830 37 1 2.1239 0.6677 5.4084 38 1 1.1009 -0.5191 3.5089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245435551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = 26.217633 kcal Electronic energy + Delta-G solvation = -17290.518117 eV Core-core repulsion = 14711.401041 eV Total energy + Delta-G solvation = -2579.117076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52903 -39.34141 -35.70389 -33.61459 -32.23497 -31.69668 -30.72882 -27.41614 -26.74653 -24.68372 -23.38124 -22.36559 -21.81601 -20.31006 -18.60042 -17.92931 -16.60727 -16.47110 -16.35102 -15.87773 -15.47937 -15.14064 -14.93876 -14.26593 -14.16442 -13.86200 -13.70148 -13.40129 -13.38827 -13.17820 -12.83445 -12.54384 -12.37762 -12.19237 -11.92110 -11.84741 -11.60040 -11.47657 -11.26354 -11.07531 -10.59821 -9.73767 -9.70270 -9.46439 -8.23256 -6.35379 0.50144 0.59733 1.37797 1.38522 1.51884 2.37859 2.85074 3.09866 3.12871 3.49305 3.77751 4.02309 4.14674 4.23946 4.29958 4.35855 4.37928 4.46577 4.50115 4.55302 4.73673 4.78563 4.83279 4.84556 4.97779 4.99190 5.16494 5.22812 5.26439 5.38151 5.39948 5.49570 5.62330 5.65446 5.71311 5.77623 5.88063 6.14372 6.21490 6.29388 6.81150 7.34125 8.89123 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.005155 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.629975 B = 5430.644552 C = 5990.864429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.096 0.904 4 C 0.006 3.994 5 N -0.490 5.490 6 C 0.051 3.949 7 C 0.040 3.960 8 C -0.546 4.546 9 H 0.058 0.942 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.277 1.277 16 C 0.068 3.932 17 H 0.086 0.914 18 C -0.077 4.077 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.031 0.969 31 H -0.006 1.006 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 11.577 13.226 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.115 0.885 4 C -0.123 4.123 5 N -0.212 5.212 6 C -0.077 4.077 7 C 0.003 3.997 8 C -0.584 4.584 9 H 0.076 0.924 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.203 1.203 16 C -0.041 4.041 17 H 0.103 0.897 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.153 4.153 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.012 0.988 32 H 0.006 0.994 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.789 11.815 13.060 19.683 hybrid contribution -0.014 -1.533 -0.647 1.664 sum -8.804 10.283 12.413 18.367 Atomic orbital electron populations 1.21728 0.92356 1.02329 1.03068 1.22927 0.96934 0.98177 0.92727 0.88533 1.23893 0.94006 0.98381 0.96032 1.68432 1.33263 1.15516 1.03980 1.22403 0.98263 0.88014 0.99070 1.18819 0.93865 0.94772 0.92278 1.21634 1.35087 0.94094 1.07588 0.92364 1.25974 0.95104 1.03572 0.94912 1.70119 1.37741 1.37626 1.11663 0.85364 0.78049 0.78963 0.78460 1.18628 1.20069 1.20279 1.22473 0.92954 0.97264 0.91426 0.89664 1.19641 0.95029 0.98623 0.94507 1.21147 0.95384 0.97393 0.99349 1.21410 1.00653 0.99582 0.93627 1.21458 0.95311 1.00060 0.97739 1.21415 0.95823 0.97850 0.99178 1.21195 1.00592 1.00000 0.92248 0.90897 0.91029 0.92713 0.91634 0.90578 0.92966 0.95117 0.98756 0.99411 0.92683 0.87135 0.85140 0.83805 0.83455 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.73 71.98 0.70 -2.03 16 2 C -0.09 -2.34 4.10 -10.15 -0.04 -2.38 16 3 H 0.10 2.53 8.09 -2.39 -0.02 2.51 16 4 C 0.01 0.19 6.66 86.41 0.58 0.76 16 5 N -0.49 -18.66 4.92 -887.04 -4.36 -23.02 16 6 C 0.05 2.28 4.76 86.30 0.41 2.69 16 7 C 0.04 2.23 5.04 29.85 0.15 2.38 16 8 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 10 C 0.00 0.14 5.46 84.65 0.46 0.60 16 11 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 12 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 C 0.07 2.04 3.10 44.27 0.14 2.18 16 17 H 0.09 2.49 7.75 -2.39 -0.02 2.47 16 18 C -0.08 -2.22 5.35 -19.87 -0.11 -2.32 16 19 C -0.11 -3.47 9.44 22.27 0.21 -3.26 16 20 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 21 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 22 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 23 C -0.12 -2.82 9.74 22.27 0.22 -2.60 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.12 7.94 -2.38 -0.02 1.10 16 27 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.33 7.69 -2.39 -0.02 1.31 16 31 H -0.01 -0.35 7.54 -2.39 -0.02 -0.37 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.11 3.85 7.30 -2.91 -0.02 3.82 16 35 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -67.48 314.59 2.57 -64.91 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.00 Total: 12.46 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 3.62 Total: -43.73 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -4.08 Total: -80.76 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.48 2.57 -64.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245435551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.125 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds