Wall clock time and date at job start Sun Mar 29 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 120.00141 * 2 1 4 4 H 1.48496 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46770 * 299.99869 * 3 2 1 6 6 H 1.48499 * 109.46875 * 59.99865 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47002 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47329 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00249 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47303 * 179.97438 * 12 11 10 14 14 H 1.09006 * 115.55928 * 29.31116 * 13 12 11 15 15 C 1.53082 * 117.51613 * 243.60985 * 13 12 11 16 16 C 1.52999 * 59.98325 * 252.51846 * 15 13 12 17 17 H 1.09000 * 117.50341 * 252.49845 * 16 15 13 18 18 C 1.50707 * 117.49522 * 107.49775 * 16 15 13 19 19 C 1.38238 * 119.99792 * 171.25410 * 18 16 15 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 16 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 351.23347 * 18 16 15 24 24 H 0.97008 * 119.99709 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47090 * 59.99609 * 9 7 2 26 26 H 1.08993 * 109.46892 * 299.99498 * 9 7 2 27 27 H 1.09003 * 109.47296 * 59.99743 * 10 9 7 28 28 H 1.08999 * 109.47553 * 300.00149 * 10 9 7 29 29 H 1.00900 * 110.99663 * 303.96004 * 11 10 9 30 30 H 1.09006 * 109.47252 * 59.99773 * 12 11 10 31 31 H 1.08998 * 109.47472 * 300.00542 * 12 11 10 32 32 H 1.09005 * 117.49189 * 145.03558 * 15 13 12 33 33 H 1.08996 * 117.53107 * 359.97438 * 15 13 12 34 34 H 1.08005 * 120.00068 * 359.97438 * 19 18 16 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07999 * 119.99968 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4351 -6.0758 0.0018 13 6 1.6351 -7.3800 0.0031 14 1 0.6581 -7.3328 -0.4781 15 6 1.7800 -8.2974 1.2199 16 6 2.4180 -8.6893 -0.1144 17 1 1.9563 -9.5033 -0.6732 18 6 3.9182 -8.5956 -0.2224 19 6 4.5643 -9.1046 -1.3335 20 6 5.9403 -9.0181 -1.4328 21 6 6.6703 -8.4222 -0.4215 22 6 6.0247 -7.9180 0.6920 23 6 4.6482 -8.0002 0.7893 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8745 -4.9840 0.7827 30 1 3.0631 -6.0344 0.8918 31 1 3.0632 -6.0353 -0.8881 32 1 0.8983 -8.8534 1.5387 33 1 2.4456 -7.9723 2.0195 34 1 3.9939 -9.5698 -2.1239 35 1 6.4451 -9.4162 -2.3007 36 1 7.7453 -8.3543 -0.4993 37 1 6.5954 -7.4563 1.4843 38 1 4.1434 -7.6019 1.6570 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309506363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:19 Heat of formation + Delta-G solvation = 35.897660 kcal Electronic energy + Delta-G solvation = -16656.818547 eV Core-core repulsion = 14078.121229 eV Total energy + Delta-G solvation = -2578.697318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91474 -37.45852 -35.25580 -32.80542 -31.06842 -30.62918 -29.48077 -25.83023 -23.91097 -23.27287 -22.69117 -20.87864 -20.59983 -19.67972 -17.01268 -16.31824 -15.91706 -15.19853 -15.10147 -14.46369 -14.37645 -14.08732 -13.54115 -13.48296 -12.90036 -12.84943 -12.59037 -12.10679 -12.04863 -11.39193 -11.09534 -11.08095 -10.96957 -10.88028 -10.65162 -10.44119 -10.09745 -9.85520 -9.35791 -9.11215 -8.99962 -8.58043 -8.33488 -7.76878 -5.97913 -4.00264 1.24092 1.32003 3.32525 3.39718 3.44040 3.50677 4.00821 4.41378 4.47603 4.59934 4.73738 4.89117 4.91674 5.01601 5.13170 5.27601 5.38079 5.38621 5.48741 5.54408 5.69816 5.81159 5.87311 5.95896 5.99417 6.01819 6.31172 6.37554 6.40211 6.43435 6.47864 6.56099 6.91542 7.01023 7.52170 7.76095 7.86115 8.00409 8.11471 8.46235 9.07231 9.63469 11.13620 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.004002 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.015758 B = 6995.392992 C = 7651.748317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.690 5.690 12 C 0.089 3.911 13 C -0.127 4.127 14 H 0.117 0.883 15 C -0.177 4.177 16 C -0.119 4.119 17 H 0.112 0.888 18 C -0.044 4.044 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.118 4.118 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.336 0.664 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -20.034 0.737 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.040 4.040 13 C -0.145 4.145 14 H 0.135 0.865 15 C -0.214 4.214 16 C -0.138 4.138 17 H 0.130 0.870 18 C -0.044 4.044 19 C -0.134 4.134 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.136 4.136 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.476 -19.912 0.048 21.641 hybrid contribution 0.792 0.971 0.893 1.539 sum 9.268 -18.941 0.940 21.108 Atomic orbital electron populations 1.69988 1.06032 1.26445 1.50825 1.25003 0.94836 0.99206 0.95324 0.86537 0.80090 0.83799 0.77579 1.19774 1.20963 1.21025 1.21224 0.93024 0.91030 1.50657 0.92730 1.19076 0.94035 0.90443 0.97727 1.22144 0.96957 0.88480 0.98573 1.60569 1.19856 1.02042 1.49628 1.21506 0.93714 0.88634 1.00145 1.22546 1.00682 0.90202 1.01108 0.86493 1.23252 1.02714 1.03995 0.91395 1.21152 0.90780 0.99891 1.01936 0.87022 1.19138 0.93369 0.97565 0.94340 1.20953 0.94446 1.00512 0.97467 1.21110 0.94087 0.99694 0.98836 1.21126 0.99815 0.99248 0.94435 1.21139 0.94526 0.99646 0.98193 1.21121 0.94012 0.99493 0.98992 0.93063 0.95631 0.96785 0.96779 0.92435 0.84682 0.95616 0.91187 0.88452 0.88591 0.86124 0.86187 0.86296 0.86152 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.46 5.62 -3.82 -0.02 1.44 16 11 N -0.69 -12.77 6.50 -113.78 -0.74 -13.51 16 12 C 0.09 1.37 4.62 -3.83 -0.02 1.35 16 13 C -0.13 -1.59 5.95 -90.58 -0.54 -2.13 16 14 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 15 C -0.18 -1.86 9.52 -26.69 -0.25 -2.11 16 16 C -0.12 -1.29 6.04 -91.77 -0.55 -1.85 16 17 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.04 -0.51 4.97 -104.62 -0.52 -1.03 16 19 C -0.12 -1.25 9.74 -39.58 -0.39 -1.64 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.13 -1.31 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.38 7.87 -39.58 -0.31 -1.69 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.34 5.95 8.73 -39.29 -0.34 5.61 16 30 H 0.03 0.39 6.22 -51.93 -0.32 0.07 16 31 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.00 6.07 -51.93 -0.32 0.69 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.36 5.20 -52.49 -0.27 1.09 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -30.95 314.43 -10.50 -41.46 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.86 Total: 2.87 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -4.35 Total: -25.92 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.00 Total: -40.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.95 -10.50 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309506363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.354 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds