Wall clock time and date at job start Sun Mar 29 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 120.00141 * 2 1 4 4 H 1.48496 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46770 * 299.99869 * 3 2 1 6 6 H 1.48499 * 109.46875 * 59.99865 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47002 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47329 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00249 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47303 * 179.97438 * 12 11 10 14 14 H 1.09006 * 115.55928 * 29.31116 * 13 12 11 15 15 C 1.53082 * 117.51613 * 243.60985 * 13 12 11 16 16 C 1.52999 * 59.98325 * 252.51846 * 15 13 12 17 17 H 1.09000 * 117.50341 * 252.49845 * 16 15 13 18 18 C 1.50707 * 117.49522 * 107.49775 * 16 15 13 19 19 C 1.38238 * 119.99792 * 171.25410 * 18 16 15 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 16 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 351.23347 * 18 16 15 24 24 H 0.97008 * 119.99709 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47090 * 59.99609 * 9 7 2 26 26 H 1.08993 * 109.46892 * 299.99498 * 9 7 2 27 27 H 1.09003 * 109.47296 * 59.99743 * 10 9 7 28 28 H 1.08999 * 109.47553 * 300.00149 * 10 9 7 29 29 H 1.00900 * 110.99663 * 303.96004 * 11 10 9 30 30 H 1.09006 * 109.47252 * 59.99773 * 12 11 10 31 31 H 1.08998 * 109.47472 * 300.00542 * 12 11 10 32 32 H 1.09005 * 117.49189 * 145.03558 * 15 13 12 33 33 H 1.08996 * 117.53107 * 359.97438 * 15 13 12 34 34 H 1.08005 * 120.00068 * 359.97438 * 19 18 16 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07999 * 119.99968 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4351 -6.0758 0.0018 13 6 1.6351 -7.3800 0.0031 14 1 0.6581 -7.3328 -0.4781 15 6 1.7800 -8.2974 1.2199 16 6 2.4180 -8.6893 -0.1144 17 1 1.9563 -9.5033 -0.6732 18 6 3.9182 -8.5956 -0.2224 19 6 4.5643 -9.1046 -1.3335 20 6 5.9403 -9.0181 -1.4328 21 6 6.6703 -8.4222 -0.4215 22 6 6.0247 -7.9180 0.6920 23 6 4.6482 -8.0002 0.7893 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8745 -4.9840 0.7827 30 1 3.0631 -6.0344 0.8918 31 1 3.0632 -6.0353 -0.8881 32 1 0.8983 -8.8534 1.5387 33 1 2.4456 -7.9723 2.0195 34 1 3.9939 -9.5698 -2.1239 35 1 6.4451 -9.4162 -2.3007 36 1 7.7453 -8.3543 -0.4993 37 1 6.5954 -7.4563 1.4843 38 1 4.1434 -7.6019 1.6570 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309506363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:19 Heat of formation + Delta-G solvation = 18.574402 kcal Electronic energy + Delta-G solvation = -16657.569740 eV Core-core repulsion = 14078.121229 eV Total energy + Delta-G solvation = -2579.448511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76673 -38.46160 -36.82418 -34.86950 -31.95450 -31.66897 -31.08894 -27.51190 -25.11764 -24.68972 -23.50724 -22.50225 -21.73715 -20.69416 -18.54056 -17.89878 -16.97346 -16.52122 -16.35470 -16.05420 -15.49293 -15.17858 -14.85768 -14.43814 -14.28534 -14.18445 -13.95567 -13.67847 -13.11282 -12.94344 -12.84706 -12.50989 -12.29464 -12.09845 -11.88630 -11.78049 -11.56072 -11.37681 -11.16261 -10.92164 -10.57659 -9.81228 -9.43900 -9.28065 -8.21266 -6.32992 0.42613 0.51494 1.39960 1.40710 1.54083 2.39989 2.65479 3.12135 3.14549 3.27779 3.63168 3.89200 4.02220 4.12099 4.15591 4.25154 4.32994 4.42687 4.47730 4.54524 4.61542 4.71338 4.73761 4.83290 4.96566 5.03608 5.06002 5.16987 5.20703 5.29281 5.43633 5.60748 5.64294 5.65380 5.73966 5.77325 6.12446 6.13904 6.26002 6.54054 6.83936 7.36404 8.91208 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.004002 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.015758 B = 6995.392992 C = 7651.748317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.085 3.915 11 N -0.695 5.695 12 C 0.098 3.902 13 C -0.143 4.143 14 H 0.114 0.886 15 C -0.164 4.164 16 C -0.108 4.108 17 H 0.129 0.871 18 C -0.062 4.062 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.134 4.134 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.006 1.006 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.341 0.659 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.013 -20.628 0.746 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.044 4.044 11 N -0.326 5.326 12 C -0.031 4.031 13 C -0.161 4.161 14 H 0.132 0.868 15 C -0.201 4.201 16 C -0.127 4.127 17 H 0.147 0.853 18 C -0.062 4.062 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.795 -20.531 0.060 22.748 hybrid contribution 0.389 1.101 0.878 1.461 sum 10.185 -19.430 0.938 21.957 Atomic orbital electron populations 1.70116 1.07822 1.27796 1.51389 1.25977 0.95782 1.03374 0.94521 0.85358 0.78971 0.78549 0.77908 1.18663 1.20255 1.20133 1.21631 0.93485 0.92283 1.51023 0.92300 1.18924 0.94269 0.92205 0.95176 1.21757 0.95626 0.88586 0.98449 1.60470 1.20389 1.01678 1.50075 1.21431 0.93371 0.88703 0.99581 1.22350 1.00581 0.89591 1.03623 0.86793 1.23332 1.03206 1.02626 0.90942 1.21230 0.90456 0.98822 1.02149 0.85343 1.19321 0.93784 0.98219 0.94836 1.21239 0.95103 1.00480 0.97623 1.21451 0.94055 0.99270 0.99544 1.21453 1.01034 0.98670 0.94113 1.21405 0.94540 0.99918 0.99018 1.21253 0.94601 1.00083 0.99280 0.92672 0.98692 0.98792 0.96453 0.92886 0.84151 0.95220 0.92588 0.86637 0.88574 0.84678 0.83981 0.84271 0.84965 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.75 5.23 29.85 0.16 1.90 16 10 C 0.08 3.76 5.62 86.30 0.49 4.25 16 11 N -0.70 -25.95 6.50 -513.90 -3.34 -29.29 16 12 C 0.10 2.98 4.62 86.30 0.40 3.38 16 13 C -0.14 -3.45 5.95 -10.77 -0.06 -3.51 16 14 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 15 C -0.16 -3.18 9.52 30.62 0.29 -2.88 16 16 C -0.11 -2.18 6.04 -11.54 -0.07 -2.25 16 17 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 18 C -0.06 -1.36 4.97 -19.86 -0.10 -1.45 16 19 C -0.13 -2.54 9.74 22.27 0.22 -2.32 16 20 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 21 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 22 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 23 C -0.13 -3.02 7.87 22.27 0.18 -2.85 16 24 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.34 12.18 8.73 -89.69 -0.78 11.40 16 30 H 0.03 0.88 6.22 -2.38 -0.01 0.87 16 31 H 0.06 1.85 8.02 -2.39 -0.02 1.83 16 32 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.10 1.87 6.07 -2.39 -0.01 1.86 16 34 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.12 2.63 5.20 -2.91 -0.02 2.62 16 Total: -1.00 -66.27 314.43 2.08 -64.19 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.25 Total: 19.31 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 2.86 Total: -43.78 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -3.06 Total: -86.59 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.27 2.08 -64.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309506363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.764 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds