Wall clock time and date at job start Sun Mar 29 2020 22:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.43410 * 2 1 4 4 C 1.54889 * 110.49062 * 237.31469 * 2 1 3 5 5 C 1.54888 * 102.74841 * 203.37872 * 4 2 1 6 6 C 1.54269 * 104.19623 * 37.94327 * 5 4 2 7 7 H 1.09001 * 110.03721 * 95.67393 * 6 5 4 8 8 N 1.46496 * 110.03192 * 217.10554 * 6 5 4 9 9 C 1.39686 * 120.00104 * 273.54322 * 8 6 5 10 10 C 1.39340 * 119.94864 * 359.72968 * 9 8 6 11 11 C 1.38476 * 120.42162 * 179.72097 * 10 9 8 12 12 C 1.37695 * 120.32374 * 0.54943 * 11 10 9 13 13 C 1.40746 * 119.89506 * 359.72533 * 12 11 10 14 14 C 1.41411 * 120.20898 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00034 * 150.19137 * 14 13 12 16 16 C 1.39933 * 119.99694 * 330.18772 * 14 13 12 17 17 N 1.30828 * 119.99438 * 161.73588 * 16 14 13 18 18 Si 1.86798 * 120.00262 * 341.73338 * 16 14 13 19 19 H 1.48500 * 109.47068 * 95.41226 * 18 16 14 20 20 H 1.48493 * 109.47151 * 215.41513 * 18 16 14 21 21 H 1.48506 * 109.46952 * 335.41240 * 18 16 14 22 22 C 1.38282 * 119.95288 * 179.97438 * 9 8 6 23 23 C 1.53875 * 106.59876 * 336.38644 * 6 5 4 24 24 H 1.09003 * 109.47298 * 297.46211 * 1 2 3 25 25 H 1.08997 * 109.46956 * 57.46506 * 1 2 3 26 26 H 1.09005 * 109.46579 * 177.45873 * 1 2 3 27 27 H 1.08998 * 110.75600 * 85.05916 * 4 2 1 28 28 H 1.08997 * 110.75373 * 321.69098 * 4 2 1 29 29 H 1.08994 * 110.48895 * 279.26284 * 5 4 2 30 30 H 1.08997 * 110.48514 * 156.61629 * 5 4 2 31 31 H 0.97005 * 120.00309 * 93.54352 * 8 6 5 32 32 H 1.07991 * 119.78747 * 359.97438 * 10 9 8 33 33 H 1.07998 * 119.84075 * 180.27800 * 11 10 9 34 34 H 1.08004 * 120.05136 * 179.70613 * 12 11 10 35 35 H 0.97000 * 119.99580 * 180.02562 * 17 16 14 36 36 H 1.07994 * 120.16321 * 359.97438 * 22 9 8 37 37 H 1.08998 * 110.03250 * 119.28649 * 23 6 5 38 38 H 1.08997 * 110.03408 * 240.71770 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7835 -1.2211 5 6 3.4908 -1.1988 -0.7583 6 6 3.3166 -1.5395 0.7361 7 1 3.1693 -2.6124 0.8599 8 7 4.4942 -1.1038 1.4907 9 6 5.6031 -1.9459 1.6025 10 6 5.5857 -3.2024 1.0005 11 6 6.6818 -4.0429 1.1002 12 6 7.7972 -3.6500 1.8055 13 6 7.8271 -2.3859 2.4237 14 6 8.9694 -1.9755 3.1491 15 1 9.2231 -0.9274 3.2092 16 6 9.7710 -2.9273 3.7892 17 7 10.9910 -2.6200 4.1482 18 14 9.0991 -4.6364 4.1311 19 1 9.5090 -5.5568 3.0402 20 1 9.6373 -5.1303 5.4240 21 1 7.6167 -4.5807 4.2010 22 6 6.7143 -1.5334 2.3146 23 6 2.0699 -0.7772 1.2183 24 1 -0.3634 0.4739 0.9119 25 1 -0.3633 0.5527 -0.8664 26 1 -0.3633 -1.0267 -0.0456 27 1 2.1252 -0.1409 -2.0999 28 1 1.4582 -1.6619 -1.4201 29 1 4.1898 -0.3718 -0.8821 30 1 3.8317 -2.0738 -1.3118 31 1 4.5040 -0.2304 1.9129 32 1 4.7136 -3.5213 0.4493 33 1 6.6599 -5.0130 0.6262 34 1 8.6478 -4.3109 1.8844 35 1 11.5467 -3.2799 4.5915 36 1 6.7275 -0.5612 2.7845 37 1 1.3176 -1.4802 1.5760 38 1 2.3411 -0.0831 2.0138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313411239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:43 Heat of formation + Delta-G solvation = -1.316044 kcal Electronic energy + Delta-G solvation = -17248.524426 eV Core-core repulsion = 14668.213400 eV Total energy + Delta-G solvation = -2580.311025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.03994 -37.49632 -34.49114 -33.05006 -30.64184 -30.14064 -28.96687 -26.82277 -25.18326 -24.42065 -21.04946 -20.96261 -20.16988 -19.32243 -17.54574 -16.08767 -15.74670 -15.32770 -14.69018 -14.40447 -14.15414 -13.61631 -13.27029 -13.06207 -12.63968 -12.47310 -12.37460 -12.09035 -11.74244 -11.43533 -11.25945 -10.98663 -10.84703 -10.77668 -10.65727 -10.57428 -10.42461 -10.28763 -9.69958 -9.45488 -9.19827 -8.82340 -7.54747 -6.84541 -6.39773 -4.40180 2.74467 2.97122 3.21369 3.31382 3.43391 4.09633 4.12758 4.53217 4.61807 4.67133 4.78367 5.27979 5.33847 5.46195 5.49972 5.56676 5.59662 5.63179 5.73730 5.83123 5.88278 6.02627 6.04731 6.12004 6.28364 6.30661 6.36964 6.46031 6.64511 6.85031 6.92923 7.06615 7.37672 7.64024 7.75291 7.86021 8.04910 8.41453 8.50827 8.56909 8.83509 8.96469 10.18508 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.049826 B = 0.004742 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.825725 B = 5902.769078 C = 6058.289810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.138 4.138 6 C 0.155 3.845 7 H 0.076 0.924 8 N -0.754 5.754 9 C 0.236 3.764 10 C -0.301 4.301 11 C -0.049 4.049 12 C -0.273 4.273 13 C 0.126 3.874 14 C -0.452 4.452 15 H 0.087 0.913 16 C 0.086 3.914 17 N -0.815 5.815 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.245 1.245 22 C -0.279 4.279 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.389 0.611 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.283 0.717 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.092 1.994 -6.353 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.178 4.178 6 C 0.049 3.951 7 H 0.094 0.906 8 N -0.385 5.385 9 C 0.137 3.863 10 C -0.323 4.323 11 C -0.068 4.068 12 C -0.293 4.293 13 C 0.122 3.878 14 C -0.481 4.481 15 H 0.105 0.895 16 C -0.132 4.132 17 N -0.440 5.440 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.223 1.223 21 H -0.168 1.168 22 C -0.303 4.303 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.223 0.777 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.945 1.865 -6.317 17.252 hybrid contribution -0.013 -0.417 0.335 0.535 sum -15.958 1.448 -5.982 17.104 Atomic orbital electron populations 1.21811 0.95226 1.01700 1.01372 1.21954 0.95167 0.99305 0.95138 0.90914 1.22551 0.96530 0.99519 0.97153 1.22908 0.96387 1.01722 0.96747 1.21330 0.84868 0.98712 0.90233 0.90560 1.44705 1.14662 1.18963 1.60215 1.17571 0.86223 0.89561 0.92986 1.19927 1.00480 0.96324 1.15597 1.20369 0.93172 0.96776 0.96453 1.20888 0.99326 0.99980 1.09087 1.17442 0.90978 0.90408 0.88944 1.19449 1.04861 0.96275 1.27547 0.89457 1.26133 0.93239 1.00838 0.93017 1.69713 1.06563 1.37279 1.30418 0.86268 0.81979 0.80957 0.76586 1.19821 1.22262 1.16772 1.20408 0.94321 1.02645 1.12943 1.22509 0.97070 0.99186 0.97739 0.92844 0.92870 0.92645 0.91884 0.91577 0.91146 0.91597 0.77735 0.88973 0.89131 0.88623 0.90670 0.88617 0.91239 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.12 37.16 0.34 -0.83 16 2 C -0.10 -0.94 3.46 -88.96 -0.31 -1.25 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.22 6.33 -24.74 -0.16 -1.37 16 5 C -0.14 -1.79 6.53 -25.07 -0.16 -1.95 16 6 C 0.16 2.16 2.90 -66.81 -0.19 1.97 16 7 H 0.08 1.15 6.49 -51.93 -0.34 0.81 16 8 N -0.75 -12.75 5.22 -51.13 -0.27 -13.02 16 9 C 0.24 5.05 6.64 -83.85 -0.56 4.49 16 10 C -0.30 -6.43 9.22 -39.08 -0.36 -6.79 16 11 C -0.05 -1.10 10.02 -39.69 -0.40 -1.50 16 12 C -0.27 -6.87 7.17 -38.83 -0.28 -7.14 16 13 C 0.13 3.33 5.10 -106.85 -0.55 2.78 16 14 C -0.45 -12.71 9.57 -37.74 -0.36 -13.07 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.09 2.33 5.40 -17.34 -0.09 2.24 16 17 N -0.82 -22.45 13.93 55.55 0.77 -21.67 16 18 Si 0.92 21.74 24.52 -169.99 -4.17 17.57 16 19 H -0.27 -6.28 6.71 56.52 0.38 -5.90 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.24 -5.98 6.86 56.52 0.39 -5.59 16 22 C -0.28 -6.73 9.63 -38.67 -0.37 -7.10 16 23 C -0.13 -1.42 6.14 -25.61 -0.16 -1.57 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 29 H 0.07 0.99 8.05 -51.93 -0.42 0.58 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 6.05 8.30 -40.82 -0.34 5.71 16 32 H 0.09 1.76 6.22 -52.49 -0.33 1.43 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.10 2.41 4.73 -52.48 -0.25 2.17 16 35 H 0.28 7.06 8.30 -40.82 -0.34 6.73 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 38 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -28.39 300.15 -8.61 -36.99 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.86 Total: 6.71 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -3.61 Total: -31.11 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.51 Total: -34.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.17 Total: 17.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.39 -8.61 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.678 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds