Wall clock time and date at job start Sun Mar 29 2020 22:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00151 * 2 1 4 4 C 1.52995 * 109.46894 * 125.27781 * 3 2 1 5 5 C 1.53002 * 109.46857 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47233 * 304.99696 * 5 4 3 7 7 C 1.53001 * 109.47126 * 185.00360 * 5 4 3 8 8 N 1.46499 * 109.47415 * 64.99683 * 5 4 3 9 9 C 1.39683 * 120.00129 * 204.99926 * 8 5 4 10 10 C 1.39341 * 119.95207 * 0.02562 * 9 8 5 11 11 C 1.38474 * 120.42469 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.32701 * 359.97438 * 11 10 9 13 13 C 1.40758 * 119.88802 * 0.02562 * 12 11 10 14 14 C 1.41404 * 120.20144 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00568 * 24.32958 * 14 13 12 16 16 C 1.39937 * 119.99919 * 204.32850 * 14 13 12 17 17 N 1.30827 * 119.99747 * 17.72906 * 16 14 13 18 18 Si 1.86800 * 120.00164 * 197.73678 * 16 14 13 19 19 H 1.48495 * 109.47456 * 89.99704 * 18 16 14 20 20 H 1.48498 * 109.46890 * 209.99838 * 18 16 14 21 21 H 1.48506 * 109.46897 * 329.99377 * 18 16 14 22 22 C 1.38280 * 119.95379 * 179.72862 * 9 8 5 23 23 H 1.07997 * 119.99828 * 179.72770 * 1 2 3 24 24 H 1.08000 * 119.99867 * 359.72589 * 1 2 3 25 25 H 1.08001 * 119.99847 * 180.28017 * 2 1 3 26 26 H 1.09004 * 109.47133 * 245.27779 * 3 2 1 27 27 H 1.08999 * 109.47073 * 5.27302 * 3 2 1 28 28 H 1.08999 * 109.47582 * 299.99633 * 4 3 2 29 29 H 1.09001 * 109.47199 * 60.00135 * 4 3 2 30 30 H 1.09002 * 109.47233 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.46885 * 299.99465 * 7 5 4 32 32 H 1.08994 * 109.47706 * 59.99658 * 7 5 4 33 33 H 0.97001 * 119.99932 * 25.00246 * 8 5 4 34 34 H 1.08000 * 119.78616 * 359.97438 * 10 9 8 35 35 H 1.08000 * 119.84168 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.05537 * 179.97438 * 12 11 10 37 37 H 0.97000 * 119.99785 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.15587 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0400 1.3301 1.1776 5 6 3.8046 2.6554 1.1779 6 1 4.2866 2.7971 0.2106 7 6 4.8673 2.6308 2.2784 8 7 2.8715 3.7575 1.4246 9 6 3.1757 5.0443 0.9742 10 6 4.3667 5.2784 0.2899 11 6 4.6778 6.5500 -0.1614 12 6 3.8125 7.5977 0.0610 13 6 2.6057 7.3764 0.7508 14 6 1.7125 8.4477 0.9832 15 1 1.7264 9.3125 0.3365 16 6 0.8104 8.3873 2.0514 17 7 1.0075 7.5380 3.0268 18 14 -0.6752 9.5192 2.0844 19 1 -1.8179 8.8563 1.4062 20 1 -1.0401 9.8160 3.4929 21 1 -0.3486 10.7854 1.3804 22 6 2.2916 6.0827 1.2027 23 1 -0.5400 -0.9353 -0.0044 24 1 -0.5400 0.9353 0.0045 25 1 1.8500 -0.9353 -0.0046 26 1 2.6175 1.4048 -0.9335 27 1 1.3590 2.1314 0.0944 28 1 2.4862 1.2304 2.1111 29 1 3.7445 0.5038 1.0830 30 1 5.4117 3.5751 2.2790 31 1 4.3854 2.4892 3.2458 32 1 5.5616 1.8109 2.0949 33 1 2.0424 3.5937 1.9008 34 1 5.0515 4.4628 0.1104 35 1 5.6037 6.7209 -0.6904 36 1 4.0598 8.5878 -0.2926 37 1 0.3825 7.4964 3.7673 38 1 1.3658 5.9013 1.7284 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313414369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:51 Heat of formation + Delta-G solvation = 6.672951 kcal Electronic energy + Delta-G solvation = -17193.381403 eV Core-core repulsion = 14613.416806 eV Total energy + Delta-G solvation = -2579.964597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88104 -38.03335 -35.90804 -35.09122 -32.79905 -31.33961 -29.86846 -28.64900 -27.09018 -24.69114 -23.14520 -22.18043 -21.07856 -20.59060 -19.07842 -17.66537 -16.79695 -16.48226 -16.34526 -15.96553 -15.07312 -14.92114 -14.68001 -14.26629 -14.03684 -13.94907 -13.63790 -13.28513 -13.03132 -12.86421 -12.74965 -12.54688 -12.46732 -12.17701 -11.92321 -11.83507 -11.50313 -11.39687 -11.21976 -11.06775 -10.47188 -10.17433 -9.22953 -8.61103 -7.84854 -6.31038 1.09926 1.36288 1.37926 1.42132 1.50823 1.59485 2.23054 2.81412 2.89642 3.78206 3.88234 4.07812 4.17986 4.37723 4.41714 4.53168 4.60425 4.74102 4.80698 4.85125 4.93217 4.97744 5.04543 5.05730 5.20607 5.22172 5.32060 5.35356 5.42950 5.51580 5.64400 5.75587 5.94039 5.99724 6.14081 6.23762 6.30799 6.60947 6.97167 7.07977 7.11961 7.29437 8.39222 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.006021 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.387893 B = 4649.105404 C = 5493.853080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.108 4.108 5 C 0.151 3.849 6 H 0.069 0.931 7 C -0.162 4.162 8 N -0.747 5.747 9 C 0.226 3.774 10 C -0.301 4.301 11 C -0.064 4.064 12 C -0.288 4.288 13 C 0.108 3.892 14 C -0.506 4.506 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.823 5.823 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.262 4.262 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.127 0.873 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.388 0.612 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.284 0.716 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 -13.402 -1.830 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.145 4.145 5 C 0.045 3.955 6 H 0.088 0.912 7 C -0.220 4.220 8 N -0.378 5.378 9 C 0.124 3.876 10 C -0.323 4.323 11 C -0.082 4.082 12 C -0.309 4.309 13 C 0.105 3.895 14 C -0.536 4.536 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.449 5.449 18 Si 0.800 3.200 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.286 4.286 23 H 0.130 0.870 24 H 0.102 0.898 25 H 0.145 0.855 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.222 0.778 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.993 -13.601 -1.660 13.738 hybrid contribution -0.963 0.863 0.381 1.348 sum 0.030 -12.738 -1.279 12.802 Atomic orbital electron populations 1.23998 0.96342 1.02063 1.01850 1.23091 0.96065 0.98562 0.99285 1.20727 0.98279 0.95253 0.98911 1.21731 0.98281 0.96185 0.98334 1.20939 0.90162 0.86133 0.98222 0.91250 1.22236 0.99060 1.01714 0.99018 1.44667 1.23723 1.04852 1.64525 1.17737 0.93183 0.84902 0.91733 1.20246 0.99931 0.97341 1.14804 1.20653 0.97646 0.92666 0.97282 1.21003 0.97755 0.97918 1.14211 1.17710 0.90734 0.92581 0.88430 1.19804 1.17326 1.04025 1.12405 0.91189 1.26697 1.00522 0.97137 0.93333 1.69929 1.34616 1.33483 1.06869 0.85264 0.77480 0.78790 0.78485 1.18818 1.19208 1.18349 1.20653 1.01515 0.92174 1.14299 0.87001 0.89801 0.85550 0.91177 0.93384 0.91675 0.88329 0.94413 0.93044 0.89780 0.77818 0.86779 0.86532 0.89442 0.90534 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.15 -3.00 9.52 25.64 0.24 -2.76 16 3 C -0.09 -2.20 5.54 29.85 0.17 -2.04 16 4 C -0.11 -2.33 4.74 30.59 0.14 -2.18 16 5 C 0.15 4.24 2.27 44.99 0.10 4.35 16 6 H 0.07 2.04 6.47 -2.38 -0.02 2.02 16 7 C -0.16 -4.28 9.42 71.98 0.68 -3.60 16 8 N -0.75 -27.65 4.70 -319.10 -1.50 -29.15 16 9 C 0.23 10.55 6.63 38.17 0.25 10.80 16 10 C -0.30 -13.36 8.86 22.59 0.20 -13.16 16 11 C -0.06 -2.94 10.01 22.20 0.22 -2.72 16 12 C -0.29 -15.14 9.79 22.76 0.22 -14.92 16 13 C 0.11 6.20 5.57 -21.31 -0.12 6.09 16 14 C -0.51 -28.85 9.05 23.46 0.21 -28.64 16 15 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 16 C 0.04 1.99 5.14 85.25 0.44 2.43 16 17 N -0.82 -44.69 10.96 21.82 0.24 -44.45 16 18 Si 0.98 39.91 29.59 68.60 2.03 41.94 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 C -0.26 -14.29 8.53 22.85 0.19 -14.09 16 23 H 0.11 1.80 8.06 -2.91 -0.02 1.77 16 24 H 0.08 1.88 7.84 -2.91 -0.02 1.86 16 25 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.05 1.36 7.40 -2.39 -0.02 1.35 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.18 7.70 -2.39 -0.02 1.17 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.39 14.23 8.61 -92.71 -0.80 13.44 16 34 H 0.11 4.39 6.08 -2.91 -0.02 4.38 16 35 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 36 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 38 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 Total: -1.00 -62.10 315.36 4.93 -57.17 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.23 Total: 38.10 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 3.93 Total: -63.62 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.26 Total: -73.60 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -62.10 4.93 -57.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313414369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.845 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds