Wall clock time and date at job start Sun Mar 29 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 110.63295 * 2 1 4 4 C 1.55436 * 110.84095 * 236.81979 * 2 1 3 5 5 C 1.54911 * 101.51852 * 205.90343 * 4 2 1 6 6 N 1.47838 * 104.89565 * 37.06385 * 5 4 2 7 7 C 1.46904 * 111.00124 * 213.58081 * 6 5 4 8 8 C 1.50699 * 109.46981 * 290.12976 * 7 6 5 9 9 C 1.38639 * 119.74498 * 269.72068 * 8 7 6 10 10 C 1.37615 * 120.24565 * 179.76628 * 9 8 7 11 11 C 1.40719 * 119.74716 * 0.48452 * 10 9 8 12 12 C 1.41397 * 120.24329 * 179.79063 * 11 10 9 13 13 H 1.07998 * 119.99437 * 204.38031 * 12 11 10 14 14 C 1.39937 * 120.00270 * 24.37848 * 12 11 10 15 15 N 1.30822 * 120.00169 * 17.86550 * 14 12 11 16 16 Si 1.86797 * 120.00184 * 197.86493 * 14 12 11 17 17 H 1.48509 * 109.47019 * 60.00048 * 16 14 12 18 18 H 1.48501 * 109.47287 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47388 * 300.00246 * 16 14 12 20 20 C 1.40710 * 119.50929 * 359.77245 * 11 10 9 21 21 C 1.37618 * 119.74559 * 359.97438 * 20 11 10 22 22 C 1.47447 * 108.56895 * 335.84625 * 6 5 4 23 23 H 1.09008 * 109.47072 * 296.89095 * 1 2 3 24 24 H 1.09001 * 109.47616 * 56.89613 * 1 2 3 25 25 H 1.08999 * 109.47163 * 176.89797 * 1 2 3 26 26 H 1.08999 * 111.10606 * 87.83189 * 4 2 1 27 27 H 1.09001 * 111.00144 * 323.92075 * 4 2 1 28 28 H 1.09007 * 110.36935 * 278.17468 * 5 4 2 29 29 H 1.09000 * 110.37190 * 155.95389 * 5 4 2 30 30 H 1.09004 * 109.46799 * 50.12508 * 7 6 5 31 31 H 1.08994 * 109.47216 * 170.12748 * 7 6 5 32 32 H 1.08001 * 119.87521 * 0.02562 * 9 8 7 33 33 H 1.08004 * 120.12965 * 180.28135 * 10 9 8 34 34 H 0.97004 * 120.00423 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.12737 * 179.97438 * 20 11 10 36 36 H 1.08008 * 119.87325 * 179.97438 * 21 20 11 37 37 H 1.08996 * 109.88433 * 120.39554 * 22 6 5 38 38 H 1.08995 * 109.89033 * 241.42284 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0829 -0.7950 -1.2158 5 6 3.4690 -1.2424 -0.6883 6 7 3.2515 -1.5456 0.7422 7 6 4.4411 -1.2138 1.5376 8 6 5.5480 -2.1840 1.2145 9 6 5.6736 -3.3535 1.9484 10 6 6.6776 -4.2490 1.6590 11 6 7.5850 -3.9691 0.6205 12 6 8.6233 -4.8797 0.3172 13 1 9.5224 -4.5310 -0.1690 14 6 8.4859 -6.2327 0.6470 15 7 7.3021 -6.7263 0.9046 16 14 9.9928 -7.3342 0.7193 17 1 10.9398 -6.8113 1.7368 18 1 9.5814 -8.7124 1.0887 19 1 10.6555 -7.3543 -0.6094 20 6 7.4512 -2.7764 -0.1141 21 6 6.4363 -1.8979 0.1893 22 6 2.0756 -0.7884 1.2092 23 1 -0.3634 0.4648 0.9166 24 1 -0.3634 0.5613 -0.8608 25 1 -0.3633 -1.0261 -0.0556 26 1 2.1866 -0.1528 -2.0904 27 1 1.4533 -1.6565 -1.4383 28 1 4.1952 -0.4371 -0.7994 29 1 3.8072 -2.1330 -1.2179 30 1 4.7655 -0.2005 1.3006 31 1 4.1988 -1.2790 2.5983 32 1 4.9782 -3.5645 2.7474 33 1 6.7709 -5.1617 2.2290 34 1 7.2067 -7.6642 1.1329 35 1 8.1422 -2.5514 -0.9129 36 1 6.3319 -0.9816 -0.3729 37 1 1.3144 -1.4759 1.5777 38 1 2.3687 -0.1002 2.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334245329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:28 Heat of formation + Delta-G solvation = 7.817889 kcal Electronic energy + Delta-G solvation = -17269.264752 eV Core-core repulsion = 14689.349804 eV Total energy + Delta-G solvation = -2579.914948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.00901 -37.29904 -34.11819 -32.82463 -30.23491 -29.30092 -29.16511 -26.81815 -25.04053 -23.33944 -21.09224 -20.68231 -20.06086 -19.64246 -17.23800 -15.99036 -15.29316 -15.11193 -14.17984 -14.08621 -13.77887 -13.49569 -13.32035 -12.92573 -12.56179 -12.37895 -12.02256 -11.80215 -11.72879 -11.45228 -11.19135 -10.98226 -10.85585 -10.75647 -10.65391 -10.47950 -10.34971 -10.29449 -9.51017 -9.31175 -9.07016 -7.84369 -7.37849 -7.23207 -6.70755 -4.29760 2.80560 3.08796 3.11452 3.13857 3.23044 3.96388 4.40899 4.64079 4.75552 4.85569 4.98390 5.46039 5.51196 5.53489 5.61293 5.70425 5.77485 5.84262 5.95828 5.97953 6.03813 6.06167 6.18848 6.27779 6.39622 6.43809 6.45057 6.52202 7.01045 7.11817 7.34156 7.38580 7.47701 7.57024 7.67683 7.94211 8.10798 8.21491 8.35980 8.70198 8.94936 9.03954 10.23555 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.049078 B = 0.004496 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.387446 B = 6226.644900 C = 6284.448341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.051 3.949 6 N -0.523 5.523 7 C 0.116 3.884 8 C -0.205 4.205 9 C -0.081 4.081 10 C -0.167 4.167 11 C 0.112 3.888 12 C -0.466 4.466 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.792 5.792 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.228 4.228 21 C -0.084 4.084 22 C 0.044 3.956 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 8.492 -0.577 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 H 0.088 0.912 4 C -0.165 4.165 5 C -0.077 4.077 6 N -0.247 5.247 7 C -0.011 4.011 8 C -0.207 4.207 9 C -0.100 4.100 10 C -0.187 4.187 11 C 0.110 3.890 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.417 5.417 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.247 4.247 21 C -0.102 4.102 22 C -0.084 4.084 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.719 7.731 -0.442 11.662 hybrid contribution 0.798 0.254 -0.118 0.846 sum -7.921 7.985 -0.560 11.262 Atomic orbital electron populations 1.21716 0.94656 1.01956 1.01270 1.22430 0.96006 0.99058 0.96021 0.91183 1.22867 0.97084 0.99600 0.96901 1.22959 0.95420 1.00085 0.89195 1.63702 1.03719 1.54731 1.02518 1.20938 0.88768 0.95082 0.96289 1.18857 0.99779 0.98565 1.03504 1.20487 0.97332 0.93771 0.98370 1.21301 0.97984 0.99751 0.99616 1.17601 0.91488 0.90863 0.89088 1.19552 1.02854 0.92101 1.35006 0.90619 1.25891 0.96663 0.98966 0.92585 1.69831 1.23317 1.15115 1.33475 0.86400 0.82153 0.78536 0.79793 1.18878 1.20365 1.19072 1.20920 1.01781 0.98795 1.03248 1.20336 0.95813 0.97456 0.96638 1.22918 0.94049 0.95300 0.96143 0.92823 0.92882 0.92336 0.91409 0.90803 0.94026 0.90116 0.95926 0.91882 0.89579 0.86558 0.90877 0.89263 0.90073 0.90975 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.15 37.15 0.34 -0.99 16 2 C -0.12 -1.36 3.54 -88.64 -0.31 -1.67 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.61 6.55 -24.43 -0.16 -1.77 16 5 C 0.05 0.82 5.62 -2.30 -0.01 0.81 16 6 N -0.52 -9.04 5.15 -232.69 -1.20 -10.23 16 7 C 0.12 2.13 4.73 -4.97 -0.02 2.11 16 8 C -0.21 -4.57 5.13 -104.33 -0.54 -5.10 16 9 C -0.08 -1.94 9.67 -39.66 -0.38 -2.32 16 10 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 11 C 0.11 3.05 5.58 -106.82 -0.60 2.45 16 12 C -0.47 -12.59 9.05 -37.74 -0.34 -12.93 16 13 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 14 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 15 N -0.79 -20.89 10.95 55.55 0.61 -20.28 16 16 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 21 C -0.08 -1.90 8.91 -39.66 -0.35 -2.25 16 22 C 0.04 0.61 6.46 -2.83 -0.02 0.59 16 23 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 28 H 0.04 0.67 7.02 -51.93 -0.36 0.31 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.02 0.40 7.77 -51.93 -0.40 -0.01 16 31 H 0.06 1.11 7.95 -51.93 -0.41 0.69 16 32 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.12 3.19 6.15 -52.48 -0.32 2.87 16 34 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 36 H 0.08 1.65 7.50 -52.48 -0.39 1.25 16 37 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 38 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -27.64 305.95 -10.26 -37.90 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.04 Total: 4.19 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -3.21 Total: -30.07 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: -0.59 Total: -30.52 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.64 -10.26 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334245329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.718 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds