Wall clock time and date at job start Sun Mar 29 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 110.63295 * 2 1 4 4 C 1.55436 * 110.84095 * 236.81979 * 2 1 3 5 5 C 1.54911 * 101.51852 * 205.90343 * 4 2 1 6 6 N 1.47838 * 104.89565 * 37.06385 * 5 4 2 7 7 C 1.46904 * 111.00124 * 213.58081 * 6 5 4 8 8 C 1.50699 * 109.46981 * 290.12976 * 7 6 5 9 9 C 1.38639 * 119.74498 * 269.72068 * 8 7 6 10 10 C 1.37615 * 120.24565 * 179.76628 * 9 8 7 11 11 C 1.40719 * 119.74716 * 0.48452 * 10 9 8 12 12 C 1.41397 * 120.24329 * 179.79063 * 11 10 9 13 13 H 1.07998 * 119.99437 * 204.38031 * 12 11 10 14 14 C 1.39937 * 120.00270 * 24.37848 * 12 11 10 15 15 N 1.30822 * 120.00169 * 17.86550 * 14 12 11 16 16 Si 1.86797 * 120.00184 * 197.86493 * 14 12 11 17 17 H 1.48509 * 109.47019 * 60.00048 * 16 14 12 18 18 H 1.48501 * 109.47287 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47388 * 300.00246 * 16 14 12 20 20 C 1.40710 * 119.50929 * 359.77245 * 11 10 9 21 21 C 1.37618 * 119.74559 * 359.97438 * 20 11 10 22 22 C 1.47447 * 108.56895 * 335.84625 * 6 5 4 23 23 H 1.09008 * 109.47072 * 296.89095 * 1 2 3 24 24 H 1.09001 * 109.47616 * 56.89613 * 1 2 3 25 25 H 1.08999 * 109.47163 * 176.89797 * 1 2 3 26 26 H 1.08999 * 111.10606 * 87.83189 * 4 2 1 27 27 H 1.09001 * 111.00144 * 323.92075 * 4 2 1 28 28 H 1.09007 * 110.36935 * 278.17468 * 5 4 2 29 29 H 1.09000 * 110.37190 * 155.95389 * 5 4 2 30 30 H 1.09004 * 109.46799 * 50.12508 * 7 6 5 31 31 H 1.08994 * 109.47216 * 170.12748 * 7 6 5 32 32 H 1.08001 * 119.87521 * 0.02562 * 9 8 7 33 33 H 1.08004 * 120.12965 * 180.28135 * 10 9 8 34 34 H 0.97004 * 120.00423 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.12737 * 179.97438 * 20 11 10 36 36 H 1.08008 * 119.87325 * 179.97438 * 21 20 11 37 37 H 1.08996 * 109.88433 * 120.39554 * 22 6 5 38 38 H 1.08995 * 109.89033 * 241.42284 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0829 -0.7950 -1.2158 5 6 3.4690 -1.2424 -0.6883 6 7 3.2515 -1.5456 0.7422 7 6 4.4411 -1.2138 1.5376 8 6 5.5480 -2.1840 1.2145 9 6 5.6736 -3.3535 1.9484 10 6 6.6776 -4.2490 1.6590 11 6 7.5850 -3.9691 0.6205 12 6 8.6233 -4.8797 0.3172 13 1 9.5224 -4.5310 -0.1690 14 6 8.4859 -6.2327 0.6470 15 7 7.3021 -6.7263 0.9046 16 14 9.9928 -7.3342 0.7193 17 1 10.9398 -6.8113 1.7368 18 1 9.5814 -8.7124 1.0887 19 1 10.6555 -7.3543 -0.6094 20 6 7.4512 -2.7764 -0.1141 21 6 6.4363 -1.8979 0.1893 22 6 2.0756 -0.7884 1.2092 23 1 -0.3634 0.4648 0.9166 24 1 -0.3634 0.5613 -0.8608 25 1 -0.3633 -1.0261 -0.0556 26 1 2.1866 -0.1528 -2.0904 27 1 1.4533 -1.6565 -1.4383 28 1 4.1952 -0.4371 -0.7994 29 1 3.8072 -2.1330 -1.2179 30 1 4.7655 -0.2005 1.3006 31 1 4.1988 -1.2790 2.5983 32 1 4.9782 -3.5645 2.7474 33 1 6.7709 -5.1617 2.2290 34 1 7.2067 -7.6642 1.1329 35 1 8.1422 -2.5514 -0.9129 36 1 6.3319 -0.9816 -0.3729 37 1 1.3144 -1.4759 1.5777 38 1 2.3687 -0.1002 2.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334245329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:28 Heat of formation + Delta-G solvation = -6.748281 kcal Electronic energy + Delta-G solvation = -17269.896389 eV Core-core repulsion = 14689.349804 eV Total energy + Delta-G solvation = -2580.546585 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32626 -39.04288 -35.85490 -34.25381 -31.84245 -31.10957 -30.52766 -28.38859 -26.31319 -24.89641 -22.89143 -22.23905 -21.30980 -21.04767 -19.20217 -17.32619 -17.01232 -16.40613 -15.83396 -15.68113 -15.45098 -14.77911 -14.56097 -14.30024 -13.88516 -13.79811 -13.64275 -13.47233 -13.17261 -12.79219 -12.72447 -12.61123 -12.28288 -12.23326 -12.04617 -11.74493 -11.62364 -11.46172 -11.31180 -11.18822 -10.97934 -9.33397 -9.27033 -9.04881 -8.61823 -6.31973 0.97332 1.16476 1.37590 1.49158 1.53706 2.21265 2.69549 3.27039 3.66248 3.78821 3.86314 3.99181 4.29157 4.32952 4.40377 4.53335 4.57387 4.61439 4.63802 4.74479 4.78653 4.88333 4.97627 5.05961 5.08287 5.13393 5.16597 5.21467 5.30567 5.39473 5.48454 5.50044 5.72546 5.95311 6.10988 6.15163 6.29841 6.32947 6.40837 6.72524 6.95805 7.06201 8.34916 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.049078 B = 0.004496 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.387446 B = 6226.644900 C = 6284.448341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.120 4.120 5 C 0.048 3.952 6 N -0.546 5.546 7 C 0.122 3.878 8 C -0.194 4.194 9 C -0.089 4.089 10 C -0.191 4.191 11 C 0.079 3.921 12 C -0.505 4.505 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.244 4.244 21 C -0.082 4.082 22 C 0.042 3.958 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.287 0.713 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 9.876 -0.665 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.080 4.080 6 N -0.270 5.270 7 C -0.005 4.005 8 C -0.196 4.196 9 C -0.107 4.107 10 C -0.211 4.211 11 C 0.077 3.923 12 C -0.535 4.535 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.453 5.453 16 Si 0.803 3.197 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.264 4.264 21 C -0.100 4.100 22 C -0.085 4.085 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.091 0.909 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.793 9.133 -0.533 13.401 hybrid contribution 1.010 -0.072 -0.090 1.016 sum -8.783 9.061 -0.623 12.634 Atomic orbital electron populations 1.21684 0.92896 1.02087 1.02514 1.22404 0.97381 0.98859 0.94048 0.90178 1.22841 0.94828 1.00024 0.98071 1.22927 0.97608 0.98781 0.88689 1.63539 1.04129 1.56364 1.02956 1.20854 0.88122 0.94414 0.97138 1.19307 1.00201 0.98225 1.01857 1.20725 0.96878 0.94088 0.99043 1.21264 0.99499 1.00070 1.00232 1.17946 0.92300 0.92089 0.89957 1.19817 1.03232 0.93405 1.37034 0.90777 1.26765 0.99778 0.99913 0.91502 1.69892 1.25393 1.15871 1.34101 0.85254 0.77829 0.76631 0.79972 1.18493 1.19129 1.18342 1.21138 1.02842 0.98896 1.03487 1.20626 0.94807 0.97928 0.96687 1.22988 0.92626 0.95543 0.97384 0.91718 0.91535 0.92804 0.89466 0.91095 0.93870 0.93179 0.94432 0.90877 0.88129 0.88377 0.90205 0.88750 0.87259 0.90879 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.15 71.98 0.66 -1.46 16 2 C -0.11 -2.16 3.54 -9.51 -0.03 -2.20 16 3 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.12 -2.75 6.55 32.09 0.21 -2.54 16 5 C 0.05 1.47 5.62 86.78 0.49 1.95 16 6 N -0.55 -17.87 5.15 -890.09 -4.58 -22.45 16 7 C 0.12 4.23 4.73 85.56 0.40 4.63 16 8 C -0.19 -8.51 5.13 -19.68 -0.10 -8.61 16 9 C -0.09 -4.31 9.67 22.22 0.21 -4.09 16 10 C -0.19 -10.55 8.70 22.73 0.20 -10.35 16 11 C 0.08 4.48 5.58 -21.29 -0.12 4.36 16 12 C -0.51 -28.38 9.05 23.46 0.21 -28.17 16 13 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 14 C 0.04 1.83 5.14 85.25 0.44 2.27 16 15 N -0.83 -45.01 10.95 21.82 0.24 -44.77 16 16 Si 0.98 39.37 29.59 68.60 2.03 41.40 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 20 C -0.24 -12.48 9.80 22.73 0.22 -12.26 16 21 C -0.08 -3.68 8.91 22.22 0.20 -3.48 16 22 C 0.04 1.05 6.46 86.65 0.56 1.60 16 23 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 28 H 0.04 1.30 7.02 -2.38 -0.02 1.28 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.20 7.77 -2.39 -0.02 1.18 16 31 H 0.07 2.39 7.95 -2.39 -0.02 2.37 16 32 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.10 5.67 6.15 -2.91 -0.02 5.65 16 34 H 0.29 14.16 8.30 -92.70 -0.77 13.39 16 35 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.11 4.24 7.50 -2.91 -0.02 4.22 16 37 H 0.07 1.81 7.82 -2.39 -0.02 1.79 16 38 H 0.06 1.34 7.54 -2.39 -0.02 1.33 16 Total: -1.00 -61.13 305.95 2.25 -58.88 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 1.02 Total: 25.27 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 3.55 Total: -58.33 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -4.34 Total: -67.22 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -61.13 2.25 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334245329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.132 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds