Wall clock time and date at job start Sun Mar 29 2020 23:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46928 * 2 1 4 4 C 1.46904 * 110.99975 * 164.49339 * 3 2 1 5 5 C 1.50689 * 109.47389 * 293.95645 * 4 3 2 6 6 C 1.38639 * 119.75207 * 270.29627 * 5 4 3 7 7 C 1.37616 * 120.25297 * 180.30223 * 6 5 4 8 8 C 1.40714 * 119.74015 * 359.42033 * 7 6 5 9 9 C 1.41400 * 120.24214 * 180.29840 * 8 7 6 10 10 H 1.07997 * 120.00111 * 27.55061 * 9 8 7 11 11 C 1.39947 * 120.00024 * 207.54717 * 9 8 7 12 12 N 1.30827 * 119.99923 * 11.98004 * 11 9 8 13 13 Si 1.86799 * 119.99999 * 191.98505 * 11 9 8 14 14 H 1.48500 * 109.47328 * 89.99933 * 13 11 9 15 15 H 1.48506 * 109.46978 * 209.99614 * 13 11 9 16 16 H 1.48498 * 109.47014 * 329.99665 * 13 11 9 17 17 C 1.40715 * 119.51573 * 0.27953 * 8 7 6 18 18 C 1.37617 * 119.74361 * 0.02562 * 17 8 7 19 19 C 1.46903 * 111.00261 * 288.45120 * 3 2 1 20 20 C 1.53001 * 117.49566 * 240.35112 * 19 3 2 21 21 C 1.52999 * 60.00140 * 252.50684 * 20 19 3 22 22 H 1.08992 * 109.47284 * 65.78422 * 1 2 3 23 23 H 1.08998 * 109.46928 * 185.79205 * 1 2 3 24 24 H 1.09002 * 109.46746 * 305.78735 * 1 2 3 25 25 H 1.08997 * 109.46623 * 240.00677 * 2 1 3 26 26 H 1.08994 * 109.47135 * 120.00181 * 2 1 3 27 27 H 1.09004 * 109.46922 * 173.95214 * 4 3 2 28 28 H 1.09002 * 109.47037 * 53.95627 * 4 3 2 29 29 H 1.08006 * 119.87407 * 0.02562 * 6 5 4 30 30 H 1.07993 * 120.13082 * 179.70211 * 7 6 5 31 31 H 0.97000 * 119.99642 * 180.02562 * 12 11 9 32 32 H 1.08003 * 120.13316 * 180.02562 * 17 8 7 33 33 H 1.07999 * 119.88077 * 180.02562 * 18 17 8 34 34 H 1.08997 * 115.54932 * 26.05433 * 19 3 2 35 35 H 1.09001 * 117.50165 * 359.97438 * 20 19 3 36 36 H 1.09005 * 117.49586 * 145.01888 * 20 19 3 37 37 H 1.09004 * 117.50202 * 252.51564 * 21 20 19 38 38 H 1.09005 * 117.51856 * 107.48079 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4411 1.4408 0.3667 5 6 3.6083 1.0015 1.7984 6 6 3.5394 1.9383 2.8180 7 6 3.6968 1.5494 4.1287 8 6 3.9161 0.1932 4.4328 9 6 4.0730 -0.2191 5.7763 10 1 3.6098 0.3455 6.5719 11 6 4.8283 -1.3587 6.0749 12 7 5.5780 -1.9066 5.1532 13 14 4.7659 -2.0978 7.7893 14 1 3.6776 -3.1060 7.8545 15 1 6.0644 -2.7508 8.0944 16 1 4.5064 -1.0242 8.7819 17 6 3.9779 -0.7499 3.3903 18 6 3.8241 -0.3373 2.0864 19 6 1.7859 2.0261 -1.3009 20 6 3.0091 2.5269 -2.0715 21 6 2.0605 3.5274 -1.4082 22 1 -0.3633 0.4215 -0.9372 23 1 -0.3633 -1.0224 0.1037 24 1 -0.3633 0.6010 0.8337 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8052 2.4622 0.2551 28 1 4.0108 0.7788 -0.2854 29 1 3.3660 2.9780 2.5825 30 1 3.6475 2.2815 4.9210 31 1 6.1012 -2.6967 5.3601 32 1 4.1455 -1.7935 3.6124 33 1 3.8707 -1.0593 1.2846 34 1 0.9554 1.6236 -1.8809 35 1 3.9872 2.3812 -1.6131 36 1 2.9835 2.4539 -3.1588 37 1 1.4107 4.1126 -2.0590 38 1 2.4141 4.0396 -0.5133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342692535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:19 Heat of formation + Delta-G solvation = 43.905587 kcal Electronic energy + Delta-G solvation = -17425.774350 eV Core-core repulsion = 14847.424281 eV Total energy + Delta-G solvation = -2578.350068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.99834 -37.25341 -34.40892 -33.47332 -31.03628 -29.38617 -28.89731 -26.24980 -23.62337 -22.62382 -22.17659 -20.91975 -20.26442 -19.04454 -17.26860 -16.34050 -15.55768 -15.24340 -14.49269 -13.94487 -13.88571 -13.56719 -13.26078 -12.60085 -12.52197 -12.28960 -11.93726 -11.65510 -11.49606 -11.35537 -11.22729 -10.98395 -10.96354 -10.77823 -10.49289 -10.36115 -10.21904 -10.13639 -9.53367 -9.32534 -9.15834 -7.77037 -7.40446 -7.22427 -6.69438 -4.34391 2.74581 3.07742 3.10194 3.12209 3.18141 3.92440 3.95882 4.30177 4.69731 5.01068 5.06462 5.20400 5.40197 5.54277 5.63889 5.72857 5.73160 5.83313 5.93972 5.99560 6.04506 6.17132 6.25273 6.28463 6.38803 6.42603 6.44671 6.51246 6.96013 7.11145 7.28230 7.40222 7.48983 7.52872 7.64798 7.90337 8.08432 8.15397 8.33233 8.67036 8.92940 8.99965 10.24463 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.040278 B = 0.005030 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.003386 B = 5565.539267 C = 5773.640883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.500 5.500 4 C 0.116 3.884 5 C -0.204 4.204 6 C -0.072 4.072 7 C -0.224 4.224 8 C 0.111 3.889 9 C -0.463 4.463 10 H 0.076 0.924 11 C 0.074 3.926 12 N -0.802 5.802 13 Si 0.910 3.090 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.159 4.159 18 C -0.098 4.098 19 C 0.024 3.976 20 C -0.224 4.224 21 C -0.174 4.174 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.026 0.974 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.279 0.721 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 2.931 -9.327 10.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.222 5.222 4 C -0.009 4.009 5 C -0.205 4.205 6 C -0.091 4.091 7 C -0.244 4.244 8 C 0.108 3.892 9 C -0.494 4.494 10 H 0.094 0.906 11 C -0.143 4.143 12 N -0.428 5.428 13 Si 0.735 3.265 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.187 1.187 17 C -0.179 4.179 18 C -0.117 4.117 19 C -0.086 4.086 20 C -0.263 4.263 21 C -0.212 4.212 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.068 2.978 -8.985 10.737 hybrid contribution 0.574 -0.757 0.099 0.955 sum -4.494 2.221 -8.886 10.202 Atomic orbital electron populations 1.21759 0.95536 1.01120 1.01657 1.22177 0.95488 0.88965 1.01541 1.62018 1.18725 1.17043 1.24392 1.20848 0.86362 0.99514 0.94214 1.18884 1.15157 0.93986 0.92492 1.20319 0.99222 0.96657 0.92884 1.21013 1.13038 0.95614 0.94691 1.17637 0.87653 0.90419 0.93452 1.19601 1.28051 1.08469 0.93230 0.90583 1.25887 0.93344 0.95927 0.99101 1.69802 1.19866 1.18406 1.34745 0.86289 0.78292 0.79716 0.82247 1.19371 1.20360 1.18688 1.21342 1.05260 0.99969 0.91298 1.20533 1.01154 0.93954 0.96060 1.22684 0.98283 0.95897 0.91686 1.23557 0.96788 1.06671 0.99303 1.23012 1.02940 0.92666 1.02591 0.93662 0.92754 0.91754 0.95609 0.88874 0.91545 0.95484 0.89562 0.89093 0.91041 0.86295 0.89847 0.87149 0.88163 0.89436 0.89063 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.90 37.16 0.37 -1.58 16 2 C 0.05 0.72 5.49 -3.82 -0.02 0.70 16 3 N -0.50 -8.25 4.66 -228.08 -1.06 -9.31 16 4 C 0.12 2.09 3.74 -4.98 -0.02 2.07 16 5 C -0.20 -4.41 4.96 -104.33 -0.52 -4.93 16 6 C -0.07 -1.63 9.67 -39.66 -0.38 -2.02 16 7 C -0.22 -5.56 9.80 -38.87 -0.38 -5.94 16 8 C 0.11 2.97 5.56 -106.82 -0.59 2.38 16 9 C -0.46 -12.40 9.07 -37.74 -0.34 -12.74 16 10 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 11 C 0.07 1.87 5.24 -17.34 -0.09 1.78 16 12 N -0.80 -20.89 10.83 55.55 0.60 -20.29 16 13 Si 0.91 18.86 29.58 -169.99 -5.03 13.83 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 17 C -0.16 -4.13 8.67 -38.87 -0.34 -4.46 16 18 C -0.10 -2.26 7.81 -39.66 -0.31 -2.57 16 19 C 0.02 0.33 5.79 -67.71 -0.39 -0.06 16 20 C -0.22 -2.79 9.50 -26.73 -0.25 -3.04 16 21 C -0.17 -2.17 10.00 -26.73 -0.27 -2.43 16 22 H 0.04 0.54 6.94 -51.93 -0.36 0.18 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 26 H 0.09 1.70 5.14 -51.93 -0.27 1.43 16 27 H 0.07 1.15 6.18 -51.93 -0.32 0.83 16 28 H 0.03 0.48 7.69 -51.93 -0.40 0.08 16 29 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 32 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 33 H 0.08 1.76 7.73 -52.49 -0.41 1.35 16 34 H 0.11 1.37 6.80 -51.93 -0.35 1.02 16 35 H 0.10 1.34 5.88 -51.93 -0.31 1.04 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.30 7.79 -51.93 -0.40 0.90 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -26.87 304.81 -10.08 -36.95 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.64 Total: 7.07 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -3.54 Total: -32.85 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: -0.46 Total: -29.59 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.87 -10.08 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342692535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.857 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds