Wall clock time and date at job start Sun Mar 29 2020 22:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 119.99401 * 2 1 4 4 C 1.38228 * 119.99844 * 180.02562 * 3 2 1 5 5 C 1.38187 * 120.02641 * 359.97438 * 4 3 2 6 6 C 1.38446 * 119.97023 * 0.02562 * 5 4 3 7 7 C 1.38173 * 119.96533 * 359.95994 * 6 5 4 8 8 C 1.51182 * 108.24942 * 179.97438 * 6 5 4 9 9 N 1.48059 * 105.67372 * 342.50245 * 8 6 5 10 10 C 1.46902 * 110.99594 * 146.96715 * 9 8 6 11 11 C 1.53002 * 109.47524 * 59.80006 * 10 9 8 12 12 C 1.52995 * 109.47122 * 174.75905 * 11 10 9 13 13 C 1.50706 * 109.46711 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99525 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00340 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47159 * 89.99587 * 17 15 13 19 19 H 1.48502 * 109.47062 * 209.99935 * 17 15 13 20 20 H 1.48503 * 109.46973 * 329.99763 * 17 15 13 21 21 C 1.48048 * 103.88756 * 27.60853 * 9 8 6 22 22 H 1.09004 * 109.46988 * 90.00339 * 1 2 3 23 23 H 1.09007 * 109.47189 * 210.00101 * 1 2 3 24 24 H 1.08996 * 109.47238 * 329.99917 * 1 2 3 25 25 H 1.07995 * 120.00246 * 0.03966 * 3 2 1 26 26 H 1.07989 * 119.98790 * 179.97438 * 4 3 2 27 27 H 1.08007 * 119.98277 * 179.97438 * 7 6 5 28 28 H 1.09003 * 110.20983 * 223.45324 * 8 6 5 29 29 H 1.08996 * 110.21096 * 101.55422 * 8 6 5 30 30 H 1.09000 * 109.46952 * 179.79847 * 10 9 8 31 31 H 1.09002 * 109.47227 * 299.79357 * 10 9 8 32 32 H 1.09001 * 109.46305 * 294.75907 * 11 10 9 33 33 H 1.08999 * 109.46816 * 54.75209 * 11 10 9 34 34 H 1.09002 * 109.47320 * 299.99758 * 12 11 10 35 35 H 1.08999 * 109.47844 * 59.99932 * 12 11 10 36 36 H 0.97001 * 120.00019 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.21056 * 91.43757 * 21 9 8 38 38 H 1.08999 * 110.20676 * 213.34129 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1975 -0.0005 5 6 4.2720 0.0012 -0.0005 6 6 3.5798 -1.1978 -0.0005 7 6 2.1981 -1.1970 0.0003 8 6 4.5866 -2.3257 -0.0012 9 7 5.8670 -1.7187 -0.4301 10 6 7.0064 -2.3765 0.2233 11 6 7.0162 -3.8622 -0.1425 12 6 8.2732 -4.5201 0.4299 13 6 8.2824 -5.9835 0.0700 14 1 7.4725 -6.4024 -0.5087 15 6 9.3244 -6.7878 0.4805 16 7 10.3104 -6.2778 1.1856 17 14 9.3363 -8.6016 0.0338 18 1 10.0321 -8.7870 -1.2649 19 1 10.0466 -9.3668 1.0898 20 1 7.9393 -9.0928 -0.0786 21 6 5.7522 -0.3065 -0.0009 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 1.6581 2.1326 0.0006 26 1 4.1201 2.1329 -0.0010 27 1 1.6578 -2.1322 -0.0001 28 1 4.2830 -3.1010 -0.7048 29 1 4.6848 -2.7433 1.0008 30 1 7.9345 -1.9137 -0.1122 31 1 6.9169 -2.2691 1.3043 32 1 6.1318 -4.3445 0.2738 33 1 7.0117 -3.9692 -1.2273 34 1 9.1576 -4.0376 0.0136 35 1 8.2777 -4.4131 1.5146 36 1 11.0433 -6.8437 1.4746 37 1 6.1627 -0.1830 1.0013 38 1 6.2718 0.3443 -0.7042 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361587883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:25 Heat of formation + Delta-G solvation = 16.139080 kcal Electronic energy + Delta-G solvation = -16739.206148 eV Core-core repulsion = 14159.652033 eV Total energy + Delta-G solvation = -2579.554115 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41566 -37.45635 -34.19790 -32.67818 -31.70329 -30.70853 -28.36220 -26.99133 -25.82198 -23.61404 -21.94626 -21.14070 -20.76673 -19.62971 -16.47777 -16.04332 -15.78535 -15.50968 -14.89874 -14.48001 -14.25239 -13.83300 -13.73366 -13.44265 -12.93629 -12.50314 -12.43006 -12.34931 -12.12924 -11.87723 -11.48286 -11.29254 -11.17205 -10.82317 -10.80929 -10.52272 -10.46010 -9.69694 -9.34867 -9.05243 -8.91749 -8.74469 -8.33109 -8.04682 -5.98390 -4.00450 1.23148 1.30843 3.33526 3.39461 3.43039 3.61983 4.17184 4.34117 4.48589 4.58327 4.75123 4.91153 5.13260 5.34317 5.37419 5.38141 5.39978 5.47862 5.52492 5.60438 5.67332 5.72140 5.84900 5.90688 6.03311 6.03936 6.26752 6.30254 6.46577 6.51957 6.63695 6.76143 6.91113 6.97034 7.17518 7.30028 7.69300 7.83893 8.01794 8.44966 9.06627 9.63516 11.13104 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.045559 B = 0.003696 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.434792 B = 7572.932832 C = 8075.760097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.124 4.124 4 C -0.099 4.099 5 C -0.106 4.106 6 C -0.092 4.092 7 C -0.103 4.103 8 C 0.075 3.925 9 N -0.503 5.503 10 C 0.045 3.955 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.073 3.927 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.602 14.788 -1.296 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.093 4.093 7 C -0.121 4.121 8 C -0.053 4.053 9 N -0.227 5.227 10 C -0.083 4.083 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.055 4.055 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.314 14.670 -1.784 22.013 hybrid contribution 0.087 -0.929 0.712 1.174 sum -16.228 13.741 -1.072 21.291 Atomic orbital electron populations 1.20760 0.91102 1.02671 1.02271 1.19799 0.95948 0.92899 1.00270 1.20892 0.93718 0.97454 1.02090 1.20447 0.93830 0.96791 1.00643 1.20662 0.95961 0.93662 1.00347 1.20729 0.93829 0.95910 0.98812 1.20361 0.92408 0.97791 1.01558 1.21663 0.87850 0.95215 1.00532 1.65379 1.02385 1.00995 1.53898 1.22590 0.92662 0.97269 0.95739 1.21674 1.00837 0.90893 1.01102 1.19070 0.91519 0.94988 0.95966 1.21249 1.06484 0.94181 1.33787 0.92663 1.25029 0.95629 0.98658 0.95201 1.69964 1.10395 1.35796 1.37457 0.86594 0.78109 0.85215 0.78092 1.20641 1.21264 1.19875 1.21667 0.91816 0.92007 0.99991 0.91226 0.91548 0.91644 0.85998 0.86125 0.86046 0.89011 0.91758 0.90453 0.94866 0.93479 0.92344 0.96486 0.96790 0.93032 0.92224 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 4 C -0.10 -1.11 10.04 -39.60 -0.40 -1.51 16 5 C -0.11 -1.41 6.26 -104.33 -0.65 -2.06 16 6 C -0.09 -1.27 6.26 -104.33 -0.65 -1.93 16 7 C -0.10 -1.23 9.70 -39.61 -0.38 -1.62 16 8 C 0.07 1.12 5.38 -4.10 -0.02 1.10 16 9 N -0.50 -8.10 5.55 -234.91 -1.30 -9.41 16 10 C 0.04 0.79 4.74 -3.82 -0.02 0.78 16 11 C -0.11 -2.25 4.94 -26.73 -0.13 -2.39 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.07 1.00 6.61 -4.11 -0.03 0.97 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 24 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 25 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.98 7.60 -51.93 -0.39 0.59 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.03 0.58 7.91 -51.93 -0.41 0.17 16 32 H 0.05 0.97 7.26 -51.93 -0.38 0.59 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -30.97 312.63 -10.54 -41.51 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.19 Total: -3.60 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -3.48 Total: -23.59 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.57 Total: -35.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.97 -10.54 -41.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361587883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.650 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds