Wall clock time and date at job start Sun Mar 29 2020 22:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 119.99401 * 2 1 4 4 C 1.38228 * 119.99844 * 180.02562 * 3 2 1 5 5 C 1.38187 * 120.02641 * 359.97438 * 4 3 2 6 6 C 1.38446 * 119.97023 * 0.02562 * 5 4 3 7 7 C 1.38173 * 119.96533 * 359.95994 * 6 5 4 8 8 C 1.51182 * 108.24942 * 179.97438 * 6 5 4 9 9 N 1.48059 * 105.67372 * 342.50245 * 8 6 5 10 10 C 1.46902 * 110.99594 * 146.96715 * 9 8 6 11 11 C 1.53002 * 109.47524 * 59.80006 * 10 9 8 12 12 C 1.52995 * 109.47122 * 174.75905 * 11 10 9 13 13 C 1.50706 * 109.46711 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99525 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00340 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47159 * 89.99587 * 17 15 13 19 19 H 1.48502 * 109.47062 * 209.99935 * 17 15 13 20 20 H 1.48503 * 109.46973 * 329.99763 * 17 15 13 21 21 C 1.48048 * 103.88756 * 27.60853 * 9 8 6 22 22 H 1.09004 * 109.46988 * 90.00339 * 1 2 3 23 23 H 1.09007 * 109.47189 * 210.00101 * 1 2 3 24 24 H 1.08996 * 109.47238 * 329.99917 * 1 2 3 25 25 H 1.07995 * 120.00246 * 0.03966 * 3 2 1 26 26 H 1.07989 * 119.98790 * 179.97438 * 4 3 2 27 27 H 1.08007 * 119.98277 * 179.97438 * 7 6 5 28 28 H 1.09003 * 110.20983 * 223.45324 * 8 6 5 29 29 H 1.08996 * 110.21096 * 101.55422 * 8 6 5 30 30 H 1.09000 * 109.46952 * 179.79847 * 10 9 8 31 31 H 1.09002 * 109.47227 * 299.79357 * 10 9 8 32 32 H 1.09001 * 109.46305 * 294.75907 * 11 10 9 33 33 H 1.08999 * 109.46816 * 54.75209 * 11 10 9 34 34 H 1.09002 * 109.47320 * 299.99758 * 12 11 10 35 35 H 1.08999 * 109.47844 * 59.99932 * 12 11 10 36 36 H 0.97001 * 120.00019 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.21056 * 91.43757 * 21 9 8 38 38 H 1.08999 * 110.20676 * 213.34129 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1975 -0.0005 5 6 4.2720 0.0012 -0.0005 6 6 3.5798 -1.1978 -0.0005 7 6 2.1981 -1.1970 0.0003 8 6 4.5866 -2.3257 -0.0012 9 7 5.8670 -1.7187 -0.4301 10 6 7.0064 -2.3765 0.2233 11 6 7.0162 -3.8622 -0.1425 12 6 8.2732 -4.5201 0.4299 13 6 8.2824 -5.9835 0.0700 14 1 7.4725 -6.4024 -0.5087 15 6 9.3244 -6.7878 0.4805 16 7 10.3104 -6.2778 1.1856 17 14 9.3363 -8.6016 0.0338 18 1 10.0321 -8.7870 -1.2649 19 1 10.0466 -9.3668 1.0898 20 1 7.9393 -9.0928 -0.0786 21 6 5.7522 -0.3065 -0.0009 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 1.6581 2.1326 0.0006 26 1 4.1201 2.1329 -0.0010 27 1 1.6578 -2.1322 -0.0001 28 1 4.2830 -3.1010 -0.7048 29 1 4.6848 -2.7433 1.0008 30 1 7.9345 -1.9137 -0.1122 31 1 6.9169 -2.2691 1.3043 32 1 6.1318 -4.3445 0.2738 33 1 7.0117 -3.9692 -1.2273 34 1 9.1576 -4.0376 0.0136 35 1 8.2777 -4.4131 1.5146 36 1 11.0433 -6.8437 1.4746 37 1 6.1627 -0.1830 1.0013 38 1 6.2718 0.3443 -0.7042 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361587883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:25 Heat of formation + Delta-G solvation = -1.532939 kcal Electronic energy + Delta-G solvation = -16739.972464 eV Core-core repulsion = 14159.652033 eV Total energy + Delta-G solvation = -2580.320431 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41696 -38.55911 -35.98022 -34.23613 -32.84472 -32.03121 -29.57592 -28.26519 -27.18570 -25.07836 -23.21962 -22.44922 -21.93234 -20.99245 -18.51136 -17.22462 -16.96430 -16.64523 -16.37185 -15.85710 -15.64435 -14.85508 -14.80479 -14.46656 -14.27942 -13.97281 -13.79968 -13.48117 -13.23806 -13.06317 -12.95755 -12.80505 -12.47987 -12.37437 -12.20498 -12.09055 -11.70039 -11.53784 -11.40350 -11.13053 -10.56213 -9.93684 -9.69636 -9.12393 -8.21068 -6.32147 0.34183 0.42855 1.39626 1.41258 1.52363 2.40365 2.74171 2.93410 3.12110 3.38467 3.55224 4.03395 4.09777 4.12127 4.18878 4.37522 4.41132 4.45432 4.55621 4.63272 4.65482 4.70213 4.82278 4.86724 4.87846 4.96628 5.05547 5.16417 5.19113 5.28605 5.43985 5.49247 5.52063 5.65714 5.70234 5.83346 5.84878 5.95033 6.07422 6.25067 6.84249 7.37061 8.90963 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.045559 B = 0.003696 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.434792 B = 7572.932832 C = 8075.760097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.101 4.101 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.115 4.115 8 C 0.075 3.925 9 N -0.514 5.514 10 C 0.058 3.942 11 C -0.091 4.091 12 C 0.027 3.973 13 C -0.544 4.544 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.073 3.927 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.143 0.857 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.053 0.947 34 H -0.006 1.006 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.518 15.461 -1.776 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.133 4.133 8 C -0.052 4.052 9 N -0.237 5.237 10 C -0.070 4.070 11 C -0.129 4.129 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.054 4.054 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.170 0.830 26 H 0.160 0.840 27 H 0.149 0.851 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.247 15.356 -2.270 23.957 hybrid contribution 0.631 -1.066 0.868 1.512 sum -17.616 14.290 -1.402 22.727 Atomic orbital electron populations 1.20822 0.88814 1.03798 1.03210 1.20210 0.97664 0.92409 0.98781 1.21306 0.93478 0.98657 1.00576 1.20763 0.94549 0.96866 0.99779 1.20734 0.95419 0.94463 1.01936 1.20718 0.94537 0.95437 1.00859 1.20607 0.91846 0.99144 1.01691 1.21600 0.88012 0.95829 0.99798 1.65303 1.02137 1.02397 1.53857 1.22310 0.93706 0.95192 0.95812 1.21405 0.98291 0.92922 1.00278 1.18960 0.92981 0.94602 0.94555 1.21684 1.06866 0.95577 1.34071 0.92309 1.25991 0.95074 1.03907 0.94884 1.70092 1.11102 1.37795 1.38383 0.85435 0.78649 0.78851 0.78049 1.19719 1.20613 1.18755 1.21678 0.92882 0.90470 1.00342 0.90242 0.91041 0.89988 0.83005 0.83951 0.85079 0.89578 0.92657 0.90539 0.94866 0.93189 0.92815 0.98766 0.98996 0.92717 0.92004 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.09 -1.69 5.88 -19.86 -0.12 -1.81 16 3 C -0.12 -2.15 9.70 22.27 0.22 -1.94 16 4 C -0.10 -2.06 10.04 22.26 0.22 -1.84 16 5 C -0.12 -3.22 6.26 -19.67 -0.12 -3.34 16 6 C -0.11 -3.13 6.26 -19.68 -0.12 -3.25 16 7 C -0.11 -2.62 9.70 22.25 0.22 -2.40 16 8 C 0.08 2.29 5.38 85.49 0.46 2.75 16 9 N -0.51 -16.67 5.55 -897.12 -4.98 -21.65 16 10 C 0.06 2.09 4.74 86.30 0.41 2.50 16 11 C -0.09 -3.93 4.94 30.59 0.15 -3.78 16 12 C 0.03 1.44 4.97 29.85 0.15 1.59 16 13 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 16 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 21 C 0.07 1.99 6.61 85.49 0.57 2.56 16 22 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 24 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 25 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 26 H 0.14 2.18 8.06 -2.92 -0.02 2.16 16 27 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.62 16 29 H 0.06 1.74 7.60 -2.39 -0.02 1.72 16 30 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.03 1.19 7.91 -2.39 -0.02 1.18 16 32 H 0.05 2.10 7.26 -2.39 -0.02 2.08 16 33 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.06 1.63 7.69 -2.39 -0.02 1.61 16 38 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -66.73 312.63 1.78 -64.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.01 Total: 7.77 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 3.43 Total: -40.69 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -4.70 Total: -79.01 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.73 1.78 -64.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361587883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.418 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds