Wall clock time and date at job start Sun Mar 29 2020 22:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 C 1.50697 * 109.47049 * 119.99918 * 2 1 3 5 5 C 1.38017 * 119.99629 * 273.91803 * 4 2 1 6 6 C 1.38307 * 119.93247 * 180.02562 * 5 4 2 7 7 C 1.38218 * 120.19129 * 0.04115 * 6 5 4 8 8 C 1.38397 * 120.31496 * 0.02562 * 7 6 5 9 9 C 1.38938 * 119.53389 * 0.16393 * 8 7 6 10 10 N 1.39530 * 120.77951 * 180.49996 * 9 8 7 11 11 C 1.36844 * 120.52376 * 166.31051 * 10 9 8 12 12 H 1.07997 * 119.99632 * 306.25585 * 11 10 9 13 13 C 1.38790 * 120.00245 * 125.98380 * 11 10 9 14 14 N 1.31597 * 119.99916 * 354.72706 * 13 11 10 15 15 Si 1.86805 * 120.00137 * 174.72471 * 13 11 10 16 16 H 1.48490 * 109.46901 * 90.00094 * 15 13 11 17 17 H 1.48501 * 109.46966 * 210.00260 * 15 13 11 18 18 H 1.48499 * 109.46887 * 329.99875 * 15 13 11 19 19 C 1.46914 * 118.94942 * 346.03358 * 10 9 8 20 20 C 1.53435 * 107.81377 * 44.98966 * 19 10 9 21 21 C 1.50593 * 118.95388 * 179.85552 * 8 7 6 22 22 H 1.09006 * 109.46993 * 299.99846 * 1 2 3 23 23 H 1.08996 * 109.47179 * 60.00182 * 1 2 3 24 24 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47209 * 239.99885 * 2 1 3 26 26 H 1.09000 * 109.47042 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46973 * 299.99944 * 3 2 1 28 28 H 1.08998 * 109.47201 * 59.99880 * 3 2 1 29 29 H 1.07998 * 120.03203 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.90699 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.84510 * 180.02562 * 7 6 5 32 32 H 0.97001 * 120.00212 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.79328 * 164.56720 * 19 10 9 34 34 H 1.08999 * 109.79779 * 285.35094 * 19 10 9 35 35 H 1.09005 * 109.57258 * 56.57045 * 20 19 10 36 36 H 1.08994 * 109.57677 * 176.83144 * 20 19 10 37 37 H 1.08999 * 109.30774 * 39.28202 * 21 8 7 38 38 H 1.09007 * 109.30950 * 279.88818 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1853 -0.0165 2.4137 6 6 2.6469 -0.6697 3.5420 7 6 2.9565 -2.0157 3.4882 8 6 2.8078 -2.7200 2.3062 9 6 2.3479 -2.0637 1.1711 10 7 2.1785 -2.7507 -0.0314 11 6 1.4729 -2.1878 -1.0600 12 1 0.4699 -1.8247 -0.8915 13 6 2.0483 -2.0786 -2.3183 14 7 3.3064 -2.4200 -2.4983 15 14 1.0369 -1.4469 -3.7562 16 1 1.1666 0.0298 -3.8416 17 1 1.5296 -2.0608 -5.0154 18 1 -0.3894 -1.8079 -3.5545 19 6 2.7749 -4.0853 -0.1781 20 6 2.4747 -4.8768 1.1016 21 6 3.1573 -4.1846 2.2813 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.9448 1.0354 2.4584 30 1 2.7661 -0.1264 4.4678 31 1 3.3162 -2.5202 4.3728 32 1 3.7085 -2.3440 -3.3778 33 1 2.3367 -4.5930 -1.0374 34 1 3.8527 -3.9953 -0.3131 35 1 1.3979 -4.9063 1.2686 36 1 2.8566 -5.8927 1.0008 37 1 2.8289 -4.6493 3.2110 38 1 4.2377 -4.2958 2.1884 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452070272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:18 Heat of formation + Delta-G solvation = 37.470335 kcal Electronic energy + Delta-G solvation = -18821.135771 eV Core-core repulsion = 16242.506649 eV Total energy + Delta-G solvation = -2578.629122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48322 -35.81143 -35.41848 -32.47556 -31.24739 -29.33278 -28.12763 -26.50871 -25.38877 -23.37424 -22.22000 -21.57073 -19.38533 -18.10731 -17.34027 -15.79308 -15.00440 -14.82480 -14.39125 -13.86888 -13.33475 -13.13626 -12.91817 -12.58227 -12.52809 -12.35665 -11.78316 -11.73280 -11.50940 -11.25693 -11.21326 -10.93875 -10.78254 -10.48681 -10.23514 -10.09989 -9.95492 -9.75696 -9.61563 -9.37744 -8.51417 -8.39978 -7.52095 -6.47116 -5.91223 -3.89350 2.47794 2.75801 3.14776 3.21318 3.22438 4.09585 4.82253 4.99222 5.06000 5.60895 5.69628 5.84128 5.85869 5.88766 6.08195 6.19294 6.20941 6.24748 6.38706 6.40167 6.41318 6.57824 6.60806 6.63013 6.69867 6.74217 6.88096 6.94650 7.05820 7.17531 7.18248 7.23137 7.49155 7.53696 7.62866 7.68353 7.98295 8.05612 8.34706 8.82457 9.27047 9.83105 10.71875 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.012101 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.160009 B = 2313.366154 C = 3317.334914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.086 4.086 6 C -0.223 4.223 7 C -0.079 4.079 8 C -0.200 4.200 9 C 0.237 3.763 10 N -0.461 5.461 11 C -0.310 4.310 12 H 0.101 0.899 13 C 0.035 3.965 14 N -0.867 5.867 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.144 3.856 20 C -0.141 4.141 21 C -0.056 4.056 22 H 0.033 0.967 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.157 0.843 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 0.246 4.597 4.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.196 4.196 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.245 4.245 7 C -0.098 4.098 8 C -0.207 4.207 9 C 0.125 3.875 10 N -0.153 5.153 11 C -0.439 4.439 12 H 0.118 0.882 13 C -0.171 4.171 14 N -0.502 5.502 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.192 1.192 19 C 0.021 3.979 20 C -0.179 4.179 21 C -0.094 4.094 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.174 0.826 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.730 0.077 4.150 4.497 hybrid contribution -0.261 0.426 -0.639 0.811 sum -1.991 0.503 3.510 4.067 Atomic orbital electron populations 1.21959 0.96699 1.01164 0.99077 1.21156 0.94322 0.93789 1.01571 1.21894 1.00455 0.97748 0.99527 1.19231 1.07371 0.92149 0.95232 1.20623 0.99140 0.98347 0.92378 1.20371 1.11169 0.95020 0.97920 1.20486 0.99291 0.94108 0.95868 1.19082 1.13044 0.95226 0.93300 1.17924 0.92133 0.90167 0.87260 1.42295 1.50466 1.12713 1.09787 1.19662 0.97856 1.38516 0.87827 0.88232 1.25725 0.95197 0.96774 0.99416 1.69964 1.11122 1.45540 1.23569 0.86320 0.80334 0.79617 0.81110 1.19742 1.20830 1.19154 1.21338 0.97800 0.84049 0.94759 1.21962 1.00575 0.98296 0.97076 1.20089 0.99273 0.92385 0.97610 0.94750 0.94206 0.91864 0.82626 0.93545 0.94064 0.94267 0.87903 0.88589 0.88385 0.92273 0.91423 0.93213 0.92207 0.92263 0.92616 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.26 37.16 0.31 -2.28 16 2 C -0.09 -1.97 2.27 -91.77 -0.21 -2.18 16 3 C -0.14 -2.65 8.60 37.16 0.32 -2.33 16 4 C -0.14 -3.03 4.89 -104.39 -0.51 -3.54 16 5 C -0.09 -1.75 9.14 -39.64 -0.36 -2.11 16 6 C -0.22 -4.32 10.04 -39.56 -0.40 -4.72 16 7 C -0.08 -1.54 9.66 -39.53 -0.38 -1.92 16 8 C -0.20 -4.26 5.76 -104.36 -0.60 -4.87 16 9 C 0.24 5.58 6.33 -83.78 -0.53 5.05 16 10 N -0.46 -11.19 2.78 -119.04 -0.33 -11.52 16 11 C -0.31 -7.66 5.49 -15.11 -0.08 -7.74 16 12 H 0.10 2.42 3.76 -52.49 -0.20 2.22 16 13 C 0.03 0.86 4.34 -17.45 -0.08 0.79 16 14 N -0.87 -22.88 12.64 55.49 0.70 -22.18 16 15 Si 0.90 19.47 29.46 -169.99 -5.01 14.46 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 C 0.14 3.23 5.26 -3.59 -0.02 3.21 16 20 C -0.14 -2.61 6.12 -26.57 -0.16 -2.78 16 21 C -0.06 -1.04 5.78 -28.00 -0.16 -1.20 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.31 5.87 -51.93 -0.30 1.00 16 25 H 0.16 3.83 3.46 -63.95 -0.22 3.61 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.67 6.51 -51.93 -0.34 0.33 16 29 H 0.10 1.90 6.28 -52.49 -0.33 1.57 16 30 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 289.64 15.07 4.36 4.36 Total: -1.00 -26.18 289.64 -8.73 -34.91 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.59 Total: 6.59 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.87 Total: -26.63 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.37 Total: -33.70 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.01 Total: 14.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.18 -8.73 -34.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452070272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.378 kcal (2) G-P(sol) polarization free energy of solvation -26.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds