Wall clock time and date at job start Sun Mar 29 2020 22:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 C 1.50697 * 109.47049 * 119.99918 * 2 1 3 5 5 C 1.38017 * 119.99629 * 273.91803 * 4 2 1 6 6 C 1.38307 * 119.93247 * 180.02562 * 5 4 2 7 7 C 1.38218 * 120.19129 * 0.04115 * 6 5 4 8 8 C 1.38397 * 120.31496 * 0.02562 * 7 6 5 9 9 C 1.38938 * 119.53389 * 0.16393 * 8 7 6 10 10 N 1.39530 * 120.77951 * 180.49996 * 9 8 7 11 11 C 1.36844 * 120.52376 * 166.31051 * 10 9 8 12 12 H 1.07997 * 119.99632 * 306.25585 * 11 10 9 13 13 C 1.38790 * 120.00245 * 125.98380 * 11 10 9 14 14 N 1.31597 * 119.99916 * 354.72706 * 13 11 10 15 15 Si 1.86805 * 120.00137 * 174.72471 * 13 11 10 16 16 H 1.48490 * 109.46901 * 90.00094 * 15 13 11 17 17 H 1.48501 * 109.46966 * 210.00260 * 15 13 11 18 18 H 1.48499 * 109.46887 * 329.99875 * 15 13 11 19 19 C 1.46914 * 118.94942 * 346.03358 * 10 9 8 20 20 C 1.53435 * 107.81377 * 44.98966 * 19 10 9 21 21 C 1.50593 * 118.95388 * 179.85552 * 8 7 6 22 22 H 1.09006 * 109.46993 * 299.99846 * 1 2 3 23 23 H 1.08996 * 109.47179 * 60.00182 * 1 2 3 24 24 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47209 * 239.99885 * 2 1 3 26 26 H 1.09000 * 109.47042 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46973 * 299.99944 * 3 2 1 28 28 H 1.08998 * 109.47201 * 59.99880 * 3 2 1 29 29 H 1.07998 * 120.03203 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.90699 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.84510 * 180.02562 * 7 6 5 32 32 H 0.97001 * 120.00212 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.79328 * 164.56720 * 19 10 9 34 34 H 1.08999 * 109.79779 * 285.35094 * 19 10 9 35 35 H 1.09005 * 109.57258 * 56.57045 * 20 19 10 36 36 H 1.08994 * 109.57677 * 176.83144 * 20 19 10 37 37 H 1.08999 * 109.30774 * 39.28202 * 21 8 7 38 38 H 1.09007 * 109.30950 * 279.88818 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1853 -0.0165 2.4137 6 6 2.6469 -0.6697 3.5420 7 6 2.9565 -2.0157 3.4882 8 6 2.8078 -2.7200 2.3062 9 6 2.3479 -2.0637 1.1711 10 7 2.1785 -2.7507 -0.0314 11 6 1.4729 -2.1878 -1.0600 12 1 0.4699 -1.8247 -0.8915 13 6 2.0483 -2.0786 -2.3183 14 7 3.3064 -2.4200 -2.4983 15 14 1.0369 -1.4469 -3.7562 16 1 1.1666 0.0298 -3.8416 17 1 1.5296 -2.0608 -5.0154 18 1 -0.3894 -1.8079 -3.5545 19 6 2.7749 -4.0853 -0.1781 20 6 2.4747 -4.8768 1.1016 21 6 3.1573 -4.1846 2.2813 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.9448 1.0354 2.4584 30 1 2.7661 -0.1264 4.4678 31 1 3.3162 -2.5202 4.3728 32 1 3.7085 -2.3440 -3.3778 33 1 2.3367 -4.5930 -1.0374 34 1 3.8527 -3.9953 -0.3131 35 1 1.3979 -4.9063 1.2686 36 1 2.8566 -5.8927 1.0008 37 1 2.8289 -4.6493 3.2110 38 1 4.2377 -4.2958 2.1884 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452070272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:17 Heat of formation + Delta-G solvation = 26.001793 kcal Electronic energy + Delta-G solvation = -18821.633084 eV Core-core repulsion = 16242.506649 eV Total energy + Delta-G solvation = -2579.126435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11628 -37.44533 -37.04782 -34.17116 -32.94353 -30.94431 -29.77618 -28.07977 -27.09937 -25.03121 -23.83428 -23.20884 -21.00605 -19.70914 -19.11382 -17.49480 -16.70758 -16.43501 -16.04200 -15.47723 -14.93934 -14.76834 -14.50441 -14.25576 -14.16504 -13.96289 -13.37390 -13.27714 -13.10536 -12.95108 -12.85074 -12.51054 -12.38429 -12.17897 -11.82980 -11.67159 -11.60413 -11.39660 -11.23974 -10.97256 -10.28228 -10.14619 -9.09593 -8.32548 -7.66818 -5.76381 0.87983 1.13463 1.41416 1.43823 1.50632 2.32175 3.04409 3.31152 3.37617 4.09628 4.15596 4.29112 4.31412 4.37499 4.58052 4.60454 4.68488 4.74689 4.82255 4.90503 4.92644 5.04577 5.07428 5.08429 5.12583 5.14560 5.21536 5.39084 5.47056 5.49876 5.55616 5.64110 5.70300 5.89281 6.03392 6.07500 6.29405 6.36437 6.60028 7.02009 7.50805 8.03304 8.86967 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.012101 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.160009 B = 2313.366154 C = 3317.334914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 C -0.132 4.132 4 C -0.157 4.157 5 C -0.093 4.093 6 C -0.216 4.216 7 C -0.084 4.084 8 C -0.212 4.212 9 C 0.199 3.801 10 N -0.485 5.485 11 C -0.303 4.303 12 H 0.100 0.900 13 C -0.007 4.007 14 N -0.908 5.908 15 Si 0.950 3.050 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.258 1.258 19 C 0.150 3.850 20 C -0.129 4.129 21 C -0.055 4.055 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.125 0.875 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.262 0.738 33 H 0.048 0.952 34 H 0.022 0.978 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 0.875 6.718 7.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.114 4.114 3 C -0.190 4.190 4 C -0.162 4.162 5 C -0.112 4.112 6 C -0.237 4.237 7 C -0.102 4.102 8 C -0.218 4.218 9 C 0.090 3.910 10 N -0.180 5.180 11 C -0.432 4.432 12 H 0.117 0.883 13 C -0.208 4.208 14 N -0.545 5.545 15 Si 0.775 3.225 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.182 1.182 19 C 0.026 3.974 20 C -0.167 4.167 21 C -0.092 4.092 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.142 0.858 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.426 0.718 6.307 6.796 hybrid contribution -0.029 0.282 -1.122 1.157 sum -2.455 1.000 5.186 5.824 Atomic orbital electron populations 1.21839 0.95407 1.00390 1.00368 1.21020 0.95473 0.94812 1.00091 1.21815 0.99563 0.96516 1.01068 1.19519 1.08056 0.92239 0.96377 1.20897 0.98914 0.99306 0.92052 1.20825 1.08939 0.95232 0.98699 1.20884 0.98617 0.94430 0.96302 1.19562 1.12167 0.96852 0.93235 1.18377 0.93792 0.91186 0.87634 1.42425 1.51712 1.13593 1.10224 1.19830 0.97826 1.37305 0.88199 0.88272 1.26312 0.95782 0.97240 1.01448 1.70085 1.12723 1.48129 1.23589 0.85543 0.79486 0.79085 0.78421 1.19444 1.21275 1.18225 1.21175 0.95785 0.84208 0.96199 1.21875 1.00461 0.99221 0.95155 1.20147 0.99516 0.90954 0.98626 0.93150 0.93076 0.93604 0.85815 0.94858 0.93076 0.92100 0.85970 0.85407 0.85137 0.92837 0.93305 0.95969 0.92671 0.89293 0.89615 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.26 71.98 0.59 -4.10 16 2 C -0.10 -4.13 2.27 -11.54 -0.03 -4.16 16 3 C -0.13 -4.88 8.60 71.98 0.62 -4.26 16 4 C -0.16 -6.94 4.89 -19.71 -0.10 -7.04 16 5 C -0.09 -3.56 9.14 22.23 0.20 -3.36 16 6 C -0.22 -7.58 10.04 22.28 0.22 -7.36 16 7 C -0.08 -2.99 9.66 22.30 0.22 -2.78 16 8 C -0.21 -8.69 5.76 -19.69 -0.11 -8.81 16 9 C 0.20 9.38 6.33 38.29 0.24 9.62 16 10 N -0.48 -24.15 2.78 -530.52 -1.48 -25.62 16 11 C -0.30 -15.38 5.49 84.04 0.46 -14.92 16 12 H 0.10 4.93 3.76 -2.91 -0.01 4.92 16 13 C -0.01 -0.34 4.34 84.86 0.37 0.02 16 14 N -0.91 -50.14 12.64 21.65 0.27 -49.87 16 15 Si 0.95 40.82 29.46 68.60 2.02 42.84 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 C 0.15 6.94 5.26 86.45 0.45 7.39 16 20 C -0.13 -4.67 6.12 30.70 0.19 -4.48 16 21 C -0.06 -1.92 5.78 29.77 0.17 -1.75 16 22 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.89 5.87 -2.39 -0.01 1.87 16 25 H 0.12 6.21 3.46 -13.68 -0.05 6.16 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.94 6.51 -2.39 -0.02 1.92 16 29 H 0.12 4.11 6.28 -2.91 -0.02 4.09 16 30 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 38 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -57.57 289.64 5.33 -52.24 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 1.00 Total: 26.38 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.51 Total: -45.97 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -1.20 Total: -75.49 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.02 Total: 42.84 kcal Total: -57.57 5.33 -52.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452070272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.240 kcal (2) G-P(sol) polarization free energy of solvation -57.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds